HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-NOV-14 4WUY
TITLE CRYSTAL STRUCTURE OF PROTEIN LYSINE METHYLTRANSFERASE SMYD2 IN COMPLEX
TITLE 2 WITH LLY-507, A CELL-ACTIVE, POTENT AND SELECTIVE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: HSKM-B,HISTONE METHYLTRANSFERASE SMYD2,LYSINE N-
COMPND 5 METHYLTRANSFERASE 3C,SET AND MYND DOMAIN-CONTAINING PROTEIN 2;
COMPND 6 EC: 2.1.1.-,2.1.1.43;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SMYD2, KMT3C;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS SMYD2 - LLY-507, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR H.NGUYEN,A.ALLALI-HASSANI,S.ANTONYSAMY,S.CHANG,L.H.CHEN,C.CURTIS,
AUTHOR 2 S.EMTAGE,L.FAN,T.GHEYI,F.LI,S.LIU,J.R.MARTIN,D.MENDEL,J.B.OLSEN,
AUTHOR 3 L.PELLETIER,T.SHATSEVA,S.WU,F.F.ZHANG,C.H.ARROWSMITH,P.J.BROWN,
AUTHOR 4 R.M.CAMPBELL,B.A.GARCIA,D.BARSYTE-LOVEJOY,M.MADER,M.VEDADI
REVDAT 4 27-DEC-23 4WUY 1 SOURCE JRNL REMARK
REVDAT 3 10-JUN-15 4WUY 1 JRNL
REVDAT 2 15-APR-15 4WUY 1 JRNL
REVDAT 1 08-APR-15 4WUY 0
JRNL AUTH H.NGUYEN,A.ALLALI-HASSANI,S.ANTONYSAMY,S.CHANG,L.H.CHEN,
JRNL AUTH 2 C.CURTIS,S.EMTAGE,L.FAN,T.GHEYI,F.LI,S.LIU,J.R.MARTIN,
JRNL AUTH 3 D.MENDEL,J.B.OLSEN,L.PELLETIER,T.SHATSEVA,S.WU,F.F.ZHANG,
JRNL AUTH 4 C.H.ARROWSMITH,P.J.BROWN,R.M.CAMPBELL,B.A.GARCIA,
JRNL AUTH 5 D.BARSYTE-LOVEJOY,M.MADER,M.VEDADI
JRNL TITL LLY-507, A CELL-ACTIVE, POTENT, AND SELECTIVE INHIBITOR OF
JRNL TITL 2 PROTEIN-LYSINE METHYLTRANSFERASE SMYD2.
JRNL REF J.BIOL.CHEM. V. 290 13641 2015
JRNL REFN ESSN 1083-351X
JRNL PMID 25825497
JRNL DOI 10.1074/JBC.M114.626861
REMARK 2
REMARK 2 RESOLUTION. 1.63 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0049
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5
REMARK 3 NUMBER OF REFLECTIONS : 62742
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.154
REMARK 3 R VALUE (WORKING SET) : 0.151
REMARK 3 FREE R VALUE : 0.200
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 3340
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67
REMARK 3 REFLECTION IN BIN (WORKING SET) : 4496
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.08
REMARK 3 BIN R VALUE (WORKING SET) : 0.2440
REMARK 3 BIN FREE R VALUE SET COUNT : 214
REMARK 3 BIN FREE R VALUE : 0.2720
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3218
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 91
REMARK 3 SOLVENT ATOMS : 430
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.62000
REMARK 3 B22 (A**2) : -0.08000
REMARK 3 B33 (A**2) : -0.54000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.092
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.253
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3437 ; 0.005 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4655 ; 1.004 ; 1.989
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 4.856 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;35.013 ;24.138
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;11.212 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.663 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.070 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2604 ; 0.004 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1696 ; 6.501 ;34.650
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2127 ; 7.336 ;54.376
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1741 ; 6.598 ;38.118
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5754 ; 7.477 ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3437 ; 0.727 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): 112 ;24.155 ; 5.000
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3682 ;21.416 ; 5.000
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4WUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-14.
