HEADER TRANSFERASE 26-NOV-14 4X2B TITLE K20A RNA DEPENDENT RNA POLYMERASE MUTANT FROM FOOT-AND-MOUTH DISEASE TITLE 2 VIRUS COMPLEXED WITH AN RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1858-2327; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THIS PROTEIN IS THE MUTANT K20A; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA TEMPLATE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RNA PRIMER; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: FMDV; SOURCE 4 ORGANISM_TAXID: 12120; SOURCE 5 STRAIN: ISOLATE -/SPAIN/S8C1SANTAPAU/1970 SEROTYPE C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS NUCLEAR SIGNAL LOCALIZATION, PICORNAVIRUS, FOOT-AND-MOUTH DISEASE, KEYWDS 2 VIRUS, RNA DEPENDENT RNA POLYMERASE, 3D POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VERDAGUER,C.FERRER-ORTA REVDAT 4 10-JAN-24 4X2B 1 REMARK REVDAT 3 17-JUN-15 4X2B 1 JRNL REVDAT 2 13-MAY-15 4X2B 1 JRNL REVDAT 1 06-MAY-15 4X2B 0 JRNL AUTH C.FERRER-ORTA,I.DE LA HIGUERA,F.CARIDI,M.T.SANCHEZ-APARICIO, JRNL AUTH 2 E.MORENO,C.PERALES,K.SINGH,S.G.SARAFIANOS,F.SOBRINO, JRNL AUTH 3 E.DOMINGO,N.VERDAGUER JRNL TITL MULTIFUNCTIONALITY OF A PICORNAVIRUS POLYMERASE DOMAIN: JRNL TITL 2 NUCLEAR LOCALIZATION SIGNAL AND NUCLEOTIDE RECOGNITION. JRNL REF J.VIROL. V. 89 6848 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25903341 JRNL DOI 10.1128/JVI.03283-14 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3752 REMARK 3 NUCLEIC ACID ATOMS : 280 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.456 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.398 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4155 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3739 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5690 ; 0.763 ; 1.889 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8606 ; 0.673 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 4.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;31.288 ;23.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;13.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;11.406 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4540 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 991 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 0.786 ; 4.828 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1906 ; 0.784 ; 4.828 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2382 ; 1.419 ; 7.242 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2383 ; 1.419 ; 7.243 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2248 ; 0.684 ; 5.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2247 ; 0.684 ; 5.535 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3308 ; 1.189 ; 8.332 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4684 ; 4.519 ;43.929 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4683 ; 4.517 ;43.944 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1297 25.7938 30.9347 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.2195 REMARK 3 T33: 0.0260 T12: -0.0859 REMARK 3 T13: 0.0349 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 3.4543 L22: 0.9774 REMARK 3 L33: 1.0550 L12: -1.4005 REMARK 3 L13: -0.1165 L23: 0.2002 REMARK 3 S TENSOR REMARK 3 S11: 0.2000 S12: 0.1623 S13: 0.0202 REMARK 3 S21: -0.3417 S22: -0.0874 S23: -0.0844 REMARK 3 S31: -0.1248 S32: 0.0638 S33: -0.1126 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 103 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2177 REMARK 3 T33: 0.2177 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 511 D 514 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2177 REMARK 3 T33: 0.2177 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 1 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2177 REMARK 3 T33: 0.2177 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4X2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979469 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 47.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC RIGID BODY REFINEMENT REMARK 200 STARTING MODEL: 1U09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M MES PH 6.0, 0.1 M REMARK 280 MG(COO3)2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.75750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.11100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.11100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.37875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.11100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.11100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.13625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.11100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.11100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.37875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.11100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.11100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.13625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.75750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 11 97.51 -63.02 REMARK 500 ARG A 17 52.77 -116.25 REMARK 500 LYS A 42 41.32 -97.20 REMARK 500 PRO A 120 37.11 -95.77 REMARK 500 PHE A 261 61.04 -105.44 REMARK 500 GLU A 286 -121.35 59.85 REMARK 500 SER A 301 -64.29 165.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD1 REMARK 620 2 ASP A 240 OD1 90.5 REMARK 620 3 ASP A 339 OD1 134.6 129.