data_4X1A # _entry.id 4X1A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4X1A pdb_00004x1a 10.2210/pdb4x1a/pdb WWPDB D_1000204888 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-13 2 'Structure model' 2 0 2017-08-30 3 'Structure model' 2 1 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Author supporting evidence' 4 2 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Database references' 7 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' pdbx_audit_support 4 2 'Structure model' pdbx_distant_solvent_atoms 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' pdbx_validate_close_contact 7 2 'Structure model' pdbx_validate_symm_contact 8 2 'Structure model' struct_conn 9 2 'Structure model' struct_site_gen 10 3 'Structure model' chem_comp_atom 11 3 'Structure model' chem_comp_bond 12 3 'Structure model' database_2 13 3 'Structure model' pdbx_struct_conn_angle 14 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_seq_id' 6 2 'Structure model' '_atom_site.label_alt_id' 7 2 'Structure model' '_atom_site.occupancy' 8 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 9 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 10 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 11 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 12 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 13 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 14 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 15 2 'Structure model' '_atom_site_anisotrop.pdbx_label_alt_id' 16 2 'Structure model' '_pdbx_audit_support.funding_organization' 17 2 'Structure model' '_pdbx_distant_solvent_atoms.auth_seq_id' 18 2 'Structure model' '_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance' 19 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 20 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 21 2 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1' 22 2 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 23 2 'Structure model' '_struct_site_gen.auth_seq_id' 24 3 'Structure model' '_database_2.pdbx_DOI' 25 3 'Structure model' '_database_2.pdbx_database_accession' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 30 3 'Structure model' '_pdbx_struct_conn_angle.value' 31 3 'Structure model' '_struct_conn.pdbx_dist_value' 32 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4X1A _pdbx_database_status.recvd_initial_deposition_date 2014-11-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Cardin, C.J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Organometallics _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0276-7333 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru-dppz Complexes to DNA' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/om501208x _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Beer, H.' 2 ? primary 'Buchner, K.' 3 ? primary 'Cardin, D.J.' 4 ? primary 'Cardin, C.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') ; 3045.992 1 ? ? ? ? 2 non-polymer syn "(10,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium" 775.785 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 4 water nat water 18.015 91 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "(10,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium" 3WB 3 'BARIUM ION' BA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3WB non-polymer . "(10,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium" ? 