HEADER ELECTRON TRANSPORT 27-NOV-14 4X33 TITLE STRUCTURE OF THE ELONGATOR COFACTOR COMPLEX KTI11/KTI13 AT 1.45A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHTHAMIDE BIOSYNTHESIS PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KLUYVEROMYCES LACTIS TOXIN-INSENSITIVE PROTEIN 11; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN ATS1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ALPHA-TUBULIN SUPPRESSOR 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: KTI11, DPH3, YBL071W-A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: CODONPLUS(DES)-RIL; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 GENE: ATS1, YAL020C, FUN28, YAL006; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: CODONPLUS(DES)-RIL KEYWDS ELECTRON TRANSFER, TRNA MODIFICATION, COMPLEX, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR O.KOLAJ-ROBIN,A.G.MCEWEN,J.CAVARELLI,B.SERAPHIN REVDAT 3 11-MAR-15 4X33 1 JRNL REVDAT 2 04-FEB-15 4X33 1 JRNL REVDAT 1 21-JAN-15 4X33 0 JRNL AUTH O.KOLAJ-ROBIN,A.G.MCEWEN,J.CAVARELLI,B.SERAPHIN JRNL TITL STRUCTURE OF THE ELONGATOR COFACTOR COMPLEX KTI11/KTI13 JRNL TITL 2 PROVIDES INSIGHT INTO THE ROLE OF KTI13 IN JRNL TITL 3 ELONGATOR-DEPENDENT TRNA MODIFICATION. JRNL REF FEBS J. V. 282 819 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25604895 JRNL DOI 10.1111/FEBS.13199 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3209 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4649 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2322 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4445 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2572 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.39 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 204 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 549 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02250 REMARK 3 B22 (A**2) : 0.33530 REMARK 3 B33 (A**2) : -0.35780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.169 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.063 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.070 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.062 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6563 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11843 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1433 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 92 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1057 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6556 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 418 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7602 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.27 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|101 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.0670 39.4425 46.4033 REMARK 3 T TENSOR REMARK 3 T11: -0.0054 T22: -0.0191 REMARK 3 T33: -0.0388 T12: 0.0035 REMARK 3 T13: 0.0679 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 2.3019 L22: 0.8267 REMARK 3 L33: 1.4351 L12: 1.2047 REMARK 3 L13: -1.1141 L23: -0.