HEADER VIRAL PROTEIN 20-NOV-14 4WZT TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN NSW0514 IN COMPLEX TITLE 2 WITH HBGA TYPE A (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN, UNP RESIDUES 225-530; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.4/SYDNEY/NSW0514/2012/AU; SOURCE 3 ORGANISM_TAXID: 1241973; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS VIRAL CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 5 10-JAN-24 4WZT 1 HETSYN LINK REVDAT 4 29-JUL-20 4WZT 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 04-MAR-15 4WZT 1 SHEET REVDAT 2 04-FEB-15 4WZT 1 JRNL REVDAT 1 17-DEC-14 4WZT 0 JRNL AUTH B.K.SINGH,M.M.LEUTHOLD,G.S.HANSMAN JRNL TITL HUMAN NOROVIRUSES' FONDNESS FOR HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2024 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25428879 JRNL DOI 10.1128/JVI.02968-14 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 81872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2734 - 5.8648 0.93 2768 146 0.1812 0.1879 REMARK 3 2 5.8648 - 4.6563 0.97 2741 144 0.1349 0.1607 REMARK 3 3 4.6563 - 4.0680 0.97 2713 142 0.1191 0.1434 REMARK 3 4 4.0680 - 3.6962 0.98 2707 143 0.1390 0.1495 REMARK 3 5 3.6962 - 3.4314 0.98 2705 141 0.1547 0.1906 REMARK 3 6 3.4314 - 3.2291 0.99 2707 143 0.1477 0.1535 REMARK 3 7 3.2291 - 3.0674 0.99 2679 141 0.1423 0.1689 REMARK 3 8 3.0674 - 2.9339 0.99 2710 143 0.1449 0.1573 REMARK 3 9 2.9339 - 2.8210 0.99 2697 142 0.1438 0.1698 REMARK 3 10 2.8210 - 2.7237 0.99 2688 141 0.1381 0.1693 REMARK 3 11 2.7237 - 2.6385 0.99 2689 142 0.1382 0.1908 REMARK 3 12 2.6385 - 2.5631 1.00 2691 142 0.1384 0.1811 REMARK 3 13 2.5631 - 2.4956 0.99 2676 141 0.1419 0.1657 REMARK 3 14 2.4956 - 2.4347 1.00 2671 140 0.1434 0.1868 REMARK 3 15 2.4347 - 2.3794 0.99 2695 142 0.1474 0.1945 REMARK 3 16 2.3794 - 2.3287 1.00 2679 141 0.1468 0.1874 REMARK 3 17 2.3287 - 2.2822 1.00 2683 142 0.1465 0.1968 REMARK 3 18 2.2822 - 2.2391 1.00 2659 140 0.1469 0.1838 REMARK 3 19 2.2391 - 2.1991 1.00 2687 141 0.1561 0.1763 REMARK 3 20 2.1991 - 2.1618 1.00 2673 141 0.1638 0.1878 REMARK 3 21 2.1618 - 2.1270 0.99 2637 139 0.1740 0.2051 REMARK 3 22 2.1270 - 2.0942 0.99 2658 140 0.1688 0.1853 REMARK 3 23 2.0942 - 2.0634 0.98 2621 138 0.2166 0.2410 REMARK 3 24 2.0634 - 2.0344 0.99 2645 140 0.1991 0.2349 REMARK 3 25 2.0344 - 2.0069 0.99 2671 140 0.2135 0.2462 REMARK 3 26 2.0069 - 1.9808 1.00 2639 139 0.2032 0.2438 REMARK 3 27 1.9808 - 1.9561 0.99 2695 142 0.2116 0.2196 REMARK 3 28 1.9561 - 1.9325 0.99 2643 139 0.2303 0.2534 REMARK 3 29 1.9325 - 1.9100 1.00 2650 140 0.2501 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5034 REMARK 3 ANGLE : 1.134 6879 REMARK 3 CHIRALITY : 0.047 770 REMARK 3 PLANARITY : 0.006 904 REMARK 3 DIHEDRAL : 12.527 1807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2345 13.6542 -24.4516 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1499 REMARK 3 T33: 0.1606 T12: -0.0216 REMARK 3 T13: 0.0230 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.8184 L22: 0.2695 REMARK 3 L33: 1.8249 L12: -0.1725 REMARK 3 L13: -0.1969 L23: 0.2024 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0708 S13: -0.0419 REMARK 3 S21: -0.0644 S22: -0.0150 S23: -0.0320 REMARK 3 S31: 0.0343 S32: 0.0376 S33: 0.0207 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3959 4.1278 -29.7147 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1443 REMARK 3 T33: 0.1963 T12: -0.0085 REMARK 3 T13: 0.0347 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.5059 L22: 1.1608 REMARK 3 L33: 2.7747 L12: -0.3687 REMARK 3 L13: 0.2275 L23: -0.6076 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.1730 S13: -0.2767 REMARK 3 S21: -0.1399 S22: -0.0155 S23: 0.0504 REMARK 3 S31: 0.3017 S32: 0.0721 S33: 0.0130 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6506 14.9748 -2.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.2261 REMARK 3 T33: 0.1570 T12: -0.0051 REMARK 3 T13: 0.0176 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.6610 L22: 1.2914 REMARK 3 L33: 1.5317 L12: 0.1314 REMARK 3 L13: 0.0457 L23: 0.4981 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: -0.1831 S13: -0.0294 REMARK 3 S21: 0.2032 S22: -0.0050 S23: -0.0214 REMARK 3 S31: 0.0373 S32: 0.0767 S33: 0.0542 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4903 29.4066 -23.