'C40 H26 N12 Ru' 775.785 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3WB 1 101 1 3WB RMV A . C 3 BA 1 102 1 BA BA A . D 4 HOH 1 201 85 HOH HOH A . D 4 HOH 2 202 45 HOH HOH A . D 4 HOH 3 203 55 HOH HOH A . D 4 HOH 4 204 40 HOH HOH A . D 4 HOH 5 205 52 HOH HOH A . D 4 HOH 6 206 56 HOH HOH A . D 4 HOH 7 207 20 HOH HOH A . D 4 HOH 8 208 57 HOH HOH A . D 4 HOH 9 209 41 HOH HOH A . D 4 HOH 10 210 29 HOH HOH A . D 4 HOH 11 211 31 HOH HOH A . D 4 HOH 12 212 90 HOH HOH A . D 4 HOH 13 213 73 HOH HOH A . D 4 HOH 14 214 19 HOH HOH A . D 4 HOH 15 215 59 HOH HOH A . D 4 HOH 16 216 34 HOH HOH A . D 4 HOH 17 217 43 HOH HOH A . D 4 HOH 18 218 4 HOH HOH A . D 4 HOH 19 219 36 HOH HOH A . D 4 HOH 20 220 2 HOH HOH A . D 4 HOH 21 221 27 HOH HOH A . D 4 HOH 22 222 47 HOH HOH A . D 4 HOH 23 223 22 HOH HOH A . D 4 HOH 24 224 78 HOH HOH A . D 4 HOH 25 225 18 HOH HOH A . D 4 HOH 26 226 62 HOH HOH A . D 4 HOH 27 227 28 HOH HOH A . D 4 HOH 28 228 39 HOH HOH A . D 4 HOH 29 229 17 HOH HOH A . D 4 HOH 30 230 11 HOH HOH A . D 4 HOH 31 231 5 HOH HOH A . D 4 HOH 32 232 30 HOH HOH A . D 4 HOH 33 233 26 HOH HOH A . D 4 HOH 34 234 25 HOH HOH A . D 4 HOH 35 235 21 HOH HOH A . D 4 HOH 36 236 38 HOH HOH A . D 4 HOH 37 237 87 HOH HOH A . D 4 HOH 38 238 67 HOH HOH A . D 4 HOH 39 239 24 HOH HOH A . D 4 HOH 40 240 16 HOH HOH A . D 4 HOH 41 241 82 HOH HOH A . D 4 HOH 42 242 3 HOH HOH A . D 4 HOH 43 243 53 HOH HOH A . D 4 HOH 44 244 32 HOH HOH A . D 4 HOH 45 245 50 HOH HOH A . D 4 HOH 46 246 37 HOH HOH A . D 4 HOH 47 247 74 HOH HOH A . D 4 HOH 48 248 66 HOH HOH A . D 4 HOH 49 249 33 HOH HOH A . D 4 HOH 50 250 9 HOH HOH A . D 4 HOH 51 251 70 HOH HOH A . D 4 HOH 52 252 8 HOH HOH A . D 4 HOH 53 253 7 HOH HOH A . D 4 HOH 54 254 1 HOH HOH A . D 4 HOH 55 255 14 HOH HOH A . D 4 HOH 56 256 63 HOH HOH A . D 4 HOH 57 257 13 HOH HOH A . D 4 HOH 58 258 10 HOH HOH A . D 4 HOH 59 259 54 HOH HOH A . D 4 HOH 60 260 68 HOH HOH A . D 4 HOH 61 261 44 HOH HOH A . D 4 HOH 62 262 84 HOH HOH A . D 4 HOH 63 263 46 HOH HOH A . D 4 HOH 64 264 69 HOH HOH A . D 4 HOH 65 265 48 HOH HOH A . D 4 HOH 66 266 86 HOH HOH A . D 4 HOH 67 267 23 HOH HOH A . D 4 HOH 68 268 35 HOH HOH A . D 4 HOH 69 269 72 HOH HOH A . D 4 HOH 70 270 42 HOH HOH A . D 4 HOH 71 271 83 HOH HOH A . D 4 HOH 72 272 79 HOH HOH A . D 4 HOH 73 273 92 HOH HOH A . D 4 HOH 74 274 77 HOH HOH A . D 4 HOH 75 275 58 HOH HOH A . D 4 HOH 76 276 65 HOH HOH A . D 4 HOH 77 277 60 HOH HOH A . D 4 HOH 78 278 75 HOH HOH A . D 4 HOH 79 279 12 HOH HOH A . D 4 HOH 80 280 80 HOH HOH A . D 4 HOH 81 281 64 HOH HOH A . D 4 HOH 82 282 15 HOH HOH A . D 4 HOH 83 283 6 HOH HOH A . D 4 HOH 84 284 49 HOH HOH A . D 4 HOH 85 285 91 HOH HOH A . D 4 HOH 86 286 81 HOH HOH A . D 4 HOH 87 287 88 HOH HOH A . D 4 HOH 88 288 51 HOH HOH A . D 4 HOH 89 289 71 HOH HOH A . D 4 HOH 90 290 89 HOH HOH A . D 4 HOH 91 291 61 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4X1A _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.250 _cell.length_a_esd ? _cell.length_b 42.250 _cell.length_b_esd ? _cell.length_c 39.550 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4X1A _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1uL 2mM d(TCGGCGCCGA), 1ul 4mM rac-[Ru(TAP)2(dppz-10,12-Me)]2+, 6ul of a solution containing 20mM BaCl2, 80mM KCl, 12mM Spermine, 40mM Na-cacodylate pH 7, 10% v/v 2-methyl-2,4-pentanediol. Equilibrated against 1ml 35% v/v 2-methyl-2,4-pentanediol. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7749 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.7749 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4X1A _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.89 _reflns.d_resolution_low 17.05 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27563 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_Rmerge_I_obs 0.030 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 0.723 _reflns_shell.d_res_high 0.89 _reflns_shell.d_res_low 0.91 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 95.9 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] -0.25 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.25 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] 0.50 _refine.B_iso_max ? _refine.B_iso_mean 14.688 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.989 _refine.correlation_coeff_Fo_to_Fc_free 0.989 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4X1A _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.89 _refine.ls_d_res_low 17.05 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 26155 _refine.ls_number_reflns_R_free 1372 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.11 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.09623 _refine.ls_R_factor_R_free 0.10627 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.09569 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.011 _refine.pdbx_overall_ESU_R_Free 0.011 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.268 _refine.overall_SU_ML 0.007 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 347 _refine_hist.d_res_high 0.89 _refine_hist.d_res_low 17.05 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.040 0.013 292 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 138 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.756 1.610 460 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.465 3.000 316 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.073 0.200 30 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.040 0.020 178 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 76 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.814 1.159 292 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.812 ? 293 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.126 1.737 461 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.579 14.328 746 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 2.358 ? 695 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 7.427 3.000 292 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 37.855 5.000 17 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 10.683 5.000 331 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 0.890 _refine_ls_shell.d_res_low 0.913 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.number_reflns_R_work 1809 _refine_ls_shell.percent_reflns_obs 95.34 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.205 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4X1A _struct.title 'Lambda-[Ru(TAP)2(dppz-10,12-Me)]2+ bound to d(TCGGCGCCGA)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4X1A _struct_keywords.text 'Ruthenium, DNA, polypyridyl' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4X1A _struct_ref.pdbx_db_accession 4X1A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4X1A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4X1A _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1680 ? 1 MORE -21 ? 1 'SSA (A^2)' 4590 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -19.7750000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 102 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 218 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 220 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 231 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 242 1_555 ? ? ? ? ? ? ? 