HEADER ISOMERASE 26-NOV-14 4X2P TITLE P. PUTIDA MANDELATE RACEMASE IN COMPLEX WITH 3-HYDROXYPYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MR; COMPND 5 EC: 5.1.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET52B KEYWDS RACEMASE, ENOLASE SUPERFAMILY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.N.WYATT,M.ST.MAURICE REVDAT 5 31-JAN-18 4X2P 1 SOURCE REVDAT 4 24-JAN-18 4X2P 1 JRNL REVDAT 3 06-DEC-17 4X2P 1 AUTHOR JRNL REMARK REVDAT 2 13-JAN-16 4X2P 1 AUTHOR REVDAT 1 14-OCT-15 4X2P 0 JRNL AUTH M.NAGAR,B.N.WYATT,M.ST.MAURICE,S.L.BEARNE JRNL TITL INACTIVATION OF MANDELATE RACEMASE BY 3-HYDROXYPYRUVATE JRNL TITL 2 REVEALS A POTENTIAL MECHANISTIC LINK BETWEEN ENZYME JRNL TITL 3 SUPERFAMILIES. JRNL REF BIOCHEMISTRY V. 54 2747 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25844917 JRNL DOI 10.1021/ACS.BIOCHEM.5B00221 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 46554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2838 ; 0.036 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3886 ; 3.095 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 6.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;38.444 ;23.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;14.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.258 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2145 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4X2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FOR THE CRYSTALS GROWN IN THE PRESENCE REMARK 280 OF FRESHLY MADE 3-HP, THE BATCH RESERVOIR CONSISTED OF 280 MM REMARK 280 KCL, 46% PEP 426, AND 140 MM SODIUM ACETATE (PH 4.5). THE REMARK 280 PROTEIN SOLUTION CONSISTED OF 6.0 MG/ML MR PURIFIED AS DESCRIBED REMARK 280 ABOVE, 50MM HEPES BUFFER (PH 7.5), AND 3.3 MM MGCL2. 20MM OF 3- REMARK 280 HP WAS ADDED TO THE PROTEIN SOLUTION BEFORE BEING MIXED WITH THE REMARK 280 BATCH RESERVOIR. THE PROTEIN SOLUTION AND RESERVOIR SOLUTION REMARK 280 WERE GENTLY MIXED IN A 1:1 RATIO. THE MIXTURE WAS PIPETTED INTO REMARK 280 A LIGHTLY GREASED WELL TO PREVENT THE CRYSTALS FROM ADHERING TO REMARK 280 THE WELL BOTTOM AND SEALED WITH A GLASS COVERSLIP LINED WITH REMARK 280 MINERAL OIL. THE SPONTANEOUS CRYSTALS GREW FOR 17 HOURS, REMARK 280 RESULTING IN HEXAGONAL PRISM AND OCTAHEDRAL SHAPED CRYSTALS, AND REMARK 280 WERE LOOPED DIRECTLY FROM THE WELLS TO BE FLASH-COOLED IN LIQUID REMARK 280 NITROGEN FOR STORAGE., BATCH MODE, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.93950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.65050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 61.93950 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 52.65050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.93950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 52.65050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 61.93950 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 52.65050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.93950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 