HEADER APOPTOSIS 07-NOV-14 4WVT
TITLE CRYSTAL STRUCTURE OF XIAP-BIR2 DOMAIN COMPLEXED WITH LIGAND BOUND
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE XIAP;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4,IAP-LIKE
COMPND 5 PROTEIN,HILP,INHIBITOR OF APOPTOSIS PROTEIN 3,HIAP3,X-LINKED
COMPND 6 INHIBITOR OF APOPTOSIS PROTEIN,X-LINKED IAP;
COMPND 7 EC: 6.3.2.-;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES;
COMPND 10 MOL_ID: 2;
COMPND 11 MOLECULE: 3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-
COMPND 12 13-IUM;
COMPND 13 CHAIN: C, D;
COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: XIAP, API3, BIRC4, IAP3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES
KEYWDS IAP, XIAP-BIR2, APOPTOSIS
EXPDTA X-RAY DIFFRACTION
AUTHOR M.E.POKROSS
REVDAT 2 08-APR-15 4WVT 1 JRNL
REVDAT 1 04-MAR-15 4WVT 0
JRNL AUTH B.A.SEIGAL,W.H.CONNORS,A.FRALEY,R.M.BORZILLERI,P.H.CARTER,
JRNL AUTH 2 S.L.EMANUEL,J.FARGNOLI,K.KIM,M.LEI,J.G.NAGLICH,M.E.POKROSS,
JRNL AUTH 3 S.L.POSY,H.SHEN,N.SURTI,R.TALBOTT,Y.ZHANG,N.K.TERRETT
JRNL TITL THE DISCOVERY OF MACROCYCLIC XIAP ANTAGONISTS FROM A
JRNL TITL 2 DNA-PROGRAMMED CHEMISTRY LIBRARY, AND THEIR OPTIMIZATION TO
JRNL TITL 3 GIVE LEAD COMPOUNDS WITH IN VIVO ANTITUMOR ACTIVITY.
JRNL REF J.MED.CHEM. V. 58 2855 2015
JRNL REFN ISSN 0022-2623
JRNL PMID 25695766
JRNL DOI 10.1021/JM501892G
REMARK 2
REMARK 2 RESOLUTION. 1.96 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.5
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.15
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8
REMARK 3 NUMBER OF REFLECTIONS : 10025
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.177
REMARK 3 R VALUE (WORKING SET) : 0.174
REMARK 3 FREE R VALUE : 0.230
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980
REMARK 3 FREE R VALUE TEST SET COUNT : 499
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.19
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.75
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2567
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1852
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2443
REMARK 3 BIN R VALUE (WORKING SET) : 0.1831
REMARK 3 BIN FREE R VALUE : 0.2213
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.83
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1401
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 2
REMARK 3 SOLVENT ATOMS : 165
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 21.09
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.75
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.14270
REMARK 3 B22 (A**2) : 3.28870
REMARK 3 B33 (A**2) : -6.43140
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.90860
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.209
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.247
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.185
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.236
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.181
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1561 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2210 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 514 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 31 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 315 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1561 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 161 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1871 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.97
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.83
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.05
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 6.1617 0.1779 1.3407
REMARK 3 T TENSOR
REMARK 3 T11: -0.0556 T22: -0.0409
REMARK 3 T33: 0.0182 T12: 0.0056
REMARK 3 T13: -0.0013 T23: -0.0053
REMARK 3 L TENSOR
REMARK 3 L11: 1.6572 L22: 1.3952
REMARK 3 L33: 1.1036 L12: 0.2785
REMARK 3 L13: 0.0338 L23: -0.3535
REMARK 3 S TENSOR
REMARK 3 S11: 0.0478 S12: -0.0475 S13: -0.0185
REMARK 3 S21: 0.0446 S22: 0.0010 S23: -0.0818
REMARK 3 S31: 0.0806 S32: 0.0022 S33: -0.0488
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 10.3580 9.4468 -26.9902
REMARK 3 T TENSOR
REMARK 3 T11: -0.0647 T22: -0.0490
REMARK 3 T33: 0.0030 T12: 0.0093
REMARK 3 T13: 0.0074 T23: 0.0000
REMARK 3 L TENSOR
REMARK 3 L11: 2.0080 L22: 1.8375
REMARK 3 L33: 1.1993 L12: 0.5110
REMARK 3 L13: -0.2699 L23: 0.2357
REMARK 3 S TENSOR
REMARK 3 S11: 0.0347 S12: -0.0872 S13: 0.0326
REMARK 3 S21: 0.0747 S22: 0.0020 S23: 0.0627
REMARK 3 S31: -0.0754 S32: -0.0116 S33: -0.0367
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4WVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-14.