2.826 ? ? metalc6 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O A ? A BA 102 A HOH 254 1_555 ? ? ? ? ? ? ? 2.845 ? ? metalc7 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O B ? A BA 102 A HOH 254 1_555 ? ? ? ? ? ? ? 2.781 ? ? metalc8 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 283 1_555 ? ? ? ? ? ? ? 2.813 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 218 ? 1_555 71.7 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 127.2 ? 3 O ? D HOH . ? A HOH 218 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_555 139.4 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 138.0 ? 5 O ? D HOH . ? A HOH 218 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 76.0 ? 6 O ? D HOH . ? A HOH 220 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 67.6 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 64.0 ? 8 O ? D HOH . ? A HOH 218 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 83.0 ? 9 O ? D HOH . ? A HOH 220 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 136.6 ? 10 O ? D HOH . ? A HOH 231 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 137.0 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O A D HOH . ? A HOH 254 ? 1_555 111.5 ? 12 O ? D HOH . ? A HOH 218 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O A D HOH . ? A HOH 254 ? 1_555 148.8 ? 13 O ? D HOH . ? A HOH 220 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O A D HOH . ? A HOH 254 ? 1_555 65.0 ? 14 O ? D HOH . ? A HOH 231 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O A D HOH . ? A HOH 254 ? 1_555 110.1 ? 15 O ? D HOH . ? A HOH 242 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O A D HOH . ? A HOH 254 ? 1_555 72.0 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O B D HOH . ? A HOH 254 ? 1_555 85.6 ? 17 O ? D HOH . ? A HOH 218 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O B D HOH . ? A HOH 254 ? 1_555 140.5 ? 18 O ? D HOH . ? A HOH 220 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O B D HOH . ? A HOH 254 ? 1_555 80.0 ? 19 O ? D HOH . ? A HOH 231 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O B D HOH . ? A HOH 254 ? 1_555 135.7 ? 20 O ? D HOH . ? A HOH 242 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O B D HOH . ? A HOH 254 ? 1_555 57.8 ? 21 O A D HOH . ? A HOH 254 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O B D HOH . ? A HOH 254 ? 1_555 25.8 ? 22 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 123.8 ? 23 O ? D HOH . ? A HOH 218 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 76.2 ? 24 O ? D HOH . ? A HOH 220 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 107.2 ? 25 O ? D HOH . ? A HOH 231 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 71.4 ? 26 O ? D HOH . ? A HOH 242 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 67.3 ? 27 O A D HOH . ? A HOH 254 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 77.1 ? 28 O B D HOH . ? A HOH 254 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 283 ? 1_555 91.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3WB 101 ? 10 'binding site for residue 3WB A 101' AC2 Software A BA 102 ? 8 'binding site for residue BA A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DT A 1 ? DT A 1 . ? 1_555 ? 2 AC1 10 DC A 2 ? DC A 2 . ? 1_555 ? 3 AC1 10 DG A 3 ? DG A 3 . ? 1_555 ? 