HEADER HYDROLASE 11-NOV-14 4WWL TITLE E. COLI 5'-NUCLEOTIDASE MUTANT I521C LABELED WITH MTSL (INTERMEDIATE TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN USHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-550; COMPND 5 SYNONYM: 5'-NUCLEOTIDASE; COMPND 6 EC: 3.6.1.45,3.1.3.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: USHA, B0480, JW0469; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 5NT, HYDROLASE, PHOSPHATASE, EPR LABEL EXPDTA X-RAY DIFFRACTION AUTHOR U.KRUG,K.S.PAITHANKAR,R.SCHULTZ-HEIENBROK,N.STRATER REVDAT 3 10-JAN-24 4WWL 1 LINK REVDAT 2 24-OCT-18 4WWL 1 REMARK SSBOND LINK SITE REVDAT 2 2 1 ATOM REVDAT 1 26-NOV-14 4WWL 0 JRNL AUTH U.KRUG,K.S.PAITHANKAR,R.SCHULTZ-HEIENBROK,N.STRATER JRNL TITL E. COLI 5'-NUCLEOTIDASE MUTANT I521C LABELED WITH MTSL JRNL TITL 2 (INTERMEDIATE FORM) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 36647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2898 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1520 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2810 REMARK 3 BIN R VALUE (WORKING SET) : 0.1515 REMARK 3 BIN FREE R VALUE : 0.1693 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 88 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04230 REMARK 3 B22 (A**2) : -1.04230 REMARK 3 B33 (A**2) : 2.08460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.206 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.197 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.155 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.175 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.148 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4268 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5784 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1484 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 128 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 609 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4268 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 531 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5348 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.37 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|26 - A|342} REMARK 3 ORIGIN FOR THE GROUP (A): 20.7797 0.9071 96.7091 REMARK 3 T TENSOR REMARK 3 T11: -0.0083 T22: -0.0760 REMARK 3 T33: -0.0301 T12: 0.0025 REMARK 3 T13: -0.0027 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3080 L22: 0.9081 REMARK 3 L33: 0.8414 L12: -0.1812 REMARK 3 L13: 0.2192 L23: -0.2143 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.0097 S13: -0.0069 REMARK 3 S21: -0.1459 S22: 0.0156 S23: -0.0229 REMARK 3 S31: 0.0596 S32: 0.0423 S33: -0.0557 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|343 - A|362} REMARK 3 ORIGIN FOR THE GROUP (A): 5.5155 20.4605 98.6369 REMARK 3 T TENSOR REMARK 