REMARK 100 THE DEPOSITION ID IS D_1000204595.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-SEP-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : MICOMAX
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL
REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10044
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2
REMARK 200 DATA REDUNDANCY : 3.100
REMARK 200 R MERGE (I) : 0.11000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00
REMARK 200 COMPLETENESS FOR SHELL (%) : 75.3
REMARK 200 DATA REDUNDANCY IN SHELL : 2.30
REMARK 200 R MERGE FOR SHELL (I) : 0.31100
REMARK 200 R SYM FOR SHELL (I) : 0.00000
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 28.73
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.67
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: .98 M AMMONIUM SULFATE AND .1M
REMARK 280 AMMONIUM FORMATE. SINGLE CRYSTALS FORMED AFTER STREAK SEEDING.,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.26500
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 5190 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 5190 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400
REMARK 400 COMPOUND
REMARK 400
REMARK 400 THE (3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-13-
REMARK 400 IUM IS CYCLIC PEPTIDE, A MEMBER OF ANTAGONIST CLASS.
REMARK 400
REMARK 400 GROUP: 1
REMARK 400 NAME: (3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-
REMARK 400 13-IUM
REMARK 400 CHAIN: C, D
REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER
REMARK 400 DESCRIPTION: NULL
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -22
REMARK 465 GLY A -21
REMARK 465 SER A -20
REMARK 465 SER A -19
REMARK 465 HIS A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 SER A -12
REMARK 465 SER A -11
REMARK 465 GLY A -10
REMARK 465 GLU A -9
REMARK 465 THR A -8
REMARK 465 VAL A -7
REMARK 465 ARG A -6
REMARK 465 PHE A -5
REMARK 465 GLN A -4
REMARK 465 MET B -22
REMARK 465 GLY B -21
REMARK 465 SER B -20
REMARK 465 SER B -19
REMARK 465 HIS B -18
REMARK 465 HIS B -17
REMARK 465 HIS B -16
REMARK 465 HIS B -15
REMARK 465 HIS B -14
REMARK 465 HIS B -13
REMARK 465 SER B -12
REMARK 465 SER B -11
REMARK 465 GLY B -10
REMARK 465 GLU B -9
REMARK 465 THR B -8
REMARK 465 VAL B -7
REMARK 465 ARG B -6
REMARK 465 PHE B -5
REMARK 465 GLN B -4
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASP A 175 CG OD1 OD2
REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 301 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 200 SG
REMARK 620 2 CYS A 203 SG 109.2
REMARK 620 3 HIS A 220 NE2 98.9 117.1
REMARK 620 4 CYS A 227 SG 114.1 111.5 105.6
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 301 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B 200 SG
REMARK 620 2 CYS B 203 SG 109.5
REMARK 620 3 HIS B 220 NE2 98.5 117.2
REMARK 620 4 CYS B 227 SG 114.5 111.1 105.6
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF 3,11-DIFLUORO-6,8,13
REMARK 800 -TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN- 13-IUM
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF 3,11-DIFLUORO-6,8,13
REMARK 800 -TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN- 13-IUM
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4WVS RELATED DB: PDB
REMARK 900 RELATED ID: 4WVU RELATED DB: PDB