4 AC1 10 DG A 3 ? DG A 3 . ? 4_455 ? 5 AC1 10 DG A 4 ? DG A 4 . ? 4_455 ? 6 AC1 10 DC A 5 ? DC A 5 . ? 4_455 ? 7 AC1 10 DC A 7 ? DC A 7 . ? 5_454 ? 8 AC1 10 DC A 8 ? DC A 8 . ? 5_454 ? 9 AC1 10 DG A 9 ? DG A 9 . ? 8_554 ? 10 AC1 10 DA A 10 ? DA A 10 . ? 5_454 ? 11 AC2 8 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 8 DG A 4 ? DG A 4 . ? 1_555 ? 13 AC2 8 HOH D . ? HOH A 218 . ? 1_555 ? 14 AC2 8 HOH D . ? HOH A 242 . ? 1_555 ? 15 AC2 8 HOH D . ? HOH A 254 . ? 1_555 ? 16 AC2 8 HOH D . ? HOH A 283 . ? 1_555 ? 17 AC2 8 HOH D . ? HOH A 220 . ? 1_555 ? 18 AC2 8 HOH D . ? HOH A 231 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 287 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 289 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 260 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 287 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_554 _pdbx_validate_symm_contact.dist 2.12 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 10 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 10 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 10 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.27 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -8.43 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 5 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.116 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 273 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 290 ? 5.94 . 2 1 O ? A HOH 291 ? 6.39 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3WB C37 C Y N 1 3WB C38 C Y N 2 3WB N11 N Y N 3 3WB C35 C Y N 4 3WB C36 C Y N 5 3WB C29 C Y N 6 3WB N12 N Y N 7 3WB C34 C Y N 8 3WB C33 C Y N 9 3WB C32 C Y N 10 3WB N10 N Y N 11 3WB C31 C Y N 12 3WB C30 C Y N 13 3WB N9 N Y N 14 3WB RU RU N N 15 3WB N1 N Y N 16 3WB C12 C Y N 17 3WB C11 C Y N 18 3WB C9 C Y N 19 3WB N8 N Y N 20 3WB C28 C Y N 21 3WB C27 C Y N 22 3WB N7 N Y N 23 3WB C26 C Y N 24 3WB C25 C Y N 25 3WB C24 C Y N 26 3WB C23 C Y N 27 3WB C22 C Y N 28 3WB N6 N Y N 29 3WB C21 C Y N 30 3WB C20 C Y N 31 3WB C19 C Y N 32 3WB N5 N Y N 33 3WB N2 N Y N 34 3WB C1 C Y N 35 3WB C10 C Y N 36 3WB C8 C Y N 37 3WB C2 C Y N 38 3WB C3 C Y N 39 3WB C4 C Y N 40 3WB C5 C Y N 41 3WB C6 C Y N 42 3WB C7 C Y N 43 3WB N4 N Y N 44 3WB N3 N Y N 45 3WB C15 C Y N 46 3WB C13 C Y N 47 3WB C16 C Y N 48 3WB C17 C Y N 49 3WB C18 C Y N 50 3WB C14 C Y N 51 3WB C39 C N N 52 3WB C40 C N N 53 3WB H37 H N N 54 3WB H38 H N N 55 3WB H34 H N N 56 3WB H33 H N N 57 3WB H31 H N N 58 3WB H30 H N N 59 3WB H12 H N N 60 3WB H11 H N N 61 3WB H9 H N N 62 3WB H28 H N N 63 3WB H27 H N N 64 3WB H24 H N N 65 3WB H23 H N N 66 3WB H21 H N N 67 3WB H20 H N N 68 3WB H2 H N N 69 3WB H3 H N N 70 3WB H4 H N N 71 3WB H17 H N N 72 3WB H14 H N N 73 3WB H392 H N N 74 3WB H39 H N N 75 3WB H391 H N N 76 3WB H40 H N N 77 3WB H402 H N N 78 3WB H401 H N N 79 BA BA BA N N 80 DA OP3 O N N 81 DA P P N N 82 DA OP1 O N N 83 DA OP2 O N N 84 DA "O5'" O N N 85 DA "C5'" C N N 86 DA "C4'" C N R 87 DA "O4'" O N N 88 DA "C3'" C N S 89 DA "O3'" O N N 90 DA "C2'" C N N 91 DA "C1'" C N R 92 DA N9 N Y N 93 DA C8 C Y N 94 DA N7 N Y N 95 DA C5 C Y N 96 DA C6 C Y N 97 DA N6 N N N 98 DA N1 N Y N 99 DA C2 C Y N 100 DA N3 N Y N 101 DA C4 C Y N 102 DA HOP3 H N N 103 DA HOP2 H N N 104 DA "H5'" H N N 105 DA "H5''" H N N 106 DA "H4'" H N N 107 DA "H3'" H N N 108 DA "HO3'" H N N 109 DA "H2'" H N N 110 DA "H2''" H N N 111 DA "H1'" H N N 112 DA H8 H N N 113 DA H61 H N N 114 DA H62 H N N 115 DA H2 H N N 116 DC OP3 O N N 