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.2276 S13: -0.0290 REMARK 3 S21: -0.2159 S22: 0.0957 S23: -0.0577 REMARK 3 S31: 0.0519 S32: 0.0510 S33: -0.0519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|2 - B|31 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.6343 22.3665 54.9630 REMARK 3 T TENSOR REMARK 3 T11: -0.0012 T22: -0.0112 REMARK 3 T33: -0.0268 T12: -0.0410 REMARK 3 T13: -0.0337 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.5792 L22: 1.5275 REMARK 3 L33: 1.4787 L12: -0.5868 REMARK 3 L13: 0.1934 L23: 0.3210 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: 0.1491 S13: -0.2024 REMARK 3 S21: -0.2657 S22: 0.0193 S23: 0.2642 REMARK 3 S31: 0.1935 S32: -0.2325 S33: -0.0863 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|35 - B|88 } REMARK 3 ORIGIN FOR THE GROUP (A): 3.7389 13.9311 57.2470 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: -0.0744 REMARK 3 T33: -0.0360 T12: -0.0113 REMARK 3 T13: -0.0213 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.6789 L22: 2.1389 REMARK 3 L33: 0.7282 L12: -0.0300 REMARK 3 L13: 0.3482 L23: -0.7188 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.0934 S13: -0.1942 REMARK 3 S21: -0.3380 S22: 0.0698 S23: 0.1257 REMARK 3 S31: 0.2727 S32: -0.0356 S33: -0.1138 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|89 - B|129 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.0551 13.2557 61.8866 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: -0.0317 REMARK 3 T33: -0.0088 T12: 0.0366 REMARK 3 T13: 0.0213 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.5405 L22: 1.3932 REMARK 3 L33: 1.2569 L12: -0.2435 REMARK 3 L13: 0.4252 L23: -0.6195 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0891 S13: -0.0722 REMARK 3 S21: -0.2170 S22: -0.0669 S23: -0.1140 REMARK 3 S31: 0.2520 S32: 0.1846 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|130 - B|179 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.1911 24.0584 67.0487 REMARK 3 T TENSOR REMARK 3 T11: -0.0617 T22: 0.0026 REMARK 3 T33: 0.0035 T12: 0.0148 REMARK 3 T13: 0.0016 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.8552 L22: 1.0782 REMARK 3 L33: 1.5406 L12: 0.1136 REMARK 3 L13: 0.1238 L23: -0.6462 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0120 S13: 0.0603 REMARK 3 S21: -0.0149 S22: -0.1007 S23: -0.1470 REMARK 3 S31: 0.0647 S32: 0.2361 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|180 - B|219 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.0761 33.7410 73.6802 REMARK 3 T TENSOR REMARK 3 T11: -0.0183 T22: -0.0258 REMARK 3 T33: 0.0182 T12: -0.0232 REMARK 3 T13: -0.0080 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.2358 L22: 1.3545 REMARK 3 L33: 1.6062 L12: -0.5490 REMARK 3 L13: 0.1312 L23: -0.8497 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0211 S13: 0.1396 REMARK 3 S21: 0.1418 S22: -0.0514 S23: -0.1734 REMARK 3 S31: -0.0961 S32: 0.1710 S33: 0.0586 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|220 - B|260 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.0856 39.0877 73.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.0003 T22: -0.0480 REMARK 3 T33: 0.0018 T12: -0.0040 REMARK 3 T13: 0.0168 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2893 L22: 0.5863 REMARK 3 L33: 1.7220 L12: 0.1384 REMARK 3 L13: -0.2537 L23: -0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: -0.1223 S13: 0.1313 REMARK 3 S21: 0.0959 S22: -0.0197 S23: 0.0215 REMARK 3 S31: -0.2183 S32: 0.0568 S33: -0.0565 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|261 - B|317 