52.65050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.93950 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 52.65050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 61.93950 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 52.65050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.93950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.93950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 52.65050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 86720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -105.30100 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -105.30100 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 -105.30100 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 -105.30100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 562 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 ALA A -22 REMARK 465 SER A -21 REMARK 465 TRP A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 GLN A -16 REMARK 465 PHE A -15 REMARK 465 GLU A -14 REMARK 465 LYS A -13 REMARK 465 GLY A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 TYR A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 402 O HOH A 750 1.67 REMARK 500 CD2 HIS A 227 O HOH A 508 1.93 REMARK 500 OE2 GLU A 150 O HOH A 791 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 215 CA GLU A 215 C -0.182 REMARK 500 GLY A 216 C GLY A 216 O 0.110 REMARK 500 ARG A 234 CZ ARG A 234 NH1 0.116 REMARK 500 GLU A 254 CD GLU A 254 OE1 0.075 REMARK 500 GLU A 254 CD GLU A 254 OE2 0.104 REMARK 500 GLY A 275 N GLY A 275 CA 0.096 REMARK 500 ILE A 326 CB ILE A 326 CG1 -0.191 REMARK 500 GLU A 327 CG GLU A 327 CD 0.095 REMARK 500 GLY A 346 N GLY A 346 CA 0.091 REMARK 500 TRP A 349 CE3 TRP A 349 CZ3 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 52 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ALA A 79 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU A 99 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LYS A 125 CD - CE - NZ ANGL. DEV. = -20.5 DEGREES REMARK 500 ASP A 143 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 LYS A 146 CD - CE - NZ ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 175 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LYS A 207 CD - CE - NZ ANGL. DEV. = -14.4 DEGREES REMARK 500 GLU A 221 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TYR A 229 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 229 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU A 254 CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 LYS A 257 CD - CE - NZ ANGL. DEV. = -14.5 DEGREES REMARK 500 ILE A 326 CB - CG1 - CD1 ANGL. DEV. = -27.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 54 -55.78 74.81 REMARK 500 ALA A 79 92.98 -40.61 REMARK 500 HIS A 140 -166.37 -108.59 REMARK 500 SER A 141 -158.98 -128.33 REMARK 500 ASP A 189 59.94 -103.04 REMARK 500 GLU A 222 69.65 28.02 REMARK 500 LEU A 298 -170.87 58.26 REMARK 500 HIS A 314 -81.20 -127.03 REMARK 500 LEU A 319 106.16 -160.