REMARK 100 THE DEPOSITION ID IS D_1000204547.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 02-JUN-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.6
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 31-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66084
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630
REMARK 200 RESOLUTION RANGE LOW (A) : 19.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 200 DATA REDUNDANCY : 7.500
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.42
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS HCL PH 8.6, 14% PEG 20K
REMARK 280 AND 200 MM SODIUM CHLORIDE, PH 9.0, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 281K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.51250
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.96000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.51250
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.96000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 810 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ARG A 2
REMARK 465 ALA A 3
REMARK 465 GLU A 4
REMARK 465 LYS A 281
REMARK 465 LEU A 282
REMARK 465 SER A 283
REMARK 465 ASP A 284
REMARK 465 PRO A 285
REMARK 465 PRO A 286
REMARK 465 ARG A 307
REMARK 465 ALA A 308
REMARK 465 LYS A 309
REMARK 465 HIS A 310
REMARK 465 TYR A 311
REMARK 465 LYS A 312
REMARK 465 SER A 313
REMARK 465 PRO A 314
REMARK 465 SER A 315
REMARK 465 GLU A 434
REMARK 465 GLY A 435
REMARK 465 HIS A 436
REMARK 465 HIS A 437
REMARK 465 HIS A 438
REMARK 465 HIS A 439
REMARK 465 HIS A 440
REMARK 465 HIS A 441
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 60 CD OE1 OE2
REMARK 470 GLU A 121 CD OE1 OE2
REMARK 470 ARG A 253 CZ NH1 NH2
REMARK 470 GLN A 265 CG CD OE1 NE2
REMARK 470 LYS A 274 CG CD CE NZ
REMARK 470 LYS A 287 CG CD CE NZ
REMARK 470 GLU A 289 CG CD OE1 OE2
REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2
REMARK 470 ASN A 300 CG OD1 ND2
REMARK 470 VAL A 301 CG1 CG2
REMARK 470 GLU A 303 CG CD OE1 OE2
REMARK 470 GLU A 304 CG CD OE1 OE2
REMARK 470 PHE A 305 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 316 CG CD OE1 OE2
REMARK 470 LEU A 317 CG CD1 CD2
REMARK 470 GLU A 319 CG CD OE1 OE2
REMARK 470 ILE A 320 CG1 CG2 CD1
REMARK 470 GLU A 322 CG CD OE1 OE2
REMARK 470 LEU A 323 CG CD1 CD2
REMARK 470 SER A 324 OG
REMARK 470 GLU A 326 CG CD OE1 OE2
REMARK 470 LYS A 327 CG CD CE NZ
REMARK 470 SER A 329 OG
REMARK 470 SER A 330 OG
REMARK 470 VAL A 331 CG1 CG2
REMARK 470 GLU A 333 CG CD OE1 OE2
REMARK 470 VAL A 349 CG1 CG2
REMARK 470 GLN A 428 CG CD OE1 NE2
REMARK 470 GLU A 431 CG CD OE1 OE2
REMARK 470 SER A 432 OG
REMARK 470 HIS A 433 CG ND1 CD2 CE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 101 39.26 -145.26
REMARK 500 CYS A 210 70.12 -117.54
REMARK 500 VAL A 277 54.95 -103.82
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 508 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 52 SG
REMARK 620 2 CYS A 55 SG 107.7
REMARK 620 3 CYS A 74 SG 104.7 99.6
REMARK 620 4 CYS A 78 SG 107.7 121.6 114.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 506 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 65 SG
REMARK 620 2 CYS A 68 SG 111.1
REMARK 620 3 HIS A 86 NE2 113.7 100.9
REMARK 620 4 CYS A 90 SG 110.0 115.1 105.8
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 507 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 209 SG
REMARK 620 2 CYS A 262 SG 113.4
REMARK 620 3 CYS A 264 SG 109.1 104.7
