HEADER BMP BINDING PROTEIN 24-NOV-14 4X1J TITLE X-RAY CRYSTAL STRUCTURE OF THE DIMERIC BMP ANTAGONIST NBL1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROBLASTOMA SUPPRESSOR OF TUMORIGENICITY 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 52-167; COMPND 5 SYNONYM: DAN DOMAIN FAMILY MEMBER 1,PROTEIN N03,ZINC FINGER PROTEIN COMPND 6 DAN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NBL1, DAN, DAND1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BMP ANTAGONIST, DAN FAMILY, CYSTINE-KNOT, BMP BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.B.THOMPSON,K.NOLAN,C.KATTAMURI REVDAT 7 29-JUL-20 4X1J 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 25-DEC-19 4X1J 1 REMARK REVDAT 5 20-SEP-17 4X1J 1 REMARK REVDAT 4 17-AUG-16 4X1J 1 AUTHOR REVDAT 3 04-MAR-15 4X1J 1 JRNL REVDAT 2 18-FEB-15 4X1J 1 JRNL REVDAT 1 14-JAN-15 4X1J 0 JRNL AUTH K.NOLAN,C.KATTAMURI,D.M.LUEDEKE,E.B.ANGERMAN,S.A.RANKIN, JRNL AUTH 2 M.L.STEVENS,A.M.ZORN,T.B.THOMPSON JRNL TITL STRUCTURE OF NEUROBLASTOMA SUPPRESSOR OF TUMORIGENICITY 1 JRNL TITL 2 (NBL1): INSIGHTS FOR THE FUNCTIONAL VARIABILITY ACROSS BONE JRNL TITL 3 MORPHOGENETIC PROTEIN (BMP) ANTAGONISTS. JRNL REF J.BIOL.CHEM. V. 290 4759 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25561725 JRNL DOI 10.1074/JBC.M114.628412 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1394 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1279 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1886 ; 1.523 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2965 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 172 ; 6.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;35.874 ;25.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 236 ;15.946 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1526 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 285 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 703 ; 6.921 ; 3.507 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 702 ; 6.921 ; 3.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 870 ; 9.017 ; 5.173 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 871 ; 9.013 ; 5.176 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 691 ;12.385 ; 4.769 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 691 ;12.152 ; 4.776 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1017 ;15.747 ; 6.887 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1419 ;16.680 ;29.775 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1420 ;16.676 ;29.915 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2673 ; 3.331 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 3 ; NULL ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2639 ;43.600 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 29 124 B 29 124 3491 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 76.561 137.113 18.182 REMARK 3 T TENSOR REMARK 3 T11: 0.6667 T22: 0.4448 REMARK 3 T33: 0.5045 T12: 0.1816 REMARK 3 T13: -0.0350 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 13.1876 L22: 10.6773 REMARK 3 L33: 18.4650 L12: 1.7140 REMARK 3 L13: 0.6252 L23: 0.7218 REMARK 3 S TENSOR REMARK 3 S11: 0.3029 S12: 1.3818 S13: 0.9270 REMARK 3 S21: -1.4753 S22: 0.4306 S23: -1.1720 REMARK 3 S31: 0.0685 S32: 1.9211 S33: -0.7335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 62.072 142.375 35.474 REMARK 3 T TENSOR REMARK 3 T11: 0.4516 T22: 0.3368 REMARK 3 T33: 0.2827 T12: -0.0814 REMARK 3 T13: 0.0850 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 9.0639 L22: 19.8592 REMARK 3 L33: 23.7725 L12: -4.4150 REMARK 3 L13: -5.9099 L23: 10.8323 REMARK 3 S TENSOR REMARK 3 S11: 0.5386 S12: -0.9159 S13: 1.0829 REMARK 3 S21: 0.4550 S22: -0.2230 S23: -0.0357 REMARK 3 S31: -0.2189 S32: 0.6499 S33: -0.3156 