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.8022 34.5268 66.3286 REMARK 3 T TENSOR REMARK 3 T11: -0.0500 T22: -0.0212 REMARK 3 T33: -0.0025 T12: 0.0087 REMARK 3 T13: 0.0155 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.3262 L22: 0.7060 REMARK 3 L33: 2.2074 L12: 0.2749 REMARK 3 L13: -0.2728 L23: -0.1843 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.0135 S13: 0.0564 REMARK 3 S21: -0.0200 S22: 0.0059 S23: 0.1036 REMARK 3 S31: -0.0275 S32: -0.2157 S33: -0.0610 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|318 - B|333 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.2809 24.7027 65.6657 REMARK 3 T TENSOR REMARK 3 T11: -0.0106 T22: 0.0140 REMARK 3 T33: -0.0156 T12: -0.0127 REMARK 3 T13: 0.0016 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.2487 L22: 0.8149 REMARK 3 L33: 1.0948 L12: -0.1560 REMARK 3 L13: -0.7222 L23: 0.5730 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.1082 S13: -0.0088 REMARK 3 S21: 0.0308 S22: 0.0739 S23: 0.0604 REMARK 3 S31: 0.2051 S32: -0.0085 S33: -0.0774 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 2.14500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 3350, 0.2 MGCL2 AND 0.1M REMARK 280 TRIS PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.89500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.50450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.89500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.50450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.76500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.89500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.50450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.76500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.89500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.50450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 215 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 595 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 MET B 1 REMARK 465 GLY B 32 REMARK 465 ASP B 33 REMARK 465 ASP B 34 REMARK 465 GLU B 281 REMARK 465 GLY B 282 REMARK 465 LYS B 283 REMARK 465 SER B 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 119 O HOH B 897 1.73 REMARK 500 HH22 ARG B 28 O HOH B 968 1.83 REMARK 500 HG1 THR B 52 OD1 ASP B 54 1.83 REMARK 500 HH12 ARG B 148 O HOH B 786 1.85 REMARK 500 HH21 ARG B 39 O ASN B 53 1.87 REMARK 500 HG1 THR B 52 OD1 ASP B 54 1.91 REMARK 500 HD22 ASN B 56 O HOH B 873 1.95 REMARK 500 H THR B 52 O ASN B 56 1.95 REMARK 500 OD1 ASP B 54 H ASN B 56 1.95 REMARK 500 HH12 ARG B 220 O HOH B 595 1.97 REMARK 500 HZ1 LYS B 40 O HOH B 937 1.98 REMARK 500 HE ARG B 148 OH TYR B 150 1.99 REMARK 500 H THR B 52 O ASN B 56 2.00 REMARK 500 HG SER A 51 O HOH B 858 2.01 REMARK 500 HH12 ARG B 220 O HOH B 595 2.01 REMARK 500 HE ARG B 148 O HOH B 786 2.02 REMARK 500 O THR B 52 H GLY B 55 2.05 REMARK 500 OG1 THR B 52 H ASN B 56 2.10 REMARK 500 HH11 ARG B 200 ND1 HIS B 221 2.10 REMARK 500 HH21 ARG B 148 O HOH B 786 2.13 REMARK 500 H VAL B 180 O HOH B 631 2.15 REMARK 500 HH12 ARG B 28 O HOH B 968 2.16 REMARK 500 O THR B 52 H GLY B 55 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 10 25.88 -149.46 REMARK 500 VAL B 30 75.91 -114.96 REMARK 500 ASN B 46 20.99 -144.33 REMARK 500 SER B 127 47.66 -98.44 REMARK 500 PHE B 138 -103.93 65.84 REMARK 500 SER B 179 -88.88 -169.57 REMARK 500 SER B 179 -67.64 -163.05 REMARK 500 ASP B 190 28.13 -154.57 REMARK 500 GLU B 271 27.85 -141.