HEADER HYDROLASE 18-NOV-14 4WYZ TITLE THE CRYSTAL STRUCTURE OF THE A109G MUTANT OF RNASE A IN COMPLEX WITH TITLE 2 3'UMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 27-150; COMPND 5 SYNONYM: RNASE 1,RNASE A; COMPND 6 EC: 3.1.27.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: RNASE1, RNS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS CONFORMATIONAL DYNAMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.L.FRENCH,D.GAGNE,N.DOUCET,M.SIMONOVIC REVDAT 6 25-DEC-19 4WYZ 1 REMARK REVDAT 5 20-SEP-17 4WYZ 1 REMARK REVDAT 4 01-JUN-16 4WYZ 1 REMARK REVDAT 3 30-DEC-15 4WYZ 1 JRNL REVDAT 2 25-NOV-15 4WYZ 1 JRNL REVDAT 1 18-NOV-15 4WYZ 0 JRNL AUTH D.GAGNE,R.L.FRENCH,C.NARAYANAN,M.SIMONOVIC,P.K.AGARWAL, JRNL AUTH 2 N.DOUCET JRNL TITL PERTURBATION OF THE CONFORMATIONAL DYNAMICS OF AN JRNL TITL 2 ACTIVE-SITE LOOP ALTERS ENZYME ACTIVITY. JRNL REF STRUCTURE V. 23 2256 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26655472 JRNL DOI 10.1016/J.STR.2015.10.011 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 39580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7824 - 3.4913 1.00 3023 159 0.1264 0.1698 REMARK 3 2 3.4913 - 2.7717 1.00 2851 182 0.1118 0.1311 REMARK 3 3 2.7717 - 2.4215 1.00 2847 153 0.1105 0.1523 REMARK 3 4 2.4215 - 2.2002 1.00 2839 147 0.1084 0.1413 REMARK 3 5 2.2002 - 2.0425 1.00 2816 140 0.1069 0.1391 REMARK 3 6 2.0425 - 1.9221 1.00 2812 145 0.1159 0.1665 REMARK 3 7 1.9221 - 1.8259 1.00 2805 153 0.1256 0.2093 REMARK 3 8 1.8259 - 1.7464 1.00 2807 139 0.1281 0.1799 REMARK 3 9 1.7464 - 1.6792 1.00 2789 140 0.1339 0.2023 REMARK 3 10 1.6792 - 1.6212 1.00 2811 127 0.1409 0.2063 REMARK 3 11 1.6212 - 1.5705 0.98 2725 156 0.1548 0.2272 REMARK 3 12 1.5705 - 1.5256 0.90 2503 134 0.1779 0.2243 REMARK 3 13 1.5256 - 1.4855 0.80 2227 124 0.2063 0.2386 REMARK 3 14 1.4855 - 1.4490 0.71 1971 108 0.2339 0.3106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2057 REMARK 3 ANGLE : 1.445 2799 REMARK 3 CHIRALITY : 0.108 314 REMARK 3 PLANARITY : 0.006 367 REMARK 3 DIHEDRAL : 12.632 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.449 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52821.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIB BUFFER, PEG 1500, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.24350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.92050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.24350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.92050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 39 NE CZ NH1 NH2 REMARK 470 LYS A 66 CE NZ REMARK 470 LYS A 98 CE NZ REMARK 470 LYS B 1 CG CD CE NZ REMARK 470 LYS B 31 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 1 O HOH B 501 1.94 REMARK 500 O HOH B 736 O HOH B 759 1.95 REMARK 500 O HOH A 541 O HOH A 686 1.97 REMARK 500 O HOH B 708 O HOH B 759 1.97 REMARK 500 O HOH A 527 O HOH A 711 1.97 REMARK 500 O HOH B 561 O HOH B 777 1.98 REMARK 500 O HOH A 604 O HOH A 626 1.98 REMARK 500 O HOH A 629 O HOH A 691 1.99 REMARK 500 O HOH A 588 O HOH A 706 2.01 REMARK 500 O HOH A 646 O HOH A 689 2.03 REMARK 500 O HOH A 607 O HOH A 612 2.03 REMARK 500 O HOH A 524 O HOH A 729 2.04 REMARK 500 O HOH B 617 O HOH B 711 2.05 REMARK 500 O HOH B 592 O HOH B 693 2.06 REMARK 500 O HOH B 673 O HOH B 796 2.06 REMARK 500 O HOH B 531 O HOH B 708 2.06 REMARK 500 O HOH B 585 O HOH B 715 2.08 REMARK 500 O HOH B 517 O HOH B 563 2.09 REMARK 500 O HOH B 776 O HOH B 777 2.10 REMARK 500 O HOH A 611 O HOH A 640 2.10 REMARK 500 NZ LYS B 104 O HOH B 502 2.11 