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 46.635 149.922 42.590 REMARK 3 T TENSOR REMARK 3 T11: 0.7572 T22: 1.2467 REMARK 3 T33: 2.0317 T12: 0.0751 REMARK 3 T13: -0.2458 T23: -0.7695 REMARK 3 L TENSOR REMARK 3 L11: 27.5656 L22: 25.7287 REMARK 3 L33: 8.8060 L12: -0.6116 REMARK 3 L13: 10.8769 L23: 7.0132 REMARK 3 S TENSOR REMARK 3 S11: -2.2951 S12: 1.2947 S13: 2.9161 REMARK 3 S21: -1.1704 S22: -1.4390 S23: 3.4459 REMARK 3 S31: -1.3564 S32: -0.5426 S33: 3.7341 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 64.345 139.028 22.526 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.1414 REMARK 3 T33: 0.2143 T12: -0.0226 REMARK 3 T13: 0.0219 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.6294 L22: 3.5001 REMARK 3 L33: 13.4457 L12: -0.2525 REMARK 3 L13: -5.2465 L23: 1.5132 REMARK 3 S TENSOR REMARK 3 S11: -0.2510 S12: -0.3614 S13: -0.0094 REMARK 3 S21: 0.6064 S22: -0.0842 S23: 0.4194 REMARK 3 S31: 0.8459 S32: 0.1575 S33: 0.3353 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 60.114 134.094 15.057 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.2187 REMARK 3 T33: 0.5011 T12: -0.1466 REMARK 3 T13: -0.0045 T23: -0.0914 REMARK 3 L TENSOR REMARK 3 L11: 3.1005 L22: 5.5368 REMARK 3 L33: 22.1990 L12: -0.8477 REMARK 3 L13: -3.3781 L23: 0.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.3887 S12: 0.2559 S13: -0.0931 REMARK 3 S21: -0.2894 S22: -0.0692 S23: 0.7613 REMARK 3 S31: 1.5856 S32: -1.0896 S33: 0.4578 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 44.846 141.709 42.985 REMARK 3 T TENSOR REMARK 3 T11: 0.9850 T22: 0.9794 REMARK 3 T33: 0.9440 T12: -0.1603 REMARK 3 T13: 0.6913 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 3.7934 L22: 3.6412 REMARK 3 L33: 12.9331 L12: -1.2428 REMARK 3 L13: -0.7603 L23: -3.7543 REMARK 3 S TENSOR REMARK 3 S11: -0.4440 S12: 0.4008 S13: 0.3099 REMARK 3 S21: 0.4966 S22: 0.9278 S23: 0.6832 REMARK 3 S31: -0.2458 S32: -2.3113 S33: -0.4838 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 58.437 133.821 26.031 REMARK 3 T TENSOR REMARK 3 T11: 0.6473 T22: 0.4378 REMARK 3 T33: 0.5061 T12: -0.2601 REMARK 3 T13: 0.2920 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.7839 L22: 9.7270 REMARK 3 L33: 14.7012 L12: 2.8724 REMARK 3 L13: -5.3521 L23: -0.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: 0.1143 S13: 0.3847 REMARK 3 S21: 1.0975 S22: -0.3638 S23: 1.6100 REMARK 3 S31: 0.8480 S32: -0.8494 S33: 0.2591 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): 74.449 144.761 15.506 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.9747 REMARK 3 T33: 0.1930 T12: -0.0233 REMARK 3 T13: 0.0136 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 15.9665 L22: 18.6738 REMARK 3 L33: 17.4690 L12: 2.6758 REMARK 3 L13: 5.4671 L23: 9.7550 REMARK 3 S TENSOR REMARK 3 S11: 0.4145 S12: -1.4880 S13: -0.0185 REMARK 3 S21: 1.5329 S22: 0.0718 S23: -0.8164 REMARK 3 S31: 0.5628 S32: 1.6181 S33: -0.4862 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 68.554 138.589 0.819 REMARK 3 T TENSOR REMARK 3 T11: 0.2636 T22: 0.1809 REMARK 3 T33: 0.2008 T12: 0.0201 REMARK 3 T13: -0.0278 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9560 L22: 1.6848 REMARK 3 L33: 10.3910 L12: -0.3426 REMARK 3 L13: 0.4802 L23: 2.8331 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: 0.2173 S13: -0.0787 REMARK 3 S21: -0.1377 S22: 0.0774 S23: -0.0262 REMARK 3 S31: -0.1622 S32: 0.3127 S33: -0.1943 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 51.119 144.006 27.311 REMARK 3 T TENSOR REMARK 3 T11: 5.1709 T22: 4.3720 REMARK 3 T33: 0.8163 T12: 1.7320 REMARK 3 T13: 1.8356 T23: 0.6595 REMARK 3 L TENSOR REMARK 3 L11: 60.1990 L22: 104.6813 REMARK 3 L33: 14.6649 L12: -47.9338 REMARK 3 L13: -19.7014 L23: -7.6775 REMARK 3 S TENSOR REMARK 3 S11: 3.3843 S12: -0.2890 S13: -1.0114 REMARK 3 S21: 8.3307 S22: -2.4096 S23: 3.7221 REMARK 3 S31: -5.0455 S32: 1.0951 S33: -0.9747 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 62.748 145.847 3.644 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.2842 REMARK 3 T33: 0.2163 T12: 0.0861 REMARK 3 T13: -0.0111 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.1745 L22: 1.4475 REMARK 3 L33: 17.9183 L12: 0.0359 REMARK 3 L13: 4.1648 L23: 1.