HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-NOV-14 4WY2 TITLE CRYSTAL STRUCTURE OF UNIVERSAL STRESS PROTEIN E FROM PROTEUS MIRABILIS TITLE 2 IN COMPLEX WITH UDP-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-N-ACETYL-ALPHA- TITLE 3 GLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNIVERSAL STRESS PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 529507; SOURCE 4 STRAIN: HI4320; SOURCE 5 GENE: USPE, PMI1202; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MCSG, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,I.G.SHABALIN,K.B.HANDING,A.JOACHIMIAK,W.MINOR,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-SEP-23 4WY2 1 REMARK REVDAT 4 13-APR-22 4WY2 1 AUTHOR JRNL HETSYN REVDAT 3 20-SEP-17 4WY2 1 SOURCE REMARK REVDAT 2 14-JAN-15 4WY2 1 JRNL REVDAT 1 26-NOV-14 4WY2 0 JRNL AUTH I.A.SHUMILIN,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF UNIVERSAL STRESS PROTEIN E FROM PROTEUS JRNL TITL 2 MIRABILIS INCOMPLEX JRNL TITL 3 WITHUDP-3-O-[(3R) JRNL TITL 4 -3-HYDROXYTETRADECANOYL]-N-ACETYL-ALPHA-GLUCOSAMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 39066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.761 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2593 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2518 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3534 ; 1.453 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5804 ; 0.776 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 5.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;34.567 ;25.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;13.234 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2857 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1236 ; 1.165 ; 1.674 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1235 ; 1.166 ; 1.672 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1543 ; 1.792 ; 2.502 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8600 -33.9880 12.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1911 REMARK 3 T33: 0.0190 T12: 0.0558 REMARK 3 T13: -0.0339 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.8876 L22: 1.9981 REMARK 3 L33: 1.6889 L12: -0.7193 REMARK 3 L13: -0.4351 L23: 1.5242 REMARK 3 S TENSOR REMARK 3 S11: -0.1146 S12: -0.2275 S13: 0.0863 REMARK 3 S21: 0.2490 S22: 0.2034 S23: -0.1679 REMARK 3 S31: 0.1129 S32: -0.0374 S33: -0.0889 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8910 -36.7800 14.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.1979 REMARK 3 T33: 0.0745 T12: 0.0719 REMARK 3 T13: -0.0735 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 1.5848 L22: 4.0434 REMARK 3 L33: 4.4111 L12: -1.4680 REMARK 3 L13: -0.6275 L23: 3.3399 REMARK 3 S TENSOR REMARK 3 S11: -0.1574 S12: -0.3963 S13: 0.1565 REMARK 3 S21: 0.3615 S22: 0.3858 S23: -0.4651 REMARK 3 S31: 0.0754 S32: 0.1076 S33: -0.2284 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1360 -33.6420 11.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.1949 REMARK 3 T33: 0.0146 T12: 0.0522 REMARK 3 T13: -0.0119 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.5284 L22: 2.6360 REMARK 3 L33: 0.6581 L12: -0.9089 REMARK 3 L13: -0.8138 L23: 1.1886 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: -0.1349 S13: -0.0631 REMARK 3 S21: 0.1940 S22: 0.0277 S23: 0.1604 REMARK 3 S31: 0.0940 S32: -0.0561 S33: 0.0803 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1500 -19.1040 5.