HEADER CIRCADIAN CLOCK PROTEIN 31-OCT-14 4WUJ TITLE STRUCTURAL BIOCHEMISTRY OF A FUNGAL LOV DOMAIN PHOTORECEPTOR REVEALS TITLE 2 AN EVOLUTIONARILY CONSERVED PATHWAY INTEGRATING BLUE-LIGHT AND TITLE 3 OXIDATIVE STRESS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 15, CELLULOSE SIGNALING COMPND 3 ASSOCIATED PROTEIN ENVOY; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_TAXID: 431241; SOURCE 4 STRAIN: QM6A; SOURCE 5 GENE: ENV1, TRIREDRAFT_81609; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGST KEYWDS LOV DOMAIN, BLUE-LIGHT, PHOTORECEPTOR, CIRCADIAN CLOCK, CIRCADIAN KEYWDS 2 CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.C.HOPKINS,J.LOKHANDWALA,B.D.ZOLTOWSKI REVDAT 4 27-SEP-23 4WUJ 1 REMARK REVDAT 3 22-NOV-17 4WUJ 1 SOURCE JRNL REMARK REVDAT 2 28-JAN-15 4WUJ 1 JRNL REVDAT 1 14-JAN-15 4WUJ 0 JRNL AUTH J.LOKHANDWALA,H.C.HOPKINS,A.RODRIGUEZ-IGLESIAS,C.DATTENBOCK, JRNL AUTH 2 M.SCHMOLL,B.D.ZOLTOWSKI JRNL TITL STRUCTURAL BIOCHEMISTRY OF A FUNGAL LOV DOMAIN PHOTORECEPTOR JRNL TITL 2 REVEALS AN EVOLUTIONARILY CONSERVED PATHWAY INTEGRATING JRNL TITL 3 LIGHT AND OXIDATIVE STRESS. JRNL REF STRUCTURE V. 23 116 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25533487 JRNL DOI 10.1016/J.STR.2014.10.020 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 30102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3430 - 4.9555 0.89 2442 139 0.2135 0.2276 REMARK 3 2 4.9555 - 3.9341 0.95 2561 137 0.1722 0.2198 REMARK 3 3 3.9341 - 3.4370 0.98 2641 137 0.2077 0.2611 REMARK 3 4 3.4370 - 3.1228 0.99 2659 126 0.2071 0.2709 REMARK 3 5 3.1228 - 2.8990 0.99 2645 165 0.2142 0.2901 REMARK 3 6 2.8990 - 2.7281 0.98 2655 116 0.2123 0.3129 REMARK 3 7 2.7281 - 2.5915 0.99 2622 145 0.2159 0.2598 REMARK 3 8 2.5915 - 2.4787 0.98 2634 132 0.2121 0.2649 REMARK 3 9 2.4787 - 2.3833 0.98 2638 133 0.2234 0.2654 REMARK 3 10 2.3833 - 2.3011 0.97 2582 145 0.2256 0.3002 REMARK 3 11 2.3011 - 2.2291 0.94 2509 139 0.2290 0.3299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 45.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.89110 REMARK 3 B22 (A**2) : -8.84250 REMARK 3 B33 (A**2) : 13.73350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.00380 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4564 REMARK 3 ANGLE : 1.485 6244 REMARK 3 CHIRALITY : 0.076 695 REMARK 3 PLANARITY : 0.008 794 REMARK 3 DIHEDRAL : 18.267 1654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.11800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, PHASER REMARK 200 STARTING MODEL: 3D72 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5 BUFFER, 6% (V/V) REMARK 280 PEG400 AND 