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.1789 S13: 0.0571 REMARK 3 S21: -0.3606 S22: -0.1236 S23: 0.2578 REMARK 3 S31: -0.8683 S32: 0.0756 S33: 0.1728 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 62.944 135.700 -21.183 REMARK 3 T TENSOR REMARK 3 T11: 0.2972 T22: 0.2780 REMARK 3 T33: 0.2088 T12: 0.0780 REMARK 3 T13: -0.0588 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 8.9548 L22: 11.1450 REMARK 3 L33: 24.0364 L12: -1.0098 REMARK 3 L13: 3.1957 L23: 10.2474 REMARK 3 S TENSOR REMARK 3 S11: 0.4019 S12: 1.0275 S13: -0.4936 REMARK 3 S21: -0.4494 S22: -0.4348 S23: 0.3920 REMARK 3 S31: 0.7545 S32: -0.3650 S33: 0.0329 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 65.705 146.845 4.330 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.2507 REMARK 3 T33: 0.1549 T12: 0.0216 REMARK 3 T13: -0.0578 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.3656 L22: 4.0314 REMARK 3 L33: 13.5121 L12: -1.0993 REMARK 3 L13: -1.4350 L23: 0.9828 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: 0.3107 S13: -0.0918 REMARK 3 S21: -0.2653 S22: -0.2309 S23: 0.1076 REMARK 3 S31: -0.7729 S32: -0.1883 S33: 0.0850 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 123 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 58.089 145.946 3.211 REMARK 3 T TENSOR REMARK 3 T11: 0.6599 T22: 0.5271 REMARK 3 T33: 0.4500 T12: 0.2788 REMARK 3 T13: 0.0588 T23: -0.2188 REMARK 3 L TENSOR REMARK 3 L11: 16.3951 L22: 2.0677 REMARK 3 L33: 41.0776 L12: 1.9605 REMARK 3 L13: 11.0561 L23: -6.2404 REMARK 3 S TENSOR REMARK 3 S11: 0.5383 S12: 0.3477 S13: -0.5646 REMARK 3 S21: -0.0695 S22: 0.1809 S23: -0.1992 REMARK 3 S31: 0.5215 S32: 0.3276 S33: -0.7191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4X1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 55.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG 1000, 12.5% W/V PEG REMARK 280 3350, 12.5% V/V MPD, 0.1 MES/IMIDAZOLE (PH 6.5) AND 0.02M OF REMARK 280 SEVERAL AMINO ACIDS (SODIUM L-GLUTAMATE, DL-ALANINE, GLYCINE, DL- REMARK 280 LYSINE HCL, DL-SERINE), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.50900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.83250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.83250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.25450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.83250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.83250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.76350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.83250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.83250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.25450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.83250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.83250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.76350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.50900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 PRO A 19 REMARK 465 PRO A 20 REMARK 465 PRO A 21 REMARK 465 ILE A 22 REMARK 465 ASN A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 LEU A 27 REMARK 465 PHE A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 73 REMARK 465 GLN A 74 REMARK 465 SER A 75 REMARK 465 THR A 76 REMARK 465 GLU A 77 REMARK 465 SER A 78 REMARK 465 LEU A 79 REMARK 465 HIS A 102 REMARK 465 GLU A 103 REMARK 465 GLU A 