3 T11: 0.0019 T22: 0.0078 REMARK 3 T33: 0.0009 T12: 0.0320 REMARK 3 T13: 0.0054 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.6950 L22: 1.2780 REMARK 3 L33: 0.7601 L12: -1.9748 REMARK 3 L13: -0.1608 L23: -0.6461 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0403 S13: -0.0066 REMARK 3 S21: 0.0118 S22: 0.0246 S23: 0.0672 REMARK 3 S31: -0.1191 S32: -0.0027 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|363 - A|550} REMARK 3 ORIGIN FOR THE GROUP (A): 38.9599 28.4946 101.1410 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: -0.0652 REMARK 3 T33: -0.0621 T12: 0.0140 REMARK 3 T13: 0.0084 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.5568 L22: 0.8992 REMARK 3 L33: 1.5363 L12: -0.4104 REMARK 3 L13: 0.8140 L23: -0.2715 REMARK 3 S TENSOR REMARK 3 S11: 0.1686 S12: 0.2787 S13: -0.0208 REMARK 3 S21: -0.2832 S22: -0.1131 S23: -0.1062 REMARK 3 S31: 0.0531 S32: 0.2944 S33: -0.0555 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THR 273 AND PRO 274 WERE SET TO REMARK 3 OCCUPANCIES OF 0.5 DUE TO CLASHES WITH THEIR SYMMETRY MATES. REMARK 3 ELECTRON DENSITY FOR A POTENTIAL ALTERNATIVE CONFORMATION OF THE REMARK 3 RESPECTIVE LOOP WAS MISSING. REMARK 4 REMARK 4 4WWL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 38.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1HP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 5.5, 2 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.70500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.85250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 230.55750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 153.70500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 230.55750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.85250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 964 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1072 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1108 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 551 REMARK 465 GLU A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 521 S1 MTN A 601 1.81 REMARK 500 SG CYS A 521 S1 MTN A 601 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -1.31 69.36 REMARK 500 TYR A 54 -141.82 44.30 REMARK 500 THR A 87 124.41 72.07 REMARK 500 SER A 139 117.17 -163.50 REMARK 500 GLN A 161 -127.97 59.62 REMARK 500 THR A 206 -75.15 -121.66 REMARK 500 MET A 218 -32.53 -130.67 REMARK 500 HIS A 252 -64.00 75.71 REMARK 500 ASP A 268 63.17 63.03 REMARK 500 ALA A 288 40.45 -109.22 REMARK 500 HIS A 289 -101.19 61.76 REMARK 500 PHE A 380 -39.93 -131.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MTN A 601 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD1 REMARK 620 2 HIS A 43 NE2 86.4 REMARK 620 3 ASP A 84 OD2 84.2 85.3 REMARK 620 4 GLN A 254 OE1 99.8 82.4 166.