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 3 VAL A 4 148.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 195 OD2 REMARK 620 2 GLU A 221 OE2 91.4 REMARK 620 3 GLU A 247 OE1 173.4 86.1 REMARK 620 4 3PY A 401 O2 89.8 91.8 96.3 REMARK 620 5 3PY A 401 O2 88.6 92.8 97.6 1.6 REMARK 620 6 HOH A 726 O 84.7 108.4 90.4 159.1 157.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 DBREF 4X2P A 1 359 UNP P11444 MANR_PSEPU 1 359 SEQADV 4X2P MET A -23 UNP P11444 INITIATING METHIONINE SEQADV 4X2P ALA A -22 UNP P11444 EXPRESSION TAG SEQADV 4X2P SER A -21 UNP P11444 EXPRESSION TAG SEQADV 4X2P TRP A -20 UNP P11444 EXPRESSION TAG SEQADV 4X2P SER A -19 UNP P11444 EXPRESSION TAG SEQADV 4X2P HIS A -18 UNP P11444 EXPRESSION TAG SEQADV 4X2P PRO A -17 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLN A -16 UNP P11444 EXPRESSION TAG SEQADV 4X2P PHE A -15 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLU A -14 UNP P11444 EXPRESSION TAG SEQADV 4X2P LYS A -13 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLY A -12 UNP P11444 EXPRESSION TAG SEQADV 4X2P ALA A -11 UNP P11444 EXPRESSION TAG SEQADV 4X2P LEU A -10 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLU A -9 UNP P11444 EXPRESSION TAG SEQADV 4X2P VAL A -8 UNP P11444 EXPRESSION TAG SEQADV 4X2P LEU A -7 UNP P11444 EXPRESSION TAG SEQADV 4X2P PHE A -6 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLN A -5 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLY A -4 UNP P11444 EXPRESSION TAG SEQADV 4X2P PRO A -3 UNP P11444 EXPRESSION TAG SEQADV 4X2P GLY A -2 UNP P11444 EXPRESSION TAG SEQADV 4X2P TYR A -1 UNP P11444 EXPRESSION TAG SEQADV 4X2P HIS A 0 UNP P11444 EXPRESSION TAG SEQRES 1 A 383 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 383 LEU GLU VAL LEU PHE GLN GLY PRO GLY TYR HIS MET SER SEQRES 3 A 383 GLU VAL LEU ILE THR GLY LEU ARG THR ARG ALA VAL ASN SEQRES 4 A 383 VAL PRO LEU ALA TYR PRO VAL HIS THR ALA VAL GLY THR SEQRES 5 A 383 VAL GLY THR ALA PRO LEU VAL LEU ILE ASP LEU ALA THR SEQRES 6 A 383 SER ALA GLY VAL VAL GLY HIS SER TYR LEU PHE ALA TYR SEQRES 7 A 383 THR PRO VAL ALA LEU LYS SER LEU LYS GLN LEU LEU ASP SEQRES 8 A 383 ASP MET ALA ALA MET ILE VAL ASN GLU PRO LEU ALA PRO SEQRES 9 A 383 VAL SER LEU GLU ALA MET LEU ALA LYS ARG PHE CYS LEU SEQRES 10 A 383 ALA GLY TYR THR GLY LEU ILE ARG MET ALA ALA ALA GLY SEQRES 11 A 383 ILE ASP MET ALA ALA TRP ASP ALA LEU GLY LYS VAL HIS SEQRES 12 A 383 GLU THR PRO LEU VAL LYS LEU LEU GLY ALA ASN ALA ARG SEQRES 13 A 383 PRO VAL GLN ALA TYR ASP SER HIS SER LEU ASP GLY VAL SEQRES 14 A 383 LYS LEU ALA THR GLU ARG ALA VAL THR ALA ALA GLU LEU SEQRES 15 A 383 GLY PHE ARG ALA VAL LYS THR LYS ILE GLY TYR PRO ALA SEQRES 16 A 383 LEU ASP GLN ASP LEU ALA VAL VAL ARG SER ILE ARG GLN SEQRES 17 A 383 ALA VAL GLY ASP ASP PHE GLY ILE MET VAL ASP TYR ASN SEQRES 18 A 383 GLN SER LEU ASP VAL PRO ALA ALA ILE LYS ARG SER GLN SEQRES 19 A 383 ALA LEU GLN GLN GLU GLY VAL THR TRP ILE GLU GLU PRO SEQRES 20 A 383 THR LEU GLN HIS ASP TYR GLU GLY HIS GLN ARG ILE GLN SEQRES 21 A 383 SER LYS