117 DC P P N N 118 DC OP1 O N N 119 DC OP2 O N N 120 DC "O5'" O N N 121 DC "C5'" C N N 122 DC "C4'" C N R 123 DC "O4'" O N N 124 DC "C3'" C N S 125 DC "O3'" O N N 126 DC "C2'" C N N 127 DC "C1'" C N R 128 DC N1 N N N 129 DC C2 C N N 130 DC O2 O N N 131 DC N3 N N N 132 DC C4 C N N 133 DC N4 N N N 134 DC C5 C N N 135 DC C6 C N N 136 DC HOP3 H N N 137 DC HOP2 H N N 138 DC "H5'" H N N 139 DC "H5''" H N N 140 DC "H4'" H N N 141 DC "H3'" H N N 142 DC "HO3'" H N N 143 DC "H2'" H N N 144 DC "H2''" H N N 145 DC "H1'" H N N 146 DC H41 H N N 147 DC H42 H N N 148 DC H5 H N N 149 DC H6 H N N 150 DG OP3 O N N 151 DG P P N N 152 DG OP1 O N N 153 DG OP2 O N N 154 DG "O5'" O N N 155 DG "C5'" C N N 156 DG "C4'" C N R 157 DG "O4'" O N N 158 DG "C3'" C N S 159 DG "O3'" O N N 160 DG "C2'" C N N 161 DG "C1'" C N R 162 DG N9 N Y N 163 DG C8 C Y N 164 DG N7 N Y N 165 DG C5 C Y N 166 DG C6 C N N 167 DG O6 O N N 168 DG N1 N N N 169 DG C2 C N N 170 DG N2 N N N 171 DG N3 N N N 172 DG C4 C Y N 173 DG HOP3 H N N 174 DG HOP2 H N N 175 DG "H5'" H N N 176 DG "H5''" H N N 177 DG "H4'" H N N 178 DG "H3'" H N N 179 DG "HO3'" H N N 180 DG "H2'" H N N 181 DG "H2''" H N N 182 DG "H1'" H N N 183 DG H8 H N N 184 DG H1 H N N 185 DG H21 H N N 186 DG H22 H N N 187 DT OP3 O N N 188 DT P P N N 189 DT OP1 O N N 190 DT OP2 O N N 191 DT "O5'" O N N 192 DT "C5'" C N N 193 DT "C4'" C N R 194 DT "O4'" O N N 195 DT "C3'" C N S 196 DT "O3'" O N N 197 DT "C2'" C N N 198 DT "C1'" C N R 199 DT N1 N N N 200 DT C2 C N N 201 DT O2 O N N 202 DT N3 N N N 203 DT C4 C N N 204 DT O4 O N N 205 DT C5 C N N 206 DT C7 C N N 207 DT C6 C N N 208 DT HOP3 H N N 209 DT HOP2 H N N 210 DT "H5'" H N N 211 DT "H5''" H N N 212 DT "H4'" H N N 213 DT "H3'" H N N 214 DT "HO3'" H N N 215 DT "H2'" H N N 216 DT "H2''" H N N 217 DT "H1'" H N N 218 DT H3 H N N 219 DT H71 H N N 220 DT H72 H N N 221 DT H73 H N N 222 DT H6 H N N 223 HOH O O N N 224 HOH H1 H N N 225 HOH H2 H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3WB C33 C34 doub Y N 1 3WB C33 C32 sing Y N 2 3WB C34 C35 sing Y N 3 3WB N10 C32 sing Y N 4 3WB N10 C31 doub Y N 5 3WB C32 C29 doub Y N 6 3WB C35 N11 sing Y N 7 3WB C35 C36 doub Y N 8 3WB N11 C37 doub Y N 9 3WB C31 C30 sing Y N 10 3WB C29 C36 sing Y N 11 3WB C29 N9 sing Y N 12 3WB C36 N12 sing Y N 13 3WB C37 C38 sing Y N 14 3WB C30 N9 doub Y N 15 3WB N9 RU sing N N 16 3WB N12 C38 doub Y N 17 3WB N12 RU sing N N 18 3WB C28 C27 sing Y N 19 3WB C28 N8 doub Y N 20 3WB C27 N7 doub Y N 21 3WB C2 C3 sing Y N 22 3WB C2 N2 doub Y N 23 3WB N8 RU sing N N 24 3WB N8 C26 sing Y N 25 3WB RU N2 sing N N 26 3WB RU N1 sing N N 27 3WB RU N5 sing N N 28 3WB N7 C25 sing Y N 29 3WB C3 C4 doub Y N 30 3WB N2 C1 sing Y N 31 3WB C26 C25 doub Y N 32 3WB C26 C19 sing Y N 33 3WB C25 C24 sing Y N 34 3WB C4 C5 sing Y N 35 3WB C1 C5 doub Y N 36 3WB C1 C10 sing Y N 37 3WB N1 C10 sing Y N 38 3WB N1 C12 doub Y N 39 3WB C5 C6 sing Y N 40 3WB N5 C19 sing Y N 41 3WB N5 C20 doub Y N 42 3WB C10 C8 doub Y N 43 3WB C12 C11 sing Y N 44 3WB C19 C22 doub Y N 45 3WB C24 C23 doub Y N 46 3WB C20 C21 sing Y N 47 3WB C6 N3 sing Y N 48 3WB C6 C7 doub Y N 49 3WB C11 C9 doub Y N 50 3WB C8 C9 sing Y N 51 3WB C8 C7 sing Y N 52 3WB C22 C23 sing Y N 53 3WB C22 N6 sing Y N 54 3WB N3 C15 doub Y N 55 3WB C7 N4 sing Y N 56 3WB C21 N6 doub Y N 57 3WB C40 C16 sing N N 58 3WB C15 C16 sing Y N 59 3WB C15 C13 sing Y N 60 3WB N4 C13 doub Y N 61 3WB C16 C17 doub Y N 62 3WB C13 C14 sing Y N 63 3WB C17 C18 sing Y N 64 3WB C14 C18 doub Y N 65 3WB C18 C39 