1.4M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.11250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.34788 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -51.11250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.53752 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 142 REMARK 465 HIS A 143 REMARK 465 MET A 144 REMARK 465 PRO A 145 REMARK 465 PRO A 146 REMARK 465 PRO A 147 REMARK 465 GLY A 148 REMARK 465 ARG A 149 REMARK 465 GLY B 148 REMARK 465 ARG B 149 REMARK 465 VAL B 150 REMARK 465 GLY C 61 REMARK 465 LEU C 207 REMARK 465 PRO D 142 REMARK 465 HIS D 143 REMARK 465 MET D 144 REMARK 465 PRO D 145 REMARK 465 PRO D 146 REMARK 465 PRO D 147 REMARK 465 GLY D 148 REMARK 465 ARG D 149 REMARK 465 VAL D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS C 198 O HOH C 5373 1.40 REMARK 500 HH TYR C 125 O HOH C 5331 1.50 REMARK 500 HH22 ARG A 162 O2 SO4 A 5202 1.57 REMARK 500 O3 SO4 C 5203 O HOH C 5357 1.91 REMARK 500 OE1 GLN D 165 O HOH D 5343 1.94 REMARK 500 O HOH C 5335 O HOH C 5351 1.96 REMARK 500 OH TYR C 125 O HOH C 5331 2.05 REMARK 500 O HOH D 5347 O HOH D 5349 2.08 REMARK 500 O TYR A 125 O HOH A 5371 2.09 REMARK 500 O ASP B 109 O HOH B 5340 2.10 REMARK 500 O HOH B 5337 O HOH B 5338 2.11 REMARK 500 O HOH C 5308 O HOH C 5320 2.12 REMARK 500 O HOH A 5313 O HOH A 5321 2.12 REMARK 500 O HOH C 5366 O HOH C 5373 2.14 REMARK 500 O SER A 151 O HOH A 5334 2.18 REMARK 500 O ILE A 66 O HOH A 5301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 5311 O HOH D 5307 2647 1.90 REMARK 500 O HOH B 5309 O HOH D 5304 2647 2.15 REMARK 500 O HOH C 5312 O HOH C 5319 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 96 CB CYS C 96 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 190 -138.16 47.67 REMARK 500 ASN B 177 3.29 -69.69 REMARK 500 LEU B 190 -142.62 53.78 REMARK 500 ARG C 149 81.94 -67.92 REMARK 500 PRO C 194 -16.72 -43.55 REMARK 500 ALA C 205 138.07 -171.73 REMARK 500 ALA D 62 71.61 -116.47 REMARK 500 ARG D 84 154.18 -46.57 REMARK 500 LEU D 190 -134.91 54.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 62 MET D 63 147.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 5203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN D 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 5203 DBREF 4WUJ A 65 207 UNP G0RUC2 G0RUC2_HYPJQ 65 207 DBREF 4WUJ B 65 207 UNP G0RUC2 G0RUC2_HYPJQ 65 207 DBREF 4WUJ C 65 207 UNP G0RUC2 G0RUC2_HYPJQ 65 207 DBREF 4WUJ D 65 207 UNP G0RUC2 G0RUC2_HYPJQ 65 207 SEQADV 4WUJ GLY A 61 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ALA A 62 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ MET A 63 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ASP A 64 