104 REMARK 465 VAL A 105 REMARK 465 PRO A 106 REMARK 465 ARG A 107 REMARK 465 GLU A 126 REMARK 465 PRO A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 GLU A 130 REMARK 465 GLY A 131 REMARK 465 LEU A 132 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 PRO B 19 REMARK 465 PRO B 20 REMARK 465 PRO B 21 REMARK 465 ILE B 22 REMARK 465 ASN B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 ALA B 26 REMARK 465 LEU B 27 REMARK 465 PHE B 28 REMARK 465 PRO B 29 REMARK 465 ASN B 70 REMARK 465 THR B 71 REMARK 465 PHE B 72 REMARK 465 PRO B 73 REMARK 465 GLN B 74 REMARK 465 SER B 75 REMARK 465 THR B 76 REMARK 465 GLY B 131 REMARK 465 LEU B 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 30 CG OD1 OD2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 46 11.47 -150.75 REMARK 500 SER A 47 -161.27 -74.76 REMARK 500 LYS B 31 36.20 -90.96 REMARK 500 HIS B 46 136.30 -174.75 REMARK 500 VAL B 105 63.15 78.56 REMARK 500 LYS B 125 139.51 -37.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JPH RELATED DB: PDB REMARK 900 THE RELATED ENTRY IS A PROTEIN THAT IS A PART OF THE SAME PROTEIN REMARK 900 FAMILY. DBREF 4X1J A 17 132 UNP P41271 NBL1_HUMAN 52 167 DBREF 4X1J B 17 132 UNP P41271 NBL1_HUMAN 52 167 SEQRES 1 A 116 ALA ALA PRO PRO PRO ILE ASN LYS LEU ALA LEU PHE PRO SEQRES 2 A 116 ASP LYS SER ALA TRP CYS GLU ALA LYS ASN ILE THR GLN SEQRES 3 A 116 ILE VAL GLY HIS SER GLY CYS GLU ALA LYS SER ILE GLN SEQRES 4 A 116 ASN ARG ALA CYS LEU GLY GLN CYS PHE SER TYR SER VAL SEQRES 5 A 116 PRO ASN THR PHE PRO GLN SER THR GLU SER LEU VAL HIS SEQRES 6 A 116 CYS ASP SER CYS MET PRO ALA GLN SER MET TRP GLU ILE SEQRES 7 A 116 VAL THR LEU GLU CYS PRO GLY HIS GLU GLU VAL PRO ARG SEQRES 8 A 116 VAL ASP LYS LEU VAL GLU LYS ILE LEU HIS CYS SER CYS SEQRES 9 A 116 GLN ALA CYS GLY LYS GLU PRO SER HIS GLU GLY LEU SEQRES 1 B 116 ALA ALA PRO PRO PRO ILE ASN LYS LEU ALA LEU PHE PRO SEQRES 2 B 116 ASP LYS SER ALA TRP CYS GLU ALA LYS ASN ILE THR GLN SEQRES 3 B 116 ILE VAL GLY HIS SER GLY CYS GLU ALA LYS SER ILE GLN SEQRES 4 B 116 ASN ARG ALA CYS LEU GLY GLN CYS PHE SER TYR SER VAL SEQRES 5 B 116 PRO ASN THR PHE PRO GLN SER THR GLU SER LEU VAL HIS SEQRES 6 B 116 CYS ASP SER CYS MET PRO ALA GLN SER MET TRP GLU ILE SEQRES 7 B 116 VAL THR LEU GLU CYS PRO GLY HIS GLU GLU VAL PRO ARG SEQRES 8 B 116 VAL ASP LYS LEU VAL GLU LYS ILE LEU HIS CYS SER CYS SEQRES 9 B 116 GLN ALA CYS GLY LYS GLU PRO SER HIS GLU GLY LEU HET NAG A 501 14 HET NAG B 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 HOH *5(H2 O) SHEET 1 AA1 5 TRP A 34 ILE A 43 0 SHEET 2 AA1 5 SER A 53 SER A 67 -1 O ASN A 56 N ILE A 40 SHEET 3 AA1 5 LYS B 52 SER B 67 -1 O SER B 65 N GLY A 61 SHEET 4 AA1 5 HIS A 81 THR A 96 0 SHEET 5 AA1 5 ASP A 109 ALA A 122 -1 O LYS A 114 N MET A 91 SHEET 1 AA2 6 THR A 71 PHE A 72 0 SHEET 2 AA2 6 ARG B 107 ALA B 122 -1 O LEU B 111 N PHE A 72 SHEET 3 AA2 6 VAL B 80 GLU B 98 -1 N MET B 91 O LYS B 114 SHEET 4 AA2 6 LYS B 52 SER B 67 -1 N TYR B 66 O HIS B 81 SHEET 5 AA2 6 SER A 53 SER A 67 -1 N GLY A 61 O SER B 65 SHEET 6 AA2 6 TRP B 34 VAL B 44 0 SSBOND 1 CYS A 35 CYS A 85 1555 1555 1.99 SSBOND 2 CYS A 49 CYS A 99 1555 1555 2.03 SSBOND 3 CYS A 59 CYS A 118 1555 1555 2.05 SSBOND 4 CYS A 63 CYS A 120 1555 1555 2.05 SSBOND 5 CYS A 82 CYS A 123 1555 1555 2.07 SSBOND 6 CYS B 35 CYS B 85 1555 1555 2.01 SSBOND 7 CYS B 49 CYS B 99 1555 1555 2.06 SSBOND 8 CYS B 59 CYS B 118 1555 1555 2.01 SSBOND 9 CYS B 63 CYS B 120 1555 1555 2.08 SSBOND 10 CYS B 82 CYS B 123 1555 1555 2.03 LINK ND2 ASN A 39 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN B 39 C1 NAG B 501 1555 1555 1.44 CISPEP 1 GLY A 45 HIS A 46 0 -6.12 CISPEP 2 CYS A 99 PRO A 100 0 -2.67 CRYST1 59.665 59.665 145.018 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006896 0.00000