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD2 REMARK 620 2 ASN A 116 OD1 91.6 REMARK 620 3 HIS A 217 NE2 72.3 76.8 REMARK 620 4 HIS A 252 ND1 166.6 92.5 96.3 REMARK 620 5 CO3 A 613 O3 86.1 105.9 158.4 104.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 615 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HP1 RELATED DB: PDB REMARK 900 RELATED ID: 1HPU RELATED DB: PDB REMARK 900 RELATED ID: 1OI8 RELATED DB: PDB REMARK 900 RELATED ID: 1OID RELATED DB: PDB REMARK 900 RELATED ID: 2USH RELATED DB: PDB REMARK 900 RELATED ID: 1USH RELATED DB: PDB DBREF 4WWL A 26 550 UNP P07024 USHA_ECOLI 26 550 SEQADV 4WWL CYS A 521 UNP P07024 ILE 521 ENGINEERED MUTATION SEQADV 4WWL LEU A 551 UNP P07024 EXPRESSION TAG SEQADV 4WWL GLU A 552 UNP P07024 EXPRESSION TAG SEQADV 4WWL HIS A 553 UNP P07024 EXPRESSION TAG SEQADV 4WWL HIS A 554 UNP P07024 EXPRESSION TAG SEQADV 4WWL HIS A 555 UNP P07024 EXPRESSION TAG SEQADV 4WWL HIS A 556 UNP P07024 EXPRESSION TAG SEQADV 4WWL HIS A 557 UNP P07024 EXPRESSION TAG SEQADV 4WWL HIS A 558 UNP P07024 EXPRESSION TAG SEQRES 1 A 533 TYR GLU GLN ASP LYS THR TYR LYS ILE THR VAL LEU HIS SEQRES 2 A 533 THR ASN ASP HIS HIS GLY HIS PHE TRP ARG ASN GLU TYR SEQRES 3 A 533 GLY GLU TYR GLY LEU ALA ALA GLN LYS THR LEU VAL ASP SEQRES 4 A 533 GLY ILE ARG LYS GLU VAL ALA ALA GLU GLY GLY SER VAL SEQRES 5 A 533 LEU LEU LEU SER GLY GLY ASP ILE ASN THR GLY VAL PRO SEQRES 6 A 533 GLU SER ASP LEU GLN ASP ALA GLU PRO ASP PHE ARG GLY SEQRES 7 A 533 MET ASN LEU VAL GLY TYR ASP ALA MET ALA ILE GLY ASN SEQRES 8 A 533 HIS GLU PHE ASP ASN PRO LEU THR VAL LEU ARG GLN GLN SEQRES 9 A 533 GLU LYS TRP ALA LYS PHE PRO LEU LEU SER ALA ASN ILE SEQRES 10 A 533 TYR GLN LYS SER THR GLY GLU ARG LEU PHE LYS PRO TRP SEQRES 11 A 533 ALA LEU PHE LYS ARG GLN ASP LEU LYS ILE ALA VAL ILE SEQRES 12 A 533 GLY LEU THR THR ASP ASP THR ALA LYS ILE GLY ASN PRO SEQRES 13 A 533 GLU TYR PHE THR ASP ILE GLU PHE ARG LYS PRO ALA ASP SEQRES 14 A 533 GLU ALA LYS LEU VAL ILE GLN GLU LEU GLN GLN THR GLU SEQRES 15 A 533 LYS PRO ASP ILE ILE ILE ALA ALA THR HIS MET GLY HIS SEQRES 16 A 533 TYR ASP ASN GLY GLU HIS GLY SER ASN ALA PRO GLY ASP SEQRES 17 A 533 VAL GLU MET ALA ARG ALA LEU PRO ALA GLY SER LEU ALA SEQRES 18 A 533 MET ILE VAL GLY GLY HIS SER GLN ASP PRO VAL CYS MET SEQRES 19 A 533 ALA ALA GLU ASN LYS LYS GLN VAL ASP TYR VAL PRO GLY SEQRES 20 A 533 THR PRO CYS LYS PRO ASP GLN GLN ASN GLY ILE TRP ILE SEQRES 21 A 533 VAL GLN ALA HIS GLU TRP GLY LYS TYR VAL GLY ARG ALA SEQRES 22 A 533 ASP PHE GLU PHE ARG ASN GLY GLU MET LYS MET VAL ASN SEQRES 23 A 533 TYR GLN LEU ILE PRO VAL ASN LEU LYS LYS LYS VAL THR SEQRES 24 A 533 TRP GLU ASP GLY LYS SER GLU ARG VAL LEU TYR THR PRO SEQRES 25 A 533 GLU ILE ALA GLU ASN GLN GLN MET ILE SER LEU LEU SER SEQRES 26 A 533 PRO PHE GLN ASN LYS GLY LYS ALA GLN LEU GLU VAL LYS SEQRES 27 A 533 ILE