DBREF 4WVT A 156 231 UNP P98170 XIAP_HUMAN 156 231
DBREF 4WVT B 156 231 UNP P98170 XIAP_HUMAN 156 231
DBREF 4WVT C 1 6 PDB 4WVT 4WVT 1 6
DBREF 4WVT D 1 6 PDB 4WVT 4WVT 1 6
SEQADV 4WVT MET A -22 UNP P98170 INITIATING METHIONINE
SEQADV 4WVT GLY A -21 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER A -20 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER A -19 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -18 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -17 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -16 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -15 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -14 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -13 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER A -12 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER A -11 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLY A -10 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLU A -9 UNP P98170 EXPRESSION TAG
SEQADV 4WVT THR A -8 UNP P98170 EXPRESSION TAG
SEQADV 4WVT VAL A -7 UNP P98170 EXPRESSION TAG
SEQADV 4WVT ARG A -6 UNP P98170 EXPRESSION TAG
SEQADV 4WVT PHE A -5 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLN A -4 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLY A -3 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS A -2 UNP P98170 EXPRESSION TAG
SEQADV 4WVT MET A -1 UNP P98170 EXPRESSION TAG
SEQADV 4WVT ALA A 202 UNP P98170 CYS 202 ENGINEERED MUTATION
SEQADV 4WVT GLY A 213 UNP P98170 CYS 213 ENGINEERED MUTATION
SEQADV 4WVT MET B -22 UNP P98170 INITIATING METHIONINE
SEQADV 4WVT GLY B -21 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER B -20 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER B -19 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -18 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -17 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -16 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -15 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -14 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -13 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER B -12 UNP P98170 EXPRESSION TAG
SEQADV 4WVT SER B -11 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLY B -10 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLU B -9 UNP P98170 EXPRESSION TAG
SEQADV 4WVT THR B -8 UNP P98170 EXPRESSION TAG
SEQADV 4WVT VAL B -7 UNP P98170 EXPRESSION TAG
SEQADV 4WVT ARG B -6 UNP P98170 EXPRESSION TAG
SEQADV 4WVT PHE B -5 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLN B -4 UNP P98170 EXPRESSION TAG
SEQADV 4WVT GLY B -3 UNP P98170 EXPRESSION TAG
SEQADV 4WVT HIS B -2 UNP P98170 EXPRESSION TAG
SEQADV 4WVT MET B -1 UNP P98170 EXPRESSION TAG
SEQADV 4WVT ALA B 202 UNP P98170 CYS 202 ENGINEERED MUTATION
SEQADV 4WVT GLY B 213 UNP P98170 CYS 213 ENGINEERED MUTATION
SEQRES 1 A 98 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 98 GLU THR VAL ARG PHE GLN GLY HIS MET ARG ASN PRO ALA
SEQRES 3 A 98 MET TYR SER GLU GLU ALA ARG LEU LYS SER PHE GLN ASN
SEQRES 4 A 98 TRP PRO ASP TYR ALA HIS LEU THR PRO ARG GLU LEU ALA
SEQRES 5 A 98 SER ALA GLY LEU TYR TYR THR GLY ILE GLY ASP GLN VAL
SEQRES 6 A 98 GLN CYS PHE ALA CYS GLY GLY LYS LEU LYS ASN TRP GLU