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.1546 REMARK 3 T33: 0.1216 T12: 0.0093 REMARK 3 T13: -0.0182 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9129 L22: 2.4286 REMARK 3 L33: 1.3893 L12: 0.0910 REMARK 3 L13: -0.3769 L23: 0.2648 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: 0.1278 S13: 0.0746 REMARK 3 S21: 0.1065 S22: 0.0564 S23: -0.1755 REMARK 3 S31: -0.1206 S32: 0.0141 S33: -0.0337 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7563 12.4318 -27.3126 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.2463 REMARK 3 T33: 0.2390 T12: -0.0412 REMARK 3 T13: -0.0249 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.8913 L22: 2.9343 REMARK 3 L33: 0.9657 L12: -0.6238 REMARK 3 L13: -0.2569 L23: -0.4533 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.1171 S13: -0.2936 REMARK 3 S21: -0.1303 S22: -0.0308 S23: 0.3408 REMARK 3 S31: 0.1155 S32: -0.2774 S33: 0.0428 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 399 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6374 38.7232 -26.0731 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.1806 REMARK 3 T33: 0.2328 T12: -0.0126 REMARK 3 T13: 0.0186 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.1237 L22: 1.7852 REMARK 3 L33: 1.5135 L12: -0.2521 REMARK 3 L13: -0.0826 L23: 0.5702 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: 0.1181 S13: 0.2976 REMARK 3 S21: -0.1245 S22: 0.0231 S23: -0.2936 REMARK 3 S31: -0.3577 S32: 0.1457 S33: -0.0681 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2802 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978174 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89901 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.98300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 4OOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.42500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.71250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 143.13750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.71250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.13750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 412 CG OD1 ND2 REMARK 470 ARG B 484 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 938 O HOH B 1026 2.16 REMARK 500 O PHE B 257 O HOH B 1026 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 24.70 -146.10 REMARK 500 GLN A 260 52.23 -145.69 REMARK 500 ARG A 373 -14.12 -154.70 REMARK 500 SER A 442 144.78 -179.77 REMARK 500 SER B 254 25.55 -147.49 REMARK 500 GLN B 260 53.28 -144.82 REMARK 500 ARG B 373 -14.07 -154.09 REMARK 500 VAL B 386 -50.18 -121.75 REMARK 500 SER B 442 144.84 179.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 950 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1026 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 926 DISTANCE = 5.91 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN NSW0514 DBREF 4WZT A 225 530 UNP K4LM89 K4LM89_9CALI 225 530 DBREF 4WZT B 225 530 UNP K4LM89 K4LM89_9CALI 225 530 SEQADV 4WZT SER A 224 UNP K4LM89 EXPRESSION TAG SEQADV 4WZT SER B 224 UNP K4LM89 EXPRESSION TAG SEQRES 1 A 307 SER LYS PRO PHE SER VAL PRO VAL LEU THR VAL GLU GLU SEQRES 2 A 307 MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU SEQRES 3 A 307 PHE THR GLY PRO SER SER ALA PHE VAL VAL GLN PRO GLN SEQRES 4 A 307 ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR SEQRES 5 A 307 THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG GLY SEQRES 6 A 307 ASP VAL THR HIS ILE THR GLY SER ARG ASN TYR THR MET SEQRES 7 A 307 ASN LEU ALA SER GLN ASN TRP ASN ASP TYR ASP PRO THR SEQRES 8 A 307 GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL SEQRES 9 A 307 GLY LYS ILE GLN GLY VAL LEU THR GLN THR THR ARG THR SEQRES 10 A 307 ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR THR SEQRES 11 A 307 GLY SER ALA ASP PHE ALA PRO LYS LEU GLY ARG VAL GLN SEQRES 12 A 307 PHE GLU THR ASP THR ASP ARG ASP PHE GLU ALA ASN GLN SEQRES 13 A 307 ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY SEQRES 14 A 307 GLY THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL LEU SEQRES 15 A 307 PRO SER TYR SER GLY ARG ASN THR HIS ASN VAL HIS LEU SEQRES 16 A 307 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU SEQRES 17 A 307 LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR SEQRES 18 A 307 PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU TRP SEQRES 19 A 307 VAL GLN TYR PHE TYR GLN GLU ALA ALA PRO ALA GLN SER SEQRES 20 A 307 ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY SEQRES 21 A 307 ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR SEQRES 22 A 307 VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL ILE SEQRES 23 A 307 PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN SEQRES 24 A 307 GLN PHE TYR THR LEU ALA PRO MET SEQRES 1 B 307 SER LYS PRO PHE SER VAL PRO VAL LEU THR VAL GLU GLU SEQRES 2 B 307 MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU SEQRES 3 B 307 PHE THR GLY PRO SER SER ALA PHE VAL VAL GLN PRO GLN SEQRES 4 B 307 ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR SEQRES 5 B 307 THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG GLY SEQRES 6 B 307 ASP VAL THR HIS ILE THR GLY SER ARG ASN TYR THR MET SEQRES 7 B 307 ASN LEU ALA SER GLN ASN TRP ASN ASP TYR ASP PRO THR SEQRES 8 B 307 GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL SEQRES 9 B 307 GLY LYS ILE GLN GLY VAL LEU THR GLN THR THR ARG THR SEQRES 10 B 307 ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR THR SEQRES 11 B 307 GLY SER ALA ASP PHE ALA PRO LYS LEU GLY ARG VAL GLN SEQRES 12 B 307 PHE GLU THR ASP THR ASP ARG ASP PHE GLU ALA ASN GLN SEQRES 13 B 307 ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY SEQRES 14 B 307 GLY THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL LEU SEQRES 15 B 307 PRO SER TYR SER GLY ARG ASN THR HIS ASN VAL HIS LEU SEQRES 16 B 307 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU SEQRES 17 B 307 LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR SEQRES 18 B 307 PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU TRP SEQRES 19 B 307 VAL GLN TYR PHE TYR GLN GLU ALA ALA PRO ALA GLN SER SEQRES 20 B 307 ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY SEQRES 21 B 307 ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR SEQRES 22 B 307 VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL ILE SEQRES 23 B 307 PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN SEQRES 24 B 307 GLN PHE TYR THR LEU ALA PRO MET HET GLA C 1 12 HET FUC C 2 10 HET A2G C 3 14 HET GLA D 1 12 HET FUC D 2 10 HET A2G D 3 14 HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO B 601 4 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GLA 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 A2G 2(C8 H15 N O6) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *722(H2 O) HELIX 1 AA1 THR A 233 MET A 237 5 5 HELIX 2 AA2 SER A 279 ILE A 283 5 5 HELIX 3 AA3 PRO A 360 LEU A 362 5 3 HELIX 4 AA4 PRO A 454 ALA A 465 1 12 HELIX 5 AA5 THR B 233 MET B 237 5 5 HELIX 6 AA6 SER B 279 ILE B 283 5 5 HELIX 7 AA7 ALA B 359 LEU B 362 5 4 HELIX 8 AA8 PRO B 454 ALA B 465 1 12 SHEET 1 1 1 LYS A 248 THR A 251 0 SHEET 1 2 1 PHE A 286 HIS A 292 0 SHEET 1 3 1 ASN A 298 LEU A 303 0 SHEET 1 4 1 LYS A 329 THR A 337 0 SHEET 1 5 1 THR A 344 TYR A 352 0 SHEET 1 6 1 PHE A 358 ALA A 359 0 SHEET 1 7 1 ARG A 364 THR A 369 0 SHEET 1 8 1 THR A 381 ILE A 389 0 SHEET 1 9 1 GLU A 429 THR A 437 0 SHEET 1 10 1 GLY A 440 GLY A 443 0 SHEET 1 11 1 ASP A 448 CYS A 451 0 SHEET 1 12 1 VAL A 472 ASN A 479 0 SHEET 1 13 1 ARG A 484 HIS A 492 0 SHEET 1 14 1 TYR A 496 ALA A 500 0 SHEET 1 15 1 HIS A 505 ASP A 506 0 SHEET 1 16 1 TYR A 514 VAL A 521 0 SHEET 1 17 1 LYS B 248 THR B 251 0 SHEET 1 18 1 PHE B 286 HIS B 292 0 SHEET 1 19 1 ASN B 298 LEU B 303 0 SHEET 1 20 1 LYS B 329 THR B 337 0 SHEET 1 21 1 THR B 344 TYR B 352 0 SHEET 1 22 1 ARG B 364 THR B 369 0 SHEET 1 23 1 THR B 381 ILE B 389 0 SHEET 1 24 1 GLU B 429 THR B 437 0 SHEET 1 25 1 GLY B 440 GLY B 443 0 SHEET 1 26 1 ASP B 448 CYS B 451 0 SHEET 1 27 1 VAL B 472 ASN B 479 0 SHEET 1 28 1 ARG B 484 HIS B 492 0 SHEET 1 29 1 TYR B 496 ALA B 500 0 SHEET 1 30 1 HIS B 505 ASP B 506 0 SHEET 1 31 1 TYR B 514 VAL B 521 0 LINK O2 GLA C 1 C1 FUC C 2 1555 1555 1.40 LINK O3 GLA C 1 C1 A2G C 3 1555 1555 1.40 LINK O2 GLA D 1 C1 FUC D 2 1555 1555 1.44 LINK O3 GLA D 1 C1 A2G D 3 1555 1555 1.40 CISPEP 1 GLU A 399 PRO A 400 0 -6.33 CISPEP 2 GLU B 399 PRO B 400 0 -6.80 CRYST1 104.740 104.740 190.850 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005240 0.00000