REMARK 620 4 CYS A 267 SG 98.9 115.6 115.4
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 3UJ A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 507
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 508
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 509
DBREF 4WUY A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433
SEQADV 4WUY GLU A 434 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY GLY A 435 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY HIS A 436 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY HIS A 437 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY HIS A 438 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY HIS A 439 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY HIS A 440 UNP Q9NRG4 EXPRESSION TAG
SEQADV 4WUY HIS A 441 UNP Q9NRG4 EXPRESSION TAG
SEQRES 1 A 441 MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS
SEQRES 2 A 441 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO
SEQRES 3 A 441 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR
SEQRES 4 A 441 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS
SEQRES 5 A 441 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS
SEQRES 6 A 441 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS
SEQRES 7 A 441 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER
SEQRES 8 A 441 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU
SEQRES 9 A 441 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS
SEQRES 10 A 441 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA
SEQRES 11 A 441 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN
SEQRES 12 A 441 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU
SEQRES 13 A 441 HIS HIS PHE TYR SER LYS HIS LEU GLY PHE PRO ASP ASN
SEQRES 14 A 441 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN
SEQRES 15 A 441 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY
SEQRES 16 A 441 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER
SEQRES 17 A 441 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU
SEQRES 18 A 441 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU
SEQRES 19 A 441 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR
SEQRES 20 A 441 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE
SEQRES 21 A 441 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP
SEQRES 22 A 441 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO
SEQRES 23 A 441 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG
SEQRES 24 A 441 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS
SEQRES 25 A 441 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN
SEQRES 26 A 441 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR
SEQRES 27 A 441 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS LEU
SEQRES 28 A 441 TYR MET GLN ASP TRP GLU GLY ALA LEU GLN TYR GLY GLN
SEQRES 29 A 441 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR
SEQRES 30 A 441 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG
SEQRES 31 A 441 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS
SEQRES 32 A 441 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS
SEQRES 33 A 441 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU
SEQRES 34 A 441 ILE GLU SER HIS GLU GLY HIS HIS HIS HIS HIS HIS
HET 3UJ A 501 43
HET SAH A 502 26
HET GOL A 503 6
HET GOL A 504 6
HET GOL A 505 6
HET ZN A 506 1
HET ZN A 507 1
HET ZN A 508 1
HET ZN A 509 1
HETNAM 3UJ 5-CYANO-2'-{4-[2-(3-METHYL-1H-INDOL-1-YL)
HETNAM 2 3UJ ETHYL]PIPERAZIN-1-YL}-N-[3-(PYRROLIDIN-1-YL)