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 CYS A 27 SG 109.4 REMARK 620 3 CYS A 47 SG 112.1 106.9 REMARK 620 4 CYS A 50 SG 99.9 116.6 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 647 O REMARK 620 2 HOH B 658 O 96.4 REMARK 620 3 HOH B 568 O 156.4 106.8 REMARK 620 4 HOH B 672 O 94.2 109.9 82.1 REMARK 620 5 HOH B 529 O 93.1 80.3 86.8 166.7 REMARK 620 6 HOH B 617 O 89.4 166.1 67.1 82.1 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DXE B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 407 DBREF 4X33 A 1 57 UNP Q3E840 DPH3_YEAST 1 57 DBREF 4X33 B 1 333 UNP P31386 ATS1_YEAST 1 333 SEQADV 4X33 HIS A 58 UNP Q3E840 EXPRESSION TAG SEQADV 4X33 HIS A 59 UNP Q3E840 EXPRESSION TAG SEQADV 4X33 HIS A 60 UNP Q3E840 EXPRESSION TAG SEQADV 4X33 HIS A 61 UNP Q3E840 EXPRESSION TAG SEQADV 4X33 HIS A 62 UNP Q3E840 EXPRESSION TAG SEQADV 4X33 HIS A 63 UNP Q3E840 EXPRESSION TAG SEQRES 1 A 63 MET SER THR TYR ASP GLU ILE GLU ILE GLU ASP MET THR SEQRES 2 A 63 PHE GLU PRO GLU ASN GLN MET PHE THR TYR PRO CYS PRO SEQRES 3 A 63 CYS GLY ASP ARG PHE GLN ILE TYR LEU ASP ASP MET PHE SEQRES 4 A 63 GLU GLY GLU LYS VAL ALA VAL CYS PRO SER CYS SER LEU SEQRES 5 A 63 MET ILE ASP VAL VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 333 MET SER CYS VAL TYR ALA PHE GLY SER ASN GLY GLN ARG SEQRES 2 B 333 GLN LEU GLY LEU GLY HIS ASP GLU ASP MET ASP THR PRO SEQRES 3 B 333 GLN ARG SER VAL PRO GLY ASP ASP GLY ALA ILE VAL ARG SEQRES 4 B 333 LYS ILE ALA CYS GLY GLY ASN HIS SER VAL MET LEU THR SEQRES 5 B 333 ASN ASP GLY ASN LEU VAL GLY CYS GLY ASP ASN ARG ARG SEQRES 6 B 333 GLY GLU LEU ASP SER ALA GLN ALA LEU ARG GLN VAL HIS SEQRES 7 B 333 ASP TRP ARG PRO VAL GLU VAL PRO ALA PRO VAL VAL ASP SEQRES 8 B 333 VAL ALA CYS GLY TRP ASP THR THR VAL ILE VAL ASP ALA SEQRES 9 B 333 ASP GLY ARG VAL TRP GLN ARG GLY GLY GLY CYS TYR GLU SEQRES 10 B 333 PHE THR GLN GLN HIS VAL PRO LEU ASN SER ASN ASP GLU SEQRES 11 B 333 ARG ILE ALA VAL TYR GLY CYS PHE GLN ASN PHE VAL VAL SEQRES 12 B 333 VAL GLN GLY THR ARG VAL TYR GLY TRP GLY SER ASN THR SEQRES 13 B 333 LYS CYS GLN LEU GLN GLU PRO LYS SER ARG SER LEU LYS SEQRES 14 B 333 GLU PRO VAL LEU VAL TYR ASP THR GLY SER VAL ALA VAL SEQRES 15 B 333 ASP TYR VAL ALA MET GLY LYS ASP PHE MET VAL ILE VAL SEQRES 16 B 333 ASP GLU GLY GLY ARG ILE VAL HIS ALA SER GLY ARG LEU SEQRES 17 B 333 PRO THR GLY PHE GLU LEU LYS GLN GLN GLN LYS ARG HIS SEQRES 18 B 333 ASN LEU VAL VAL LEU CYS MET TRP THR SER ILE HIS LEU SEQRES 19 B 333 TRP ASN ALA ARG LEU ASN THR VAL GLU SER PHE GLY ARG SEQRES 20 B 333 GLY THR HIS SER GLN LEU PHE PRO GLN GLU ARG LEU ASP SEQRES 21 B 333 PHE PRO ILE VAL GLY VAL ALA THR GLY SER GLU HIS GLY SEQRES 22 B 333 ILE LEU THR THR ALA ASN GLN GLU GLY LYS SER HIS CSO SEQRES 23 B 333 TYR ASN VAL TYR CYS TRP GLY TRP GLY GLU HIS GLY ASN SEQRES 24 B 333 CYS GLY PRO GLN LYS GLY SER GLN PRO GLY LEU GLN LEU SEQRES 25 B 333 VAL GLY GLN TYR SER GLY LYS PRO ARG VAL PHE GLY GLY SEQRES 26 B 333 CYS ALA THR THR TRP ILE VAL LEU MODRES 4X33 CSO B 286 CYS MODIFIED RESIDUE HET CSO B 286 11 HET FE A 101 1 HET CL A 102 1 HET CL A 103 1 HET CL A 104 1 HET CL B 401 1 HET CL B 402 1 HET CL B 403 1 HET CL B 404 1 HET CL