GLY GLU THR ASN GLY ARG LEU GLU GLY ASP ARG ASP SEQRES 28 A 533 LYS VAL ARG PHE VAL GLN THR ASN MET GLY ARG LEU ILE SEQRES 29 A 533 LEU ALA ALA GLN MET ASP ARG THR GLY ALA ASP PHE ALA SEQRES 30 A 533 VAL MET SER GLY GLY GLY ILE ARG ASP SER ILE GLU ALA SEQRES 31 A 533 GLY ASP ILE SER TYR LYS ASN VAL LEU LYS VAL GLN PRO SEQRES 32 A 533 PHE GLY ASN VAL VAL VAL TYR ALA ASP MET THR GLY LYS SEQRES 33 A 533 GLU VAL ILE ASP TYR LEU THR ALA VAL ALA GLN MET LYS SEQRES 34 A 533 PRO ASP SER GLY ALA TYR PRO GLN PHE ALA ASN VAL SER SEQRES 35 A 533 PHE VAL ALA LYS ASP GLY LYS LEU ASN ASP LEU LYS ILE SEQRES 36 A 533 LYS GLY GLU PRO VAL ASP PRO ALA LYS THR TYR ARG MET SEQRES 37 A 533 ALA THR LEU ASN PHE ASN ALA THR GLY GLY ASP GLY TYR SEQRES 38 A 533 PRO ARG LEU ASP ASN LYS PRO GLY TYR VAL ASN THR GLY SEQRES 39 A 533 PHE CYS ASP ALA GLU VAL LEU LYS ALA TYR ILE GLN LYS SEQRES 40 A 533 SER SER PRO LEU ASP VAL SER VAL TYR GLU PRO LYS GLY SEQRES 41 A 533 GLU VAL SER TRP GLN LEU GLU HIS HIS HIS HIS HIS HIS HET MTN A 601 12 HET ZN A 602 1 HET ZN A 603 1 HET SO4 A 604 5 HET SO4 A 605 10 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET SO4 A 612 5 HET CO3 A 613 4 HET CO3 A 614 4 HET GOL A 615 6 HETNAM MTN S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5-DIHYDRO-1H-PYRROL-3- HETNAM 2 MTN YL)METHYL] METHANESULFONOTHIOATE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CO3 CARBONATE ION HETNAM GOL GLYCEROL HETSYN MTN MTSL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MTN C10 H18 N O3 S2 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 CO3 2(C O3 2-) FORMUL 16 GOL C3 H8 O3 FORMUL 17 HOH *427(H2 O) HELIX 1 AA1 GLY A 55 GLY A 74 1 20 HELIX 2 AA2 VAL A 89 LEU A 94 1 6 HELIX 3 AA3 ALA A 97 GLY A 108 1 12 HELIX 4 AA4 GLY A 115 ASP A 120 5 6 HELIX 5 AA5 PRO A 122 ALA A 133 1 12 HELIX 6 AA6 ASP A 174 GLY A 179 1 6 HELIX 7 AA7 ASN A 180 THR A 185 5 6 HELIX 8 AA8 LYS A 191 THR A 206 1 16 HELIX 9 AA9 TYR A 221 GLU A 225 5 5 HELIX 10 AB1 GLY A 232 LEU A 240 1 9 HELIX 11 AB2 ASN A 342 GLU A 361 1 20 HELIX 12 AB3 ASP A 374 ARG A 379 1 6 HELIX 13 AB4 THR A 383 GLY A 398 1 16 HELIX 14 AB5 GLY A 407 ILE A 409 5 3 HELIX 15 AB6 TYR A 420 GLN A 427 1 8 HELIX 16 AB7 GLY A 440 ALA A 451 1 12 HELIX 17 AB8 ASN A 497 THR A 501 1 5 HELIX 18 AB9 GLY A 502 TYR A 506 5 5 HELIX 19 AC1 ASP A 522 SER A 534 1 13 HELIX 20 AC2 ASP A 537 GLU A 542 5 6 SHEET 1 AA1 6 LEU A 137 LEU A 138 0 SHEET 2 AA1 6 ALA A 111 ALA A 113 1 N MET A 112 O LEU A 138 SHEET 3 AA1 6 SER A 76 SER A 81 1 N SER A 81 O ALA A 113 SHEET 4 AA1 6 TYR A 32 THR A 39 1 N LEU A 37 O LEU A 78 SHEET 5 AA1 6 TYR A 294 ARG A 303 -1 O PHE A 300 N ILE A 34 SHEET 6 AA1 6 GLU A 306 PRO A 316 -1 O GLN A 313 N ARG A 297 SHEET 1 AA2 3 GLU A 149 ARG A 150 0 SHEET 2 AA2 3 ILE A 142 GLN A 144 -1 N GLN A 144 O GLU A 149 SHEET 3 AA2 3 ILE A 