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ GLY B 61 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ALA B 62 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ MET B 63 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ASP B 64 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ GLY C 61 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ALA C 62 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ MET C 63 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ASP C 64 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ GLY D 61 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ALA D 62 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ MET D 63 UNP G0RUC2 EXPRESSION TAG SEQADV 4WUJ ASP D 64 UNP G0RUC2 EXPRESSION TAG SEQRES 1 A 147 GLY ALA MET ASP GLY ILE TYR SER ALA SER GLY ILE ASP SEQRES 2 A 147 VAL MET GLY ILE LEU LEU ARG ILE ALA SER ARG PRO ASN SEQRES 3 A 147 PRO THR ILE ASP LEU GLY PRO LEU ASP CYS SER VAL SER SEQRES 4 A 147 LEU THR LEU CYS ASP ILE SER LEU PRO ASP ALA PRO ILE SEQRES 5 A 147 VAL TYR ALA SER PRO GLY PHE TYR GLN LEU THR GLY TYR SEQRES 6 A 147 SER ALA PRO GLU ILE MET GLY ARG ASN CYS ARG PHE LEU SEQRES 7 A 147 GLN ASN SER PRO HIS MET PRO PRO PRO GLY ARG VAL SER SEQRES 8 A 147 ASP ALA VAL GLN GLU MET ARG ARG ALA ILE ARG ALA HIS SEQRES 9 A 147 GLN GLU VAL GLN VAL ARG ILE VAL ASN TYR LYS LYS ASN SEQRES 10 A 147 GLY THR PRO PHE THR ASN VAL VAL THR ILE LEU PRO LEU SEQRES 11 A 147 TRP ALA ASP PRO SER GLY HIS HIS PHE ALA VAL GLY LEU SEQRES 12 A 147 GLN ALA GLU LEU SEQRES 1 B 147 GLY ALA MET ASP GLY ILE TYR SER ALA SER GLY ILE ASP SEQRES 2 B 147 VAL MET GLY ILE LEU LEU ARG ILE ALA SER ARG PRO ASN SEQRES 3 B 147 PRO THR ILE ASP LEU GLY PRO LEU ASP CYS SER VAL SER SEQRES 4 B 147 LEU THR LEU CYS ASP ILE SER LEU PRO ASP ALA PRO ILE SEQRES 5 B 147 VAL TYR ALA SER PRO GLY PHE TYR GLN LEU THR GLY TYR SEQRES 6 B 147 SER ALA PRO GLU ILE MET GLY ARG ASN CYS ARG PHE LEU SEQRES 7 B 147 GLN ASN SER PRO HIS MET PRO PRO PRO GLY ARG VAL SER SEQRES 8 B 147 ASP ALA VAL GLN GLU MET ARG ARG ALA ILE ARG ALA HIS SEQRES 9 B 147 GLN GLU VAL GLN VAL ARG ILE VAL ASN TYR LYS LYS ASN SEQRES 10 B 147 GLY THR PRO PHE THR ASN VAL VAL THR ILE LEU PRO LEU SEQRES 11 B 147 TRP ALA ASP PRO SER GLY HIS HIS PHE ALA VAL GLY LEU SEQRES 12 B 147 GLN ALA GLU LEU SEQRES 1 C 147 GLY ALA MET ASP GLY ILE TYR SER ALA SER GLY ILE ASP SEQRES 2 C 147 VAL MET GLY ILE LEU LEU ARG ILE ALA SER ARG PRO ASN SEQRES 3 C 147 PRO THR ILE ASP LEU GLY PRO LEU ASP CYS SER VAL SER SEQRES 4 C 147 LEU THR LEU CYS ASP ILE SER LEU PRO ASP ALA PRO ILE SEQRES 5 C 147 VAL TYR ALA SER PRO GLY PHE TYR GLN LEU THR GLY TYR SEQRES 6 C 147 SER ALA PRO GLU