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.1673 REMARK 3 T33: 0.0797 T12: 0.0986 REMARK 3 T13: -0.0106 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 6.9850 L22: 10.1319 REMARK 3 L33: 3.1003 L12: 0.6453 REMARK 3 L13: -2.0494 L23: -0.5570 REMARK 3 S TENSOR REMARK 3 S11: 0.2863 S12: 0.0605 S13: 0.5828 REMARK 3 S21: -0.3829 S22: -0.1832 S23: -0.3280 REMARK 3 S31: -0.3093 S32: 0.1445 S33: -0.1031 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2570 -13.5370 19.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.1527 T22: 0.2025 REMARK 3 T33: 0.0370 T12: 0.0481 REMARK 3 T13: -0.0255 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 1.8511 L22: 1.5132 REMARK 3 L33: 0.2371 L12: -1.1842 REMARK 3 L13: 0.2145 L23: -0.2005 REMARK 3 S TENSOR REMARK 3 S11: -0.1513 S12: -0.2768 S13: 0.0498 REMARK 3 S21: 0.2090 S22: 0.2222 S23: -0.0841 REMARK 3 S31: 0.0213 S32: 0.0816 S33: -0.0708 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -44.2010 -1.9380 15.5430 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1282 REMARK 3 T33: 0.0758 T12: -0.0114 REMARK 3 T13: 0.0311 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.2781 L22: 2.1210 REMARK 3 L33: 6.0095 L12: -2.0675 REMARK 3 L13: 3.3095 L23: -2.2308 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.1505 S13: 0.0454 REMARK 3 S21: 0.0659 S22: 0.1075 S23: -0.0087 REMARK 3 S31: 0.0462 S32: -0.0350 S33: -0.0615 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): -27.1330 -6.6230 17.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.1322 REMARK 3 T33: 0.0625 T12: 0.0297 REMARK 3 T13: -0.0310 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 3.4289 L22: 2.0421 REMARK 3 L33: 0.8116 L12: -1.0897 REMARK 3 L13: 0.1459 L23: 0.2204 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: -0.0521 S13: 0.3486 REMARK 3 S21: 0.1079 S22: 0.1099 S23: -0.2352 REMARK 3 S31: -0.0416 S32: 0.1090 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): -37.8500 -20.0350 6.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.8145 T22: 0.9390 REMARK 3 T33: 0.4622 T12: 0.0632 REMARK 3 T13: 0.0887 T23: 0.3136 REMARK 3 L TENSOR REMARK 3 L11: 46.6028 L22: 81.6922 REMARK 3 L33: 2.3176 L12: 46.2779 REMARK 3 L13: 2.0583 L23: -6.8661 REMARK 3 S TENSOR REMARK 3 S11: -1.6872 S12: -1.3285 S13: -1.4607 REMARK 3 S21: 1.5639 S22: 2.4574 S23: 1.2848 REMARK 3 S31: -0.8477 S32: -1.0186 S33: -0.7702 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3600 -21.2130 10.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.1582 REMARK 3 T33: 0.0921 T12: 0.0562 REMARK 3 T13: -0.0208 T23: -0.0884 REMARK 3 L TENSOR REMARK 3 L11: 3.1365 L22: 1.7847 REMARK 3 L33: 1.6983 L12: 0.0775 REMARK 3 L13: 0.5524 L23: 0.6738 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.2070 S13: -0.4216 REMARK 3 S21: 0.0833 S22: -0.0451 S23: 0.1369 REMARK 3 S31: 0.0015 S32: -0.1340 S33: 0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4WY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: 3OLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 12 MG/ML PROTEIN IN 10MM REMARK 280 HEPES, 500MM NACL PH 7.5 WERE MIXED WITH 0.2 UL OF THE QUIAGEN REMARK 280 CRYOS SUITE CONDITION #50 (1.36 M AMMONIUM SULFATE, 0.085 M MES REMARK 280 PH 6.5, 8.5% DIOXANE, 15% GLYCEROL) AND EQUILIBRATED AGAINST THE REMARK 280 MOTHER LIQUOR IN 96 WELL 2 DROP CRYSTALLIZATION PLATE (MRC), REMARK 280 VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.46150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.93850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.93850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.19225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.93850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.93850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.73075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.93850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.93850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.19225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.93850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.93850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.73075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.46150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LEU A 277 REMARK 465 SER A 278 REMARK 465 ASP A 312 REMARK 465 SER A 313 REMARK 465 ASP A 314 REMARK 465 ASN A 315 REMARK 465 GLU A 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 3 CE NZ REMARK 470 GLN A 74 CD OE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 GLU A 178 CD OE1 OE2 REMARK 470 LYS A 189 CE NZ REMARK 470 THR A 275 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 147 49.11 -82.67 REMARK 500 ARG A 274 128.18 -30.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U20 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OLQ RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC67700 RELATED DB: TARGETTRACK DBREF 4WY2 A 1 316 UNP B4ETT2 B4ETT2_PROMH 1 316 SEQADV 4WY2 SER A -2 UNP B4ETT2 EXPRESSION TAG SEQADV 4WY2 ASN A -1 UNP B4ETT2 EXPRESSION TAG SEQADV 4WY2 ALA A 0 UNP B4ETT2 EXPRESSION TAG SEQRES 1 A 319 SER ASN ALA MET GLU LYS TYR GLN ASN LEU LEU VAL VAL SEQRES 2 A 319 ILE ASP PRO ASN GLN ASP ASP GLN PRO ALA LEU ARG ARG SEQRES 3 A 319 ALA VAL TYR ILE VAL GLN ARG ASN GLY GLY ARG ILE LYS SEQRES 4 A 319 ALA PHE LEU PRO VAL TYR ASP LEU SER TYR ASP MET THR SEQRES 5 A 319 THR LEU LEU SER PRO ASP GLU ARG ASN ALA MET ARG LYS SEQRES 6 A 319 GLY VAL ILE ASN GLN LYS THR ALA TRP ILE LYS GLN GLN SEQRES 7 A 319 ALA ARG TYR TYR LEU GLU ALA GLY ILE GLN ILE ASP ILE SEQRES 8 A 319 LYS VAL ILE TRP HIS ASN ARG PRO TYR GLU ALA ILE ILE SEQRES 9 A 319 GLU GLU VAL ILE THR ASP LYS HIS ASP LEU LEU ILE LYS SEQRES 10 A 319 MET ALA HIS GLN HIS ASP LYS LEU GLY SER LEU ILE PHE SEQRES 11 A 319 THR PRO LEU ASP TRP GLN LEU LEU ARG LYS CYS PRO ALA SEQRES 12 A 319 PRO VAL TRP MET VAL LYS ASP LYS GLU TRP PRO GLU TYR SEQRES 13 A 319 GLY THR ILE VAL VAL ALA ALA ASN LEU SER ASN GLU GLU SEQRES 14 A 319 SER TYR HIS ASP ALA LEU ASN LEU LYS LEU ILE GLU LEU SEQRES 15 A 319 THR ASN ASP LEU SER HIS ARG ILE GLN LYS ASP PRO ASP SEQRES 16 A 319 VAL HIS LEU LEU SER ALA TYR PRO VAL ALA PRO ILE ASN SEQRES 17 A 319 ILE ALA ILE