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 1WNE CONTAINS THE SAME PROTEIN BUT THE WILD TYPE AND COMPLEXED WITH REMARK 900 RNA REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 1U09 CONTAINS THE SAME PROTEIN BUT THE WILD TYPE DBREF 4X2B A 1 470 UNP P03311 POLG_FMDVS 1858 2327 DBREF 4X2B B 903 909 PDB 4X2B 4X2B 903 909 DBREF 4X2B C 915 920 PDB 4X2B 4X2B 915 920 SEQADV 4X2B ALA A 20 UNP P03311 LYS 1877 ENGINEERED MUTATION SEQADV 4X2B ALA A 471 UNP P03311 EXPRESSION TAG SEQADV 4X2B ALA A 472 UNP P03311 EXPRESSION TAG SEQADV 4X2B ALA A 473 UNP P03311 EXPRESSION TAG SEQADV 4X2B LEU A 474 UNP P03311 EXPRESSION TAG SEQADV 4X2B GLU A 475 UNP P03311 EXPRESSION TAG SEQADV 4X2B HIS A 476 UNP P03311 EXPRESSION TAG SEQADV 4X2B HIS A 477 UNP P03311 EXPRESSION TAG SEQADV 4X2B HIS A 478 UNP P03311 EXPRESSION TAG SEQADV 4X2B HIS A 479 UNP P03311 EXPRESSION TAG SEQADV 4X2B HIS A 480 UNP P03311 EXPRESSION TAG SEQADV 4X2B HIS A 481 UNP P03311 EXPRESSION TAG SEQRES 1 A 481 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 481 HIS VAL MET ARG LYS THR ALA LEU ALA PRO THR VAL ALA SEQRES 3 A 481 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 481 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 481 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 481 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 481 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 481 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 481 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 481 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 481 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 481 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 481 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 481 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 481 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 481 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 481 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 481 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 481 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 481 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 481 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 481 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 481 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 481 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 481 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 481 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 481 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 481 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 481 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 481 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 481 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 481 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 481 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 481 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 481 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 481 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 481 ASP ALA ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 7 A U G G G C C SEQRES 1 C 6 G G G C C C HET MG A 501 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *14(H2 O) HELIX 1 AA1 THR A 24 ASN A 31 1 8 HELIX 2 AA2 VAL A 51 PHE A 57 1 7 HELIX 3 AA3 SER A 58 HIS A 60 5 3 HELIX 4 AA4 SER A 67 GLY A 90 1 24 HELIX 5 AA5 SER A 97 GLY A 104 1 8 HELIX 6 AA6 PRO A 120 GLY A 125 1 6 HELIX 7 AA7 ARG A 127 LEU A 131 1 5 HELIX 8 AA8 GLY A 140 ARG A 153 1 14 HELIX 9 AA9 MET A 170 GLY A 176 1 7 HELIX 10 AB1 PRO A 185 ASN A 206 1 22 HELIX 11 AB2 ASN A 218 GLN A 232 1 15 HELIX 12 AB3 CYS A 249 PHE A 261 1 13 HELIX 13 AB4 ARG A 262 GLY A 266 5 5 HELIX 14 AB5 PRO A 269 THR A 277 1 9 HELIX 15 AB6 ALA A 302 TYR A 323 1 22 HELIX 16 AB7 GLU A 327 TYR A 331 5 5 HELIX 17 AB8 ASP A 349 SER A 359 1 11 HELIX 18 AB9 ALA A 404 SER A 413 1 10 HELIX 19 AC1 THR A 419 VAL A 432 1 14 HELIX 20 AC2 GLY A 435 PHE A 443 1 9 HELIX 21 AC3 SER A 454 CYS A 467 1 14 HELIX 22 AC4 CYS A 467 LEU A 474 1 8 HELIX 23 AC5 GLU A 475 HIS A 477 5 3 SHEET 1 AA1 5 LEU A 2 ASP A 8 0 SHEET 2 AA1 5 LYS A 288 GLU A 293 -1 O THR A 291 N ASP A 5 SHEET 3 AA1 5 ASN A 280 TYR A 285 -1 N THR A 281 O VAL A 292 SHEET 4 AA1 5 CYS A 159 LEU A 163 1 N CYS A 159 O GLU A 282 SHEET 5 AA1 5 ILE A 180 VAL A 183 -1 O VAL A 183 N GLN A 160 SHEET 1 AA2 2 LEU A 21 PRO A 23 0 SHEET 2 AA2 2 PHE A 414 ARG A 416 -1 O ALA A 415 N ALA A 22 SHEET 1 AA3 2 PHE A 34 PRO A 36 0 SHEET 2 AA3 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 AA4 2 ILE A 132 ASP A 133 0 SHEET 2 AA4 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 AA5 4 THR A 332 TYR A 336 0 SHEET 2 AA5 4 ASP A 339 SER A 344 -1 O ALA A 343 N THR A 332 SHEET 3 AA5 4 ASN A 235 TYR A 241 -1 N TRP A 237 O VAL A 342 SHEET 4 AA5 4 ILE A 364 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 AA6 3 THR A 384 PHE A 385 0 SHEET 2 AA6 3 ARG A 388 MET A 392 -1 O ARG A 388 N PHE A 385 SHEET 3 AA6 3 TYR A 399 VAL A 402 -1 O VAL A 402 N HIS A 389 LINK OD1 ASP A 238 MG MG A 501 1555 1555 2.47 LINK OD1 ASP A 240 MG MG A 501 1555 1555 2.85 LINK OD1 ASP A 339 MG MG A 501 1555 1555 2.79 CISPEP 1 LEU A 119 PRO A 120 0 -0.31 SITE 1 AC1 5 ASP A 238 VAL A 239 ASP A 240 ASP A 339 SITE 2 AC1 5 THR A 384 CRYST1 94.222 94.222 121.515 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008229 0.00000