REMARK 500 O HOH B 576 O HOH B 720 2.11 REMARK 500 O HOH B 507 O HOH B 703 2.11 REMARK 500 O HOH A 570 O HOH B 723 2.12 REMARK 500 O HOH A 589 O HOH A 713 2.13 REMARK 500 O HOH A 589 O HOH A 684 2.13 REMARK 500 O HOH B 528 O HOH B 621 2.13 REMARK 500 O HOH B 612 O HOH B 701 2.14 REMARK 500 O HOH A 518 O HOH A 656 2.14 REMARK 500 O HOH A 682 O HOH A 692 2.14 REMARK 500 O HOH B 519 O HOH B 697 2.14 REMARK 500 O HOH A 637 O HOH A 670 2.14 REMARK 500 O HOH B 561 O HOH B 714 2.14 REMARK 500 O HOH A 587 O HOH A 598 2.14 REMARK 500 O HOH B 654 O HOH B 689 2.14 REMARK 500 OD1 ASN A 62 O HOH A 501 2.14 REMARK 500 O HOH A 603 O HOH A 731 2.15 REMARK 500 O HOH A 758 O HOH A 765 2.15 REMARK 500 O HOH A 597 O HOH A 757 2.15 REMARK 500 O HOH B 515 O HOH B 749 2.15 REMARK 500 O3P U3P A 401 O HOH A 502 2.15 REMARK 500 O HOH A 709 O HOH A 723 2.15 REMARK 500 O HOH B 611 O HOH B 673 2.15 REMARK 500 O HOH B 530 O HOH B 770 2.15 REMARK 500 O HOH A 647 O HOH B 595 2.15 REMARK 500 O HOH B 728 O HOH B 760 2.15 REMARK 500 O HOH A 652 O HOH A 768 2.16 REMARK 500 NH2 ARG B 39 O HOH B 503 2.16 REMARK 500 OH TYR B 73 O HOH B 504 2.16 REMARK 500 O HOH A 517 O HOH A 728 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 76 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 759 O HOH B 777 3545 1.99 REMARK 500 O HOH A 657 O HOH A 686 3544 2.00 REMARK 500 O HOH A 626 O HOH A 646 3554 2.02 REMARK 500 O HOH A 544 O HOH A 604 3544 2.03 REMARK 500 O HOH B 529 O HOH B 536 4545 2.06 REMARK 500 O HOH B 693 O HOH B 769 4445 2.09 REMARK 500 O HOH B 506 O HOH B 646 3545 2.09 REMARK 500 O HOH B 542 O HOH B 595 3555 2.10 REMARK 500 O HOH A 720 O HOH B 642 1554 2.10 REMARK 500 O HOH A 509 O HOH A 596 2545 2.10 REMARK 500 O HOH A 618 O HOH B 575 3544 2.10 REMARK 500 O HOH B 523 O HOH B 719 3545 2.11 REMARK 500 O HOH B 747 O HOH B 790 3545 2.13 REMARK 500 O HOH A 511 O HOH A 702 2545 2.14 REMARK 500 O HOH B 708 O HOH B 730 3545 2.14 REMARK 500 O HOH B 560 O HOH B 701 4545 2.15 REMARK 500 O HOH A 526 O HOH A 582 2545 2.18 REMARK 500 O HOH A 511 O HOH A 640 3544 2.18 REMARK 500 O HOH A 521 O HOH A 678 2545 2.18 REMARK 500 O HOH A 563 O HOH A 578 3554 2.19 REMARK 500 O HOH A 726 O HOH A 733 3554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 1 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 GLU B 2 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 60 -129.80 -108.42 REMARK 500 HIS B 48 66.29 -101.51 REMARK 500 GLN B 60 -133.41 -104.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 1 GLU B 2 149.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U3P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U3P B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WYN RELATED DB: PDB REMARK 900 APO ENZYME REMARK 900 RELATED ID: 4WYP RELATED DB: PDB REMARK 900 ENZYME IN COMPLEX WITH 5'AMP DBREF 4WYZ A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 4WYZ B 1 124 UNP P61823 RNAS1_BOVIN 27 150 SEQADV 4WYZ MET A 0 UNP P61823 INITIATING METHIONINE SEQADV 4WYZ GLY A 109 UNP P61823 ALA 135 ENGINEERED MUTATION SEQADV 4WYZ MET B 0 UNP P61823 INITIATING METHIONINE SEQADV 4WYZ GLY B 109 UNP P61823 ALA 135 ENGINEERED MUTATION SEQRES 1 A 125 MET LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS SEQRES 2 A 125 MET ASP SER SER THR SER ALA ALA SER SER SER ASN TYR SEQRES 3 A 125 CYS ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP SEQRES 4 A 125 ARG CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU SEQRES 5 A 125 ALA ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA SEQRES 6 A 125 CYS LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER SEQRES 7 A 125 THR MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER SEQRES 8 A 125 LYS TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN SEQRES 9 A 125 LYS HIS ILE ILE VAL GLY CYS GLU GLY ASN PRO TYR VAL SEQRES 10 A 125 PRO VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 125 MET LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS SEQRES 2 B 125 MET ASP SER SER THR SER ALA ALA SER SER SER ASN TYR SEQRES 3 B 125 CYS ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP SEQRES 4 B 125 ARG CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU SEQRES 5 B 125 ALA ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA SEQRES 6 B 125 CYS LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER SEQRES 7 B 125 THR MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER SEQRES 8 B 125 LYS TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN SEQRES 9 B 125 LYS HIS ILE ILE VAL GLY CYS GLU GLY ASN PRO TYR VAL SEQRES 10 B 125 PRO VAL HIS PHE ASP ALA SER VAL HET U3P A 401 32 HET U3P B 401 32 HETNAM U3P 3'-URIDINEMONOPHOSPHATE FORMUL 3 U3P 2(C9 H13 N2 O9 P) FORMUL 5 HOH *579(H2 O) HELIX 1 AA1 THR A 3 MET A 13 1 11 HELIX 2 AA2 ASN A 24 ARG A 33 1 10 HELIX 3 AA3 SER A 50 ALA A 56 1 7 HELIX 4 AA4 VAL A 57 GLN A 60 5 4 HELIX 5 AA5 THR B 3 MET B 13 1 11 HELIX 6 AA6 ASN B 24 ARG B 33 1 10 HELIX 7 AA7 SER B 50 ALA B 56 1 7 HELIX 8 AA8 VAL B 57 GLN B 60 5 4 SHEET 1 AA1 3 VAL A 43 VAL A 47 0 SHEET 2 AA1 3 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 AA1 3 TYR A 97 LYS A 104 -1 O LYS A 104 N MET A 79 SHEET 1 AA2 4 LYS A 61 VAL A 63 0 SHEET 2 AA2 4 CYS A 72 GLN A 74 -1 O GLN A 74 N LYS A 61 SHEET 3 AA2 4 ILE A 106 GLU A 111 -1 O VAL A 108 N TYR A 73 SHEET 4 AA2 4 VAL A 116 SER A 123 -1 O VAL A 118 N GLY A 109 SHEET 1 AA3 3 VAL B 43 VAL B 47 0 SHEET 2 AA3 3 MET B 79 GLU B 86 -1 O THR B 82 N PHE B 46 SHEET 3 AA3 3 TYR B 97 LYS B 104 -1 O THR B 100 N ASP B 83 SHEET 1 AA4 4 LYS B 61 VAL B 63 0 SHEET 2 AA4 4 CYS B 72 GLN B 74 -1 O GLN B 74 N LYS B 61 SHEET 3 AA4 4 ILE B 106 GLU B 111 -1 O VAL B 108 N TYR B 73 SHEET 4 AA4 4 VAL B 116 SER B 123 -1 O VAL B 118 N GLY B 109 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.06 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.06 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.03 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.03 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.04 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.04 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.03 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.06 CISPEP 1 TYR A 92 PRO A 93 0 1.24 CISPEP 2 ASN A 113 PRO A 114 0 3.55 CISPEP 3 TYR B 92 PRO B 93 0 0.07 CISPEP 4 ASN B 113 PRO B 114 0 5.41 SITE 1 AC1 20 GLN A 11 HIS A 12 LYS A 41 VAL A 43 SITE 2 AC1 20 ASN A 44 THR A 45 PHE A 120 ASP A 121 SITE 3 AC1 20 HOH A 502 HOH A 508 HOH A 528 HOH A 536 SITE 4 AC1 20 HOH A 553 HOH A 555 HOH A 574 HOH A 590 SITE 5 AC1 20 HOH A 593 HOH A 612 HOH A 620 HOH A 649 SITE 1 AC2 22 GLN B 11 HIS B 12 SER B 15 SER B 16 SITE 2 AC2 22 THR B 17 SER B 18 LYS B 41 VAL B 43 SITE 3 AC2 22 ASN B 44 THR B 45 HIS B 119 PHE B 120 SITE 4 AC2 22 ASP B 121 ALA B 122 HOH B 520 HOH B 539 SITE 5 AC2 22 HOH B 551 HOH B 574 HOH B 616 HOH B 623 SITE 6 AC2 22 HOH B 646 HOH B 659 CRYST1 76.487 51.841 57.907 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013074 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017269 0.00000