sing N N 66 3WB C37 H37 sing N N 67 3WB C38 H38 sing N N 68 3WB C34 H34 sing N N 69 3WB C33 H33 sing N N 70 3WB C31 H31 sing N N 71 3WB C30 H30 sing N N 72 3WB C12 H12 sing N N 73 3WB C11 H11 sing N N 74 3WB C9 H9 sing N N 75 3WB C28 H28 sing N N 76 3WB C27 H27 sing N N 77 3WB C24 H24 sing N N 78 3WB C23 H23 sing N N 79 3WB C21 H21 sing N N 80 3WB C20 H20 sing N N 81 3WB C2 H2 sing N N 82 3WB C3 H3 sing N N 83 3WB C4 H4 sing N N 84 3WB C17 H17 sing N N 85 3WB C14 H14 sing N N 86 3WB C39 H392 sing N N 87 3WB C39 H39 sing N N 88 3WB C39 H391 sing N N 89 3WB C40 H40 sing N N 90 3WB C40 H402 sing N N 91 3WB C40 H401 sing N N 92 DA OP3 P sing N N 93 DA OP3 HOP3 sing N N 94 DA P OP1 doub N N 95 DA P OP2 sing N N 96 DA P "O5'" sing N N 97 DA OP2 HOP2 sing N N 98 DA "O5'" "C5'" sing N N 99 DA "C5'" "C4'" sing N N 100 DA "C5'" "H5'" sing N N 101 DA "C5'" "H5''" sing N N 102 DA "C4'" "O4'" sing N N 103 DA "C4'" "C3'" sing N N 104 DA "C4'" "H4'" sing N N 105 DA "O4'" "C1'" sing N N 106 DA "C3'" "O3'" sing N N 107 DA "C3'" "C2'" sing N N 108 DA "C3'" "H3'" sing N N 109 DA "O3'" "HO3'" sing N N 110 DA "C2'" "C1'" sing N N 111 DA "C2'" "H2'" sing N N 112 DA "C2'" "H2''" sing N N 113 DA "C1'" N9 sing N N 114 DA "C1'" "H1'" sing N N 115 DA N9 C8 sing Y N 116 DA N9 C4 sing Y N 117 DA C8 N7 doub Y N 118 DA C8 H8 sing N N 119 DA N7 C5 sing Y N 120 DA C5 C6 sing Y N 121 DA C5 C4 doub Y N 122 DA C6 N6 sing N N 123 DA C6 N1 doub Y N 124 DA N6 H61 sing N N 125 DA N6 H62 sing N N 126 DA N1 C2 sing Y N 127 DA C2 N3 doub Y N 128 DA C2 H2 sing N N 129 DA N3 C4 sing Y N 130 DC OP3 P sing N N 131 DC OP3 HOP3 sing N N 132 DC P OP1 doub N N 133 DC P OP2 sing N N 134 DC P "O5'" sing N N 135 DC OP2 HOP2 sing N N 136 DC "O5'" "C5'" sing N N 137 DC "C5'" "C4'" sing N N 138 DC "C5'" "H5'" sing N N 139 DC "C5'" "H5''" sing N N 140 DC "C4'" "O4'" sing N N 141 DC "C4'" "C3'" sing N N 142 DC "C4'" "H4'" sing N N 143 DC "O4'" "C1'" sing N N 144 DC "C3'" "O3'" sing N N 145 DC "C3'" "C2'" sing N N 146 DC "C3'" "H3'" sing N N 147 DC "O3'" "HO3'" sing N N 148 DC "C2'" "C1'" sing N N 149 DC "C2'" "H2'" sing N N 150 DC "C2'" "H2''" sing N N 151 DC "C1'" N1 sing N N 152 DC "C1'" "H1'" sing N N 153 DC N1 C2 sing N N 154 DC N1 C6 sing N N 155 DC C2 O2 doub N N 156 DC C2 N3 sing N N 157 DC N3 C4 doub N N 158 DC C4 N4 sing N N 159 DC C4 C5 sing N N 160 DC N4 H41 sing N N 161 DC N4 H42 sing N N 162 DC C5 C6 doub N N 163 DC C5 H5 sing N N 164 DC C6 H6 sing N N 165 DG OP3 P sing N N 166 DG OP3 HOP3 sing N N 167 DG P OP1 doub N N 168 DG P OP2 sing N N 169 DG P "O5'" sing N N 170 DG OP2 HOP2 sing N N 171 DG "O5'" "C5'" sing N N 172 DG "C5'" "C4'" sing N N 173 DG "C5'" "H5'" sing N N 174 DG "C5'" "H5''" sing N N 175 DG "C4'" "O4'" sing N N 176 DG "C4'" "C3'" sing N N 177 DG "C4'" "H4'" sing N N 178 DG "O4'" "C1'" sing N N 179 DG "C3'" "O3'" sing N N 180 DG "C3'" "C2'" sing N N 181 DG "C3'" "H3'" sing N N 182 DG "O3'" "HO3'" sing N N 183 DG "C2'" "C1'" sing N N 184 DG "C2'" "H2'" sing N N 185 DG "C2'" "H2''" sing N N 186 DG "C1'" N9 sing N N 187 DG "C1'" "H1'" sing N N 188 DG N9 C8 sing Y N 189 DG N9 C4 sing Y N 190 DG C8 N7 doub Y N 191 DG C8 H8 sing N N 192 DG N7 C5 sing Y N 193 DG C5 C6 sing N N 194 DG C5 C4 doub Y N 195 DG C6 O6 doub N N 196 DG C6 N1 sing N N 197 DG N1 C2 sing N N 198 DG N1 H1 sing N N 199 DG C2 N2 sing N N 200 DG C2 N3 doub N N 201 DG N2 H21 sing N N 202 DG N2 H22 sing N N 203 DG N3 C4 sing N N 204 DT OP3 P sing N N 205 DT OP3 HOP3 sing N N 206 DT P OP1 