187 PHE A 189 -1 O GLU A 188 N TYR A 143 SHEET 1 AA3 6 TRP A 155 ARG A 160 0 SHEET 2 AA3 6 LEU A 163 THR A 171 -1 O ILE A 165 N PHE A 158 SHEET 3 AA3 6 ILE A 211 HIS A 217 1 O ALA A 215 N ILE A 168 SHEET 4 AA3 6 MET A 247 VAL A 249 1 O VAL A 249 N ALA A 214 SHEET 5 AA3 6 ILE A 283 VAL A 286 1 O TRP A 284 N ILE A 248 SHEET 6 AA3 6 ASP A 278 GLN A 280 -1 N ASP A 278 O ILE A 285 SHEET 1 AA4 2 MET A 259 ALA A 261 0 SHEET 2 AA4 2 LYS A 264 LYS A 265 -1 O LYS A 264 N ALA A 260 SHEET 1 AA5 2 LYS A 320 THR A 324 0 SHEET 2 AA5 2 SER A 330 LEU A 334 -1 O GLU A 331 N VAL A 323 SHEET 1 AA6 2 LYS A 363 THR A 367 0 SHEET 2 AA6 2 GLY A 416 SER A 419 -1 O ILE A 418 N ILE A 364 SHEET 1 AA7 5 PRO A 461 ALA A 464 0 SHEET 2 AA7 5 PHE A 401 SER A 405 -1 N MET A 404 O GLN A 462 SHEET 3 AA7 5 THR A 490 LEU A 496 1 O ALA A 494 N PHE A 401 SHEET 4 AA7 5 VAL A 432 THR A 439 -1 N MET A 438 O TYR A 491 SHEET 5 AA7 5 TYR A 515 CYS A 521 -1 O VAL A 516 N TYR A 435 SHEET 1 AA8 4 GLU A 483 PRO A 484 0 SHEET 2 AA8 4 LYS A 474 ILE A 480 -1 N ILE A 480 O GLU A 483 SHEET 3 AA8 4 VAL A 466 LYS A 471 -1 N LYS A 471 O LYS A 474 SHEET 4 AA8 4 VAL A 547 TRP A 549 1 O SER A 548 N ALA A 470 SSBOND 1 CYS A 258 CYS A 275 1555 1555 2.04 LINK OD1 ASP A 41 ZN ZN A 603 1555 1555 2.33 LINK NE2 HIS A 43 ZN ZN A 603 1555 1555 2.58 LINK OD2 ASP A 84 ZN ZN A 602 1555 1555 2.57 LINK OD2 ASP A 84 ZN ZN A 603 1555 1555 2.47 LINK OD1 ASN A 116 ZN ZN A 602 1555 1555 2.20 LINK NE2 HIS A 217 ZN ZN A 602 1555 1555 2.25 LINK ND1 HIS A 252 ZN ZN A 602 1555 1555 2.07 LINK OE1 GLN A 254 ZN ZN A 603 1555 1555 2.63 LINK ZN ZN A 602 O3 CO3 A 613 1555 1555 2.49 CISPEP 1 SER A 534 PRO A 535 0 -0.70 SITE 1 AC1 8 ASP A 93 ASP A 120 ASN A 121 TYR A 420 SITE 2 AC1 8 CYS A 521 GLU A 524 HOH A 779 HOH A 723 SITE 1 AC2 6 ASP A 84 ASN A 116 HIS A 217 HIS A 252 SITE 2 AC2 6 ZN A 603 CO3 A 613 SITE 1 AC3 7 ASP A 41 HIS A 43 ASP A 84 HIS A 252 SITE 2 AC3 7 GLN A 254 ZN A 602 CO3 A 613 SITE 1 AC4 4 SER A 76 ARG A 160 GLN A 161 HOH A1007 SITE 1 AC5 7 ASP A 110 LEU A 157 PHE A 158 LYS A 159 SITE 2 AC5 7 ARG A 160 HOH A 735 HOH A 832 SITE 1 AC6 5 ARG A 102 ASN A 105 LYS A 134 HOH A 985 SITE 2 AC6 5 HOH A 864 SITE 1 AC7 3 ARG A 102 LYS A 131 HOH A 918 SITE 1 AC8 3 TRP A 47 ARG A 48 HOH A 820 SITE 1 AC9 4 LYS A 421 ASN A 422 HOH A1016 HOH A 776 SITE 1 AD1 4 LEU A 475 ASN A 476 ASP A 477 HOH A 885 SITE 1 AD2 8 LYS A 33 GLU A 69 GLU A 73 ARG A 297 SITE 2 AD2 8 LEU A 334 TYR A 335 THR A 336 HOH A 796 SITE 1 AD3 3 ARG A 375 ARG A 379 ARG A 410 SITE 1 AD4 6 ASP A 84 ASN A 116 HIS A 117 HIS A 252 SITE 2 AD4 6 ZN A 602 ZN A 603 SITE 1 AD5 3 SER A 457 GLY A 458 HOH A 775 SITE 1 AD6 6 ASN A 105 GLY A 108 TYR A 109 LYS A 134 SITE 2 AD6 6 PHE A 135 HOH A 735 CRYST1 68.890 68.890 307.410 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003253 0.00000