B 405 1 HET DXE B 406 10 HET MG B 407 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETNAM DXE 1,2-DIMETHOXYETHANE HETNAM MG MAGNESIUM ION FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 FE FE 3+ FORMUL 4 CL 8(CL 1-) FORMUL 12 DXE C4 H10 O2 FORMUL 13 MG MG 2+ FORMUL 14 HOH *549(H2 O) HELIX 1 AA1 GLU A 10 MET A 12 5 3 HELIX 2 AA2 LEU A 35 GLU A 40 1 6 HELIX 3 AA3 GLU B 213 GLN B 217 5 5 SHEET 1 AA1 3 ASP A 5 GLU A 8 0 SHEET 2 AA1 3 MET A 53 VAL A 57 1 O ASP A 55 N ILE A 7 SHEET 3 AA1 3 VAL A 44 VAL A 46 -1 N ALA A 45 O ILE A 54 SHEET 1 AA2 3 THR A 13 GLU A 15 0 SHEET 2 AA2 3 MET A 20 PRO A 24 -1 O MET A 20 N GLU A 15 SHEET 3 AA2 3 ARG A 30 TYR A 34 -1 O ILE A 33 N PHE A 21 SHEET 1 AA3 4 MET B 23 SER B 29 0 SHEET 2 AA3 4 CYS B 3 GLY B 8 -1 N VAL B 4 O SER B 29 SHEET 3 AA3 4 THR B 328 LEU B 333 -1 O LEU B 333 N CYS B 3 SHEET 4 AA3 4 ARG B 321 GLY B 324 -1 N ARG B 321 O VAL B 332 SHEET 1 AA4 4 VAL B 38 CYS B 43 0 SHEET 2 AA4 4 HIS B 47 THR B 52 -1 O LEU B 51 N ARG B 39 SHEET 3 AA4 4 LEU B 57 ASP B 62 -1 O VAL B 58 N MET B 50 SHEET 4 AA4 4 GLN B 76 PRO B 82 -1 O VAL B 77 N GLY B 61 SHEET 1 AA5 4 VAL B 89 CYS B 94 0 SHEET 2 AA5 4 THR B 98 ASP B 103 -1 O VAL B 100 N ALA B 93 SHEET 3 AA5 4 VAL B 108 GLY B 112 -1 O TRP B 109 N ILE B 101 SHEET 4 AA5 4 CYS B 115 GLN B 121 -1 O CYS B 115 N GLY B 112 SHEET 1 AA6 4 ILE B 132 CYS B 137 0 SHEET 2 AA6 4 ASN B 140 GLN B 145 -1 O VAL B 144 N ALA B 133 SHEET 3 AA6 4 ARG B 148 ASN B 155 -1 O TYR B 150 N VAL B 143 SHEET 4 AA6 4 SER B 165 ASP B 176 -1 O LEU B 168 N GLY B 153 SHEET 1 AA7 3 VAL B 182 MET B 187 0 SHEET 2 AA7 3 PHE B 191 ASP B 196 -1 O VAL B 193 N ALA B 186 SHEET 3 AA7 3 ILE B 201 GLY B 206 -1 O HIS B 203 N ILE B 194 SHEET 1 AA8 3 VAL B 224 MET B 228 0 SHEET 2 AA8 3 SER B 231 ASN B 236 -1 O TRP B 235 N VAL B 224 SHEET 3 AA8 3 THR B 241 PHE B 245 -1 O GLU B 243 N LEU B 234 SHEET 1 AA9 4 ILE B 263 THR B 268 0 SHEET 2 AA9 4 HIS B 272 ALA B 278 -1 O ILE B 274 N ALA B 267 SHEET 3 AA9 4 TYR B 287 GLY B 293 -1 O TYR B 290 N LEU B 275 SHEET 4 AA9 4 GLN B 311 TYR B 316 -1 O VAL B 313 N VAL B 289 LINK SG CYS A 25 FE FE A 101 1555 1555 2.32 LINK SG CYS A 27 FE FE A 101 1555 1555 2.36 LINK SG CYS A 47 FE FE A 101 1555 1555 2.34 LINK SG CYS A 50 FE FE A 101 1555 1555 2.25 LINK C HIS B 285 N CSO B 286 1555 1555 1.36 LINK C CSO B 286 N TYR B 287 1555 1555 1.32 LINK MG MG B 407 O HOH B 647 1555 1555 2.28 LINK MG MG B 407 O HOH B 658 1555 1555 2.15 LINK MG MG B 407 O HOH B 568 1555 1555 2.59 LINK MG MG B 407 O HOH B 672 1555 1555 2.37 LINK MG MG B 407 O HOH B 529 1555 1655 2.08 LINK MG MG B 407 O HOH B 617 1555 1655 2.30 CISPEP 1 GLU B 162 PRO B 163 0 -9.22 SITE 1 AC1 4 CYS A 25 CYS A 27 CYS A 47 CYS A 50 SITE 1 AC2 3 TYR A 4 MET A 53 HOH A 245 SITE 1 AC3 2 PHE A 14 HOH A 211 SITE 1 AC4 4 HOH A 230 GLN B 139 HOH B 903 HOH B 905 SITE 1 AC5 3 ILE B 37 ASN B 53 ASP B 54 SITE 1 AC6 2 LEU B 312 HOH B 667 SITE 1 AC7 3 THR B 119 GLN B 120 HOH B 589 SITE 1 AC8 3 PRO B 302 LYS B 304 HOH B 622 SITE 1 AC9 3 ASP B 260 PHE B 261 HOH B 863 SITE 1 AD1 7 ARG B 13 GLY B 18 HIS B 19 ASP B 20 SITE 2 AD1 7 ARG B 64 ARG B 75 HOH B 584 SITE 1 AD2 6 HOH B 529 HOH B 568 HOH B 617 HOH B 647 SITE 2 AD2 6 HOH B 658 HOH B 672 CRYST1 49.790 89.009 163.530 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006115 0.00000