doub N N 207 DT P OP2 sing N N 208 DT P "O5'" sing N N 209 DT OP2 HOP2 sing N N 210 DT "O5'" "C5'" sing N N 211 DT "C5'" "C4'" sing N N 212 DT "C5'" "H5'" sing N N 213 DT "C5'" "H5''" sing N N 214 DT "C4'" "O4'" sing N N 215 DT "C4'" "C3'" sing N N 216 DT "C4'" "H4'" sing N N 217 DT "O4'" "C1'" sing N N 218 DT "C3'" "O3'" sing N N 219 DT "C3'" "C2'" sing N N 220 DT "C3'" "H3'" sing N N 221 DT "O3'" "HO3'" sing N N 222 DT "C2'" "C1'" sing N N 223 DT "C2'" "H2'" sing N N 224 DT "C2'" "H2''" sing N N 225 DT "C1'" N1 sing N N 226 DT "C1'" "H1'" sing N N 227 DT N1 C2 sing N N 228 DT N1 C6 sing N N 229 DT C2 O2 doub N N 230 DT C2 N3 sing N N 231 DT N3 C4 sing N N 232 DT N3 H3 sing N N 233 DT C4 O4 doub N N 234 DT C4 C5 sing N N 235 DT C5 C7 sing N N 236 DT C5 C6 doub N N 237 DT C7 H71 sing N N 238 DT C7 H72 sing N N 239 DT C7 H73 sing N N 240 DT C6 H6 sing N N 241 HOH O H1 sing N N 242 HOH O H2 sing N N 243 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4X1A 'double helix' 4X1A 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 8_554 0.129 -0.091 0.274 -12.288 8.101 1.501 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 8_554 -0.229 -0.047 0.137 24.477 -4.763 -0.523 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 8_554 -0.204 -0.147 -0.038 -8.758 1.197 -1.599 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DC 5 1_555 A DG 6 8_554 0.241 -0.099 0.285 -4.197 -5.562 -0.472 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 8_554 -0.241 -0.099 0.285 4.197 -5.562 -0.472 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 8_554 0.204 -0.147 -0.038 8.758 1.197 -1.599 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 8_554 0.229 -0.047 0.137 -24.477 -4.763 -0.523 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 8_554 -0.129 -0.091 0.274 12.288 8.101 1.501 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 8_554 A DG 3 1_555 A DC 8 8_554 -0.496 1.666 2.590 2.898 3.263 19.216 3.578 2.596 2.728 9.616 -8.538 19.701 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 8_554 A DG 4 1_555 A DC 7 8_554 -0.124 0.796 5.229 -2.883 50.830 15.210 -5.327 -0.214 2.317 74.344 4.216 52.989 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 8_554 A DC 5 1_555 A DG 6 8_554 -0.809 0.082 3.243 -3.005 -4.117 39.045 0.610 0.846 3.269 -6.127 4.473 39.364 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 8_554 A DG 6 1_555 A DC 5 8_554 0.000 0.705 3.365 0.000 24.982 27.706 -2.652 0.000 2.994 42.776 0.000 37.141 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 8_554 A DC 7 1_555 A DG 4 8_554 0.809 0.082 3.243 3.005 -4.117 39.045 0.610 -0.846 3.269 -6.127 -4.473 39.364 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 8_554 A DC 8 1_555 A DG 3 8_554 0.124 0.796 5.229 2.883 50.830 15.210 -5.327 0.214 2.317 74.344 -4.216 52.989 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 8_554 A DG 9 1_555 A DC 2 8_554 0.496 1.666 2.590 -2.898 3.263 19.216 3.578 -2.596 2.728 9.616 8.538 19.701 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # _pdbx_audit_support.funding_organization 'Biotechnology and Biological Sciences Research Council' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number BB/K019279/1 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 4X1A _atom_sites.fract_transf_matrix[1][1] 0.023669 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023669 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025284 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C H N O P RU # loop_