LEU ASN VAL PRO VAL GLN MET GLY GLU ASN TRP SEQRES 22 A 383 LEU GLY PRO GLU GLU MET PHE LYS ALA LEU SER ILE GLY SEQRES 23 A 383 ALA CYS ARG LEU ALA MET PRO ASP ALA MET LYS ILE GLY SEQRES 24 A 383 GLY VAL THR GLY TRP ILE ARG ALA SER ALA LEU ALA GLN SEQRES 25 A 383 GLN PHE GLY ILE PRO MET SER SER HIS LEU PHE GLN GLU SEQRES 26 A 383 ILE SER ALA HIS LEU LEU ALA ALA THR PRO THR ALA HIS SEQRES 27 A 383 TRP LEU GLU ARG LEU ASP LEU ALA GLY SER VAL ILE GLU SEQRES 28 A 383 PRO THR LEU THR PHE GLU GLY GLY ASN ALA VAL ILE PRO SEQRES 29 A 383 ASP LEU PRO GLY VAL GLY ILE ILE TRP ARG GLU LYS GLU SEQRES 30 A 383 ILE GLY LYS TYR LEU VAL HET 3PY A 401 12 HET MG A 402 1 HETNAM 3PY 3-HYDROXYPYRUVIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 3PY C3 H4 O4 FORMUL 3 MG MG 2+ FORMUL 4 HOH *297(H2 O) HELIX 1 AA1 THR A 55 VAL A 57 5 3 HELIX 2 AA2 ALA A 58 VAL A 74 1 17 HELIX 3 AA3 ALA A 79 PHE A 91 1 13 HELIX 4 AA4 THR A 97 HIS A 119 1 23 HELIX 5 AA5 PRO A 122 LEU A 127 1 6 HELIX 6 AA6 ASP A 143 LEU A 158 1 16 HELIX 7 AA7 ALA A 171 GLY A 187 1 17 HELIX 8 AA8 ASP A 201 GLY A 216 1 16 HELIX 9 AA9 ASP A 228 LYS A 238 1 11 HELIX 10 AB1 GLY A 251 ILE A 261 1 11 HELIX 11 AB2 GLY A 275 GLY A 291 1 17 HELIX 12 AB3 PHE A 299 ALA A 309 1 11 HELIX 13 AB4 ARG A 350 LEU A 358 1 9 SHEET 1 AA1 3 ILE A 6 HIS A 23 0 SHEET 2 AA1 3 THR A 28 THR A 41 -1 O LEU A 36 N ARG A 12 SHEET 3 AA1 3 VAL A 46 PHE A 52 -1 O SER A 49 N ILE A 37 SHEET 1 AA2 7 LEU A 266 ALA A 267 0 SHEET 2 AA2 7 VAL A 243 MET A 245 1 N VAL A 243 O LEU A 266 SHEET 3 AA2 7 ILE A 220 GLU A 221 1 N ILE A 220 O GLN A 244 SHEET 4 AA2 7 GLY A 191 ASP A 195 1 N VAL A 194 O GLU A 221 SHEET 5 AA2 7 ALA A 162 LYS A 166 1 N VAL A 163 O MET A 193 SHEET 6 AA2 7 VAL A 134 SER A 139 1 N ASP A 138 O LYS A 164 SHEET 7 AA2 7 LEU A 316 ARG A 318 1 O ARG A 318 N TYR A 137 SHEET 1 AA3 8 LEU A 266 ALA A 267 0 SHEET 2 AA3 8 VAL A 243 MET A 245 1 N VAL A 243 O LEU A 266 SHEET 3 AA3 8 ILE A 220 GLU A 221 1 N ILE A 220 O GLN A 244 SHEET 4 AA3 8 GLY A 191 ASP A 195 1 N VAL A 194 O GLU A 221 SHEET 5 AA3 8 ALA A 162 LYS A 166 1 N VAL A 163 O MET A 193 SHEET 6 AA3 8 VAL A 134 SER A 139 1 N ASP A 138 O LYS A 164 SHEET 7 AA3 8 ASN A 336 VAL A 338 -1 O ALA A 337 N VAL A 134 SHEET 8 AA3 8 THR A 331 GLU A 333 -1 N THR A 331 O VAL A 338 LINK NZ LYS A 166 C2 A3PY A 401 1555 1555 1.50 LINK NZ LYS A 166 C2 B3PY A 401 1555 1555 1.35 LINK OD2 ASP A 195 MG MG A 402 1555 1555 2.12 LINK OE2 GLU A 221 MG MG A 402 1555 1555 1.94 LINK OE1 GLU A 247 MG MG A 402 1555 1555 2.06 LINK O2 A3PY A 401 MG MG A 402 1555 1555 2.44 LINK O2 B3PY A 401 MG MG A 402 1555 1555 2.44 LINK MG MG A 402 O HOH A 726 1555 1555 2.06 SITE 1 AC1 13 SER A 139 LYS A 164 LYS A 166 ASP A 195 SITE 2 AC1 13 GLU A 221 GLU A 247 HIS A 297 GLU A 317 SITE 3 AC1 13 LEU A 319 MG A 402 HOH A 548 HOH A 626 SITE 4 AC1 13 HOH A 750 SITE 1 AC2 6 ASP A 195 GLU A 221 GLU A 247 3PY A 401 SITE 2 AC2 6 HOH A 726 HOH A 750 CRYST1 123.879 123.879 105.301 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009497 0.00000