ILE MET GLY ARG ASN CYS ARG PHE LEU SEQRES 7 C 147 GLN ASN SER PRO HIS MET PRO PRO PRO GLY ARG VAL SER SEQRES 8 C 147 ASP ALA VAL GLN GLU MET ARG ARG ALA ILE ARG ALA HIS SEQRES 9 C 147 GLN GLU VAL GLN VAL ARG ILE VAL ASN TYR LYS LYS ASN SEQRES 10 C 147 GLY THR PRO PHE THR ASN VAL VAL THR ILE LEU PRO LEU SEQRES 11 C 147 TRP ALA ASP PRO SER GLY HIS HIS PHE ALA VAL GLY LEU SEQRES 12 C 147 GLN ALA GLU LEU SEQRES 1 D 147 GLY ALA MET ASP GLY ILE TYR SER ALA SER GLY ILE ASP SEQRES 2 D 147 VAL MET GLY ILE LEU LEU ARG ILE ALA SER ARG PRO ASN SEQRES 3 D 147 PRO THR ILE ASP LEU GLY PRO LEU ASP CYS SER VAL SER SEQRES 4 D 147 LEU THR LEU CYS ASP ILE SER LEU PRO ASP ALA PRO ILE SEQRES 5 D 147 VAL TYR ALA SER PRO GLY PHE TYR GLN LEU THR GLY TYR SEQRES 6 D 147 SER ALA PRO GLU ILE MET GLY ARG ASN CYS ARG PHE LEU SEQRES 7 D 147 GLN ASN SER PRO HIS MET PRO PRO PRO GLY ARG VAL SER SEQRES 8 D 147 ASP ALA VAL GLN GLU MET ARG ARG ALA ILE ARG ALA HIS SEQRES 9 D 147 GLN GLU VAL GLN VAL ARG ILE VAL ASN TYR LYS LYS ASN SEQRES 10 D 147 GLY THR PRO PHE THR ASN VAL VAL THR ILE LEU PRO LEU SEQRES 11 D 147 TRP ALA ASP PRO SER GLY HIS HIS PHE ALA VAL GLY LEU SEQRES 12 D 147 GLN ALA GLU LEU HET FMN A5201 50 HET SO4 A5202 5 HET FMN B5201 50 HET SO4 B5202 5 HET FMN C5201 50 HET SO4 C5202 5 HET SO4 C5203 5 HET FMN D5201 50 HET SO4 D5202 5 HET SO4 D5203 5 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM SO4 SULFATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 6 SO4 6(O4 S 2-) FORMUL 15 HOH *251(H2 O) HELIX 1 AA1 ASP A 73 SER A 83 1 11 HELIX 2 AA2 SER A 116 GLY A 124 1 9 HELIX 3 AA3 SER A 126 MET A 131 1 6 HELIX 4 AA4 ASN A 134 ASN A 140 5 7 HELIX 5 AA5 SER A 151 ALA A 163 1 13 HELIX 6 AA6 ASP B 73 SER B 83 1 11 HELIX 7 AA7 SER B 116 GLY B 124 1 9 HELIX 8 AA8 SER B 126 MET B 131 1 6 HELIX 9 AA9 ASN B 134 ASN B 140 5 7 HELIX 10 AB1 ASP B 152 HIS B 164 1 13 HELIX 11 AB2 ASP C 73 SER C 83 1 11 HELIX 12 AB3 SER C 116 GLY C 124 1 9 HELIX 13 AB4 SER C 126 MET C 131 1 6 HELIX 14 AB5 ASN C 134 ASN C 140 5 7 HELIX 15 AB6 SER C 151 HIS C 164 1 14 HELIX 16 AB7 ASP D 73 ARG D 84 1 12 HELIX 17 AB8 SER D 116 GLY D 124 1 9 HELIX 18 AB9 SER D 126 MET D 131 1 6 HELIX 19 AC1 ASN D 134 ASN D 140 5 7 HELIX 20 AC2 ASP D 152 ALA D 163 1 12 SHEET 1 AA1 5 ILE A 112 ALA A 115 0 SHEET 2 AA1 5 SER A 99 ASP A 104 -1 N LEU A 102 O TYR A 114 SHEET 3 AA1 5 PHE A 199 GLN A 204 -1 O ALA A 200 N CYS A 103 SHEET 4 AA1 5 PRO A 180 LEU A 188 -1 N THR A 186 O LEU A 203 SHEET 5 AA1 5 VAL A 167 TYR A 174 -1 N ASN A 173 O PHE A 181 SHEET 1 AA2 5 ILE B 112 ALA B 115 0 SHEET 2 AA2 5 SER B 99 ASP B 104 -1 N LEU B 102 O TYR B 114 SHEET 3 AA2 5 PHE B 199 GLN B 204 -1 O ALA