GLU LEU PRO ASP PHE ASP PRO ASN LEU TYR SEQRES 18 A 319 ASN ASN ALA LEU ARG GLY GLN HIS LEU ILE ALA MET LYS SEQRES 19 A 319 GLU LEU ARG GLN LYS PHE SER ILE PRO GLU GLU LYS THR SEQRES 20 A 319 HIS VAL LYS GLU GLY LEU PRO GLU GLN VAL ILE PRO GLN SEQRES 21 A 319 VAL CYS GLU GLU LEU ASN ALA GLY ILE VAL VAL LEU GLY SEQRES 22 A 319 ILE LEU GLY ARG THR GLY LEU SER ALA ALA PHE LEU GLY SEQRES 23 A 319 ASN THR ALA GLU GLN LEU ILE ASP HIS ILE LYS CYS ASP SEQRES 24 A 319 LEU LEU ALA ILE LYS PRO ASP GLY PHE THR CYS PRO ILE SEQRES 25 A 319 THR VAL ASP SER ASP ASN GLU HET U20 A 401 55 HET GOL A 402 6 HET CL A 403 1 HET GOL A 404 6 HET SO4 A 405 5 HETNAM U20 URIDINE-5'-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-N- HETNAM 2 U20 ACETYL-D-GLUCOSAMINE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN U20 (2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-2-{[(R)-{[(S)-{[(2R, HETSYN 2 U20 3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)- HETSYN 3 U20 3,4-DIHYDROX YTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY) HETSYN 4 U20 PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6- HETSYN 5 U20 (HYDROXYMETHYL)TETRAHYDRO-2H- PYRAN-4-YL (3R)-3- HETSYN 6 U20 HYDROXYTETRADECANOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 U20 C31 H53 N3 O19 P2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CL CL 1- FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *318(H2 O) HELIX 1 AA1 GLN A 18 GLY A 32 1 15 HELIX 2 AA2 ASP A 43 MET A 48 5 6 HELIX 3 AA3 SER A 53 ALA A 82 1 30 HELIX 4 AA4 ARG A 95 LYS A 108 1 14 HELIX 5 AA5 THR A 128 CYS A 138 1 11 HELIX 6 AA6 GLU A 166 GLN A 188 1 23 HELIX 7 AA7 ASP A 214 PHE A 237 1 24 HELIX 8 AA8 PRO A 240 GLU A 242 5 3 HELIX 9 AA9 LEU A 250 LEU A 262 1 13 HELIX 10 AB1 ALA A 280 ASP A 291 1 12 SHEET 1 AA1 5 ILE A 86 TRP A 92 0 SHEET 2 AA1 5 ARG A 34 VAL A 41 1 N ALA A 37 O LYS A 89 SHEET 3 AA1 5 ASN A 6 VAL A 10 1 N VAL A 9 O LYS A 36 SHEET 4 AA1 5 LEU A 111 GLN A 118 1 O ILE A 113 N LEU A 8 SHEET 5 AA1 5 LEU A 125 ILE A 126 -1 O ILE A 126 N HIS A 117 SHEET 1 AA210 ILE A 86 TRP A 92 0 SHEET 2 AA210 ARG A 34 VAL A 41 1 N ALA A 37 O LYS A 89 SHEET 3 AA210 ASN A 6 VAL A 10 1 N VAL A 9 O LYS A 36 SHEET 4 AA210 LEU A 111 GLN A 118 1 O ILE A 113 N LEU A 8 SHEET 5 AA210 VAL A 142 LYS A 146 1 O TRP A 143 N LEU A 112 SHEET 6 AA210 ASP A 296 ILE A 300 -1 O LEU A 297 N MET A 144 SHEET 7 AA210 ALA A 264 GLY A 270 1 N VAL A 267 O LEU A 298 SHEET 8 AA210 THR A 155 ALA A 159 1 N VAL A 157 O VAL A 268 SHEET 9 AA210 VAL A 193 TYR A 199 1 O HIS A 194 N ILE A 156 SHEET 10 AA210 THR A 244 GLU A 248 1 O HIS A 245 N SER A 197 SITE 1 AC1 15 ASP A 17 GLN A 18 ARG A 22 TYR A 26 SITE 2 AC1 15 GLN A 75 TYR A 78 TYR A 79 TRP A 150 SITE 3 AC1 15 HOH A 619 HOH A 670 HOH A 674 HOH A 705 SITE 4 AC1 15 HOH A 745 HOH A 773 HOH A 813 SITE 1 AC2 10 THR A 50 LEU A 51 ALA A 59 LYS A 62 SITE 2 AC2 10 ILE A 206 ALA A 207 ILE A 208 HOH A 510 SITE 3 AC2 10 HOH A 519 HOH A 544 SITE 1 AC3 1 LYS A 189 SITE 1 AC4 6 PRO A 251 ILE A 255 LEU A 269 HOH A 604 SITE 2 AC4 6 HOH A 629 HOH A 801 SITE 1 AC5 4 HIS A 245 LYS A 247 HOH A 764 HOH A 806 CRYST1 107.877 107.877 74.923 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013347 0.00000