HETNAM 3 3UJ PROPYL]BIPHENYL-3-CARBOXAMIDE
HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE
HETNAM GOL GLYCEROL
HETNAM ZN ZINC ION
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 3UJ C36 H42 N6 O
FORMUL 3 SAH C14 H20 N6 O5 S
FORMUL 4 GOL 3(C3 H8 O3)
FORMUL 7 ZN 4(ZN 2+)
FORMUL 11 HOH *430(H2 O)
HELIX 1 AA1 VAL A 45 ARG A 48 5 4
HELIX 2 AA2 ASN A 75 LYS A 87 1 13
HELIX 3 AA3 GLU A 89 GLY A 97 1 9
HELIX 4 AA4 GLU A 98 TRP A 100 5 3
HELIX 5 AA5 SER A 103 HIS A 119 1 17
HELIX 6 AA6 ALA A 130 PHE A 134 5 5
HELIX 7 AA7 HIS A 137 LEU A 141 5 5
HELIX 8 AA8 ASP A 142 GLY A 165 1 24
HELIX 9 AA9 ASP A 168 GLY A 183 1 16
HELIX 10 AB1 PHE A 199 LEU A 204 1 6
HELIX 11 AB2 PRO A 246 PHE A 259 1 14
HELIX 12 AB3 CYS A 264 LYS A 270 1 7
HELIX 13 AB4 LYS A 272 VAL A 277 1 6
HELIX 14 AB5 ALA A 288 ARG A 306 1 19
HELIX 15 AB6 LEU A 317 SER A 330 1 14
HELIX 16 AB7 ASN A 336 GLN A 354 1 19
HELIX 17 AB8 ASP A 355 TYR A 374 1 20
HELIX 18 AB9 SER A 378 LEU A 395 1 18
HELIX 19 AC1 HIS A 397 HIS A 416 1 20
HELIX 20 AC2 HIS A 420 HIS A 433 1 14
SHEET 1 AA1 2 LEU A 9 SER A 14 0
SHEET 2 AA1 2 GLY A 18 ALA A 23 -1 O ARG A 22 N GLU A 10
SHEET 1 AA2 3 LEU A 32 PRO A 37 0
SHEET 2 AA2 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33
SHEET 3 AA2 3 VAL A 213 LYS A 218 -1 N THR A 216 O GLU A 223
SHEET 1 AA3 3 ALA A 40 LEU A 43 0
SHEET 2 AA3 3 HIS A 193 ILE A 198 -1 O ILE A 198 N ALA A 40
SHEET 3 AA3 3 PHE A 184 GLU A 187 -1 N ILE A 186 O LEU A 194
SHEET 1 AA4 2 SER A 63 LYS A 64 0
SHEET 2 AA4 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63
SHEET 1 AA5 2 ASN A 206 HIS A 207 0
SHEET 2 AA5 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206
LINK SG CYS A 52 ZN ZN A 508 1555 1555 2.36
LINK SG CYS A 55 ZN ZN A 508 1555 1555 2.30
LINK SG CYS A 65 ZN ZN A 506 1555 1555 2.32
LINK SG CYS A 68 ZN ZN A 506 1555 1555 2.30
LINK SG CYS A 74 ZN ZN A 508 1555 1555 2.35
LINK SG CYS A 78 ZN ZN A 508 1555 1555 2.33
LINK NE2 HIS A 86 ZN ZN A 506 1555 1555 2.05
LINK SG CYS A 90 ZN ZN A 506 1555 1555 2.32
LINK SG CYS A 209 ZN ZN A 507 1555 1555 2.38
LINK SG ACYS A 210 ZN ZN A 509 1555 1555 2.15
LINK SG CYS A 262 ZN ZN A 507 1555 1555 2.32
LINK SG CYS A 264 ZN ZN A 507 1555 1555 2.34
LINK SG CYS A 267 ZN ZN A 507 1555 1555 2.29
SITE 1 AC1 16 LEU A 141 LYS A 145 ALA A 177 ASN A 180
SITE 2 AC1 16 CYS A 181 ASN A 182 GLY A 183 PHE A 184
SITE 3 AC1 16 THR A 185 TYR A 240 SER A 257 TYR A 258
SITE 4 AC1 16 PHE A 259 HOH A 698 HOH A 751 HOH A 778
SITE 1 AC2 18 GLY A 16 LYS A 17 ARG A 19 HIS A 137
SITE 2 AC2 18 CYS A 181 ALA A 203 LEU A 204 ASN A 206
SITE 3 AC2 18 HIS A 207 TYR A 240 TYR A 258 PHE A 260
SITE 4 AC2 18 HOH A 700 HOH A 737 HOH A 777 HOH A 799
SITE 5 AC2 18 HOH A 874 HOH A 892
SITE 1 AC3 7 VAL A 76 GLU A 77 LYS A 140 PHE A 259
SITE 2 AC3 7 HOH A 602 HOH A 626 HOH A 660
SITE 1 AC4 8 ALA A 38 TYR A 39 TYR A 41 LYS A 115
SITE 2 AC4 8 HOH A 742 HOH A 750 HOH A 762 HOH A 828
SITE 1 AC5 7 LEU A 243 ARG A 250 LYS A 272 LYS A 276
SITE 2 AC5 7 HIS A 373 TYR A 374 PRO A 375
SITE 1 AC6 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90
SITE 1 AC7 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267
SITE 1 AC8 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78
SITE 1 AC9 2 CYS A 210 GLU A 266
CRYST1 89.025 99.920 60.297 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011233 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010008 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016584 0.00000