SEQRES 7 A 98 PRO GLY ASP ARG ALA TRP SER GLU HIS ARG ARG HIS PHE
SEQRES 8 A 98 PRO ASN CYS PHE PHE VAL LEU
SEQRES 1 B 98 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 B 98 GLU THR VAL ARG PHE GLN GLY HIS MET ARG ASN PRO ALA
SEQRES 3 B 98 MET TYR SER GLU GLU ALA ARG LEU LYS SER PHE GLN ASN
SEQRES 4 B 98 TRP PRO ASP TYR ALA HIS LEU THR PRO ARG GLU LEU ALA
SEQRES 5 B 98 SER ALA GLY LEU TYR TYR THR GLY ILE GLY ASP GLN VAL
SEQRES 6 B 98 GLN CYS PHE ALA CYS GLY GLY LYS LEU LYS ASN TRP GLU
SEQRES 7 B 98 PRO GLY ASP ARG ALA TRP SER GLU HIS ARG ARG HIS PHE
SEQRES 8 B 98 PRO ASN CYS PHE PHE VAL LEU
SEQRES 1 C 6 MAA PHE PRO PHE PHE 3V7
SEQRES 1 D 6 MAA PHE PRO PHE PHE 3V7
HET MAA C 1 14
HET 3V7 C 6 20
HET MAA D 1 14
HET 3V7 D 6 20
HET ZN A 301 1
HET ZN B 301 1
HETNAM MAA N-METHYL-L-ALANINE
HETNAM 3V7 3-[4-(HYDROXYMETHYL)-1H-1,2,3-TRIAZOL-1-YL]PROPAN-1-OL
HETNAM ZN ZINC ION
FORMUL 3 MAA 2(C4 H9 N O2)
FORMUL 3 3V7 2(C6 H11 N3 O2)
FORMUL 5 ZN 2(ZN 2+)
FORMUL 7 HOH *165(H2 O)
HELIX 1 AA1 ASN A 157 TYR A 161 5 5
HELIX 2 AA2 SER A 162 PHE A 170 1 9
HELIX 3 AA3 PRO A 174 HIS A 178 5 5
HELIX 4 AA4 THR A 180 ALA A 187 1 8
HELIX 5 AA5 ARG A 215 PHE A 224 1 10
HELIX 6 AA6 ASN B 157 TYR B 161 5 5
HELIX 7 AA7 SER B 162 PHE B 170 1 9
HELIX 8 AA8 PRO B 174 HIS B 178 5 5
HELIX 9 AA9 THR B 180 ALA B 187 1 8
HELIX 10 AB1 ARG B 215 PHE B 224 1 10
SHEET 1 AA1 4 LEU A 189 TYR A 191 0
SHEET 2 AA1 4 VAL A 198 CYS A 200 -1 O GLN A 199 N TYR A 190
SHEET 3 AA1 4 LYS A 206 LYS A 208 -1 O LEU A 207 N VAL A 198
SHEET 4 AA1 4 PHE C 2 PHE C 4 -1 O PHE C 2 N LYS A 208
SHEET 1 AA2 4 LEU B 189 TYR B 191 0
SHEET 2 AA2 4 VAL B 198 CYS B 200 -1 O GLN B 199 N TYR B 190
SHEET 3 AA2 4 LYS B 206 LYS B 208 -1 O LEU B 207 N VAL B 198
SHEET 4 AA2 4 PHE D 2 PHE D 4 -1 O PHE D 2 N LYS B 208
LINK SG CYS A 200 ZN ZN A 301 1555 1555 2.32
LINK SG CYS A 203 ZN ZN A 301 1555 1555 2.31
LINK NE2 HIS A 220 ZN ZN A 301 1555 1555 2.01
LINK SG CYS A 227 ZN ZN A 301 1555 1555 2.30
LINK SG CYS B 200 ZN ZN B 301 1555 1555 2.33
LINK SG CYS B 203 ZN ZN B 301 1555 1555 2.31
LINK NE2 HIS B 220 ZN ZN B 301 1555 1555 2.01
LINK SG CYS B 227 ZN ZN B 301 1555 1555 2.31
LINK C MAA C 1 N PHE C 2 1555 1555 1.33
LINK CZ PHE C 2 O8 3V7 C 6 1555 1555 1.37
LINK CZ PHE C 5 O1 3V7 C 6 1555 1555 1.37
LINK C MAA D 1 N PHE D 2 1555 1555 1.33
LINK CZ PHE D 2 O8 3V7 D 6 1555 1555 1.37
LINK CZ PHE D 5 O1 3V7 D 6 1555 1555 1.36
CISPEP 1 GLY A -3 HIS A -2 0 -3.31
CISPEP 2 GLY B -3 HIS B -2 0 -2.50
SITE 1 AC1 4 CYS A 200 CYS A 203 HIS A 220 CYS A 227
SITE 1 AC2 4 CYS B 200 CYS B 203 HIS B 220 CYS B 227
SITE 1 AC3 18 GLN A 197 LYS A 206 LEU A 207 LYS A 208
SITE 2 AC3 18 ASN A 209 TRP A 210 GLU A 211 ASP A 214
SITE 3 AC3 18 GLU A 219 HIS A 223 PHE A 224 LEU B 167
SITE 4 AC3 18 GLN B 171 PRO B 181 HOH C 101 HOH C 102
SITE 5 AC3 18 HOH C 103 HOH C 108
SITE 1 AC4 19 LEU A 167 GLN A 171 PRO A 181 GLN B 197
SITE 2 AC4 19 LYS B 206 LEU B 207 LYS B 208 ASN B 209
SITE 3 AC4 19 TRP B 210 GLU B 211 ASP B 214 GLU B 219
SITE 4 AC4 19 HIS B 223 PHE B 224 HOH D 101 HOH D 102
SITE 5 AC4 19 HOH D 103 HOH D 104 HOH D 105
CRYST1 33.200 38.530 56.770 90.00 89.83 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.030120 0.000000 -0.000089 0.00000
SCALE2 0.000000 0.025954 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017615 0.00000