B 200 N CYS B 103 SHEET 4 AA2 5 PRO B 180 LEU B 188 -1 N LEU B 188 O VAL B 201 SHEET 5 AA2 5 VAL B 167 TYR B 174 -1 N ASN B 173 O PHE B 181 SHEET 1 AA3 5 ILE C 112 ALA C 115 0 SHEET 2 AA3 5 SER C 99 ASP C 104 -1 N LEU C 102 O VAL C 113 SHEET 3 AA3 5 PHE C 199 GLN C 204 -1 O ALA C 200 N CYS C 103 SHEET 4 AA3 5 PRO C 180 PRO C 189 -1 N LEU C 188 O VAL C 201 SHEET 5 AA3 5 VAL C 167 TYR C 174 -1 N VAL C 167 O ILE C 187 SHEET 1 AA4 5 ILE D 112 ALA D 115 0 SHEET 2 AA4 5 SER D 99 ASP D 104 -1 N LEU D 102 O VAL D 113 SHEET 3 AA4 5 PHE D 199 GLN D 204 -1 O GLY D 202 N THR D 101 SHEET 4 AA4 5 PRO D 180 LEU D 188 -1 N LEU D 188 O VAL D 201 SHEET 5 AA4 5 VAL D 167 TYR D 174 -1 N VAL D 167 O ILE D 187 CISPEP 1 GLY B 61 ALA B 62 0 1.06 SITE 1 AC1 22 THR A 101 CYS A 103 ASN A 134 CYS A 135 SITE 2 AC1 22 ARG A 136 LEU A 138 GLN A 139 VAL A 154 SITE 3 AC1 22 ARG A 158 ILE A 161 ASN A 173 ASN A 183 SITE 4 AC1 22 ILE A 187 ALA A 200 VAL A 201 GLY A 202 SITE 5 AC1 22 GLN A 204 HOH A5331 HOH A5333 HOH A5341 SITE 6 AC1 22 HOH A5346 HOH A5349 SITE 1 AC2 5 GLN A 155 ARG A 158 ARG A 159 ARG A 162 SITE 2 AC2 5 HOH A5372 SITE 1 AC3 21 THR B 101 CYS B 103 ASN B 134 CYS B 135 SITE 2 AC3 21 ARG B 136 LEU B 138 GLN B 139 VAL B 154 SITE 3 AC3 21 ARG B 158 ILE B 161 ILE B 171 ASN B 173 SITE 4 AC3 21 ASN B 183 VAL B 185 ALA B 200 VAL B 201 SITE 5 AC3 21 GLY B 202 GLN B 204 HOH B5319 HOH B5320 SITE 6 AC3 21 HOH B5327 SITE 1 AC4 4 GLN B 155 ARG B 158 ARG B 159 ARG B 162 SITE 1 AC5 25 THR C 101 CYS C 103 ASN C 134 CYS C 135 SITE 2 AC5 25 ARG C 136 LEU C 138 GLN C 139 VAL C 154 SITE 3 AC5 25 MET C 157 ARG C 158 ILE C 161 ILE C 171 SITE 4 AC5 25 ASN C 173 ASN C 183 VAL C 185 ILE C 187 SITE 5 AC5 25 ALA C 200 GLY C 202 GLN C 204 HOH C5323 SITE 6 AC5 25 HOH C5328 HOH C5340 HOH C5344 HOH C5350 SITE 7 AC5 25 HOH C5354 SITE 1 AC6 6 ARG A 158 ARG A 162 HOH A5346 ARG C 158 SITE 2 AC6 6 ARG C 159 ARG C 162 SITE 1 AC7 7 ASP A 109 ARG C 158 ARG C 162 HOH C5324 SITE 2 AC7 7 HOH C5338 HOH C5344 HOH C5357 SITE 1 AC8 22 THR D 101 CYS D 103 ASN D 134 CYS D 135 SITE 2 AC8 22 ARG D 136 LEU D 138 GLN D 139 VAL D 154 SITE 3 AC8 22 MET D 157 ARG D 158 ILE D 161 ILE D 171 SITE 4 AC8 22 ASN D 173 ASN D 183 VAL D 185 ILE D 187 SITE 5 AC8 22 GLY D 202 GLN D 204 HOH D5312 HOH D5318 SITE 6 AC8 22 HOH D5319 HOH D5327 SITE 1 AC9 6 ARG D 158 ARG D 162 HOH D5302 HOH D5303 SITE 2 AC9 6 HOH D5304 HOH D5327 SITE 1 AD1 4 GLN D 155 ARG D 158 ARG D 159 ARG D 162 CRYST1 44.342 102.225 71.550 90.00 91.07 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022552 0.000000 0.000421 0.00000 SCALE2 0.000000 0.009782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013979 0.00000