HEADER TRANSFERASE 01-DEC-14 4X3M TITLE CRYSTAL STRUCTURE OF TTHA0275 FROM THERMUS THERMOPHILUS (HB8) IN TITLE 2 COMPLEX WITH ADENOSINE IN SPACE GROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA 2'-O RIBOSE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TTHA0275; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 5 GENE: TTHA0275; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS TTHA0275 METHYLTRANSFERASE ADOMET ADENOSINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,R.BELARDINELLI,G.JOGL REVDAT 5 28-FEB-24 4X3M 1 LINK REVDAT 4 25-DEC-19 4X3M 1 REMARK REVDAT 3 13-SEP-17 4X3M 1 REMARK REVDAT 2 22-MAR-17 4X3M 1 SOURCE REVDAT 1 11-NOV-15 4X3M 0 JRNL AUTH H.DEMIRCI,R.BELARDINELLI,G.JOGL JRNL TITL CRYSTAL STRUCTURE OF TTHA0275 FROM THERMUS THERMOPHILUS JRNL TITL 2 (HB8) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8610 - 4.5598 1.00 2846 150 0.1506 0.1685 REMARK 3 2 4.5598 - 3.6218 1.00 2746 143 0.1346 0.1737 REMARK 3 3 3.6218 - 3.1647 1.00 2695 143 0.1584 0.2082 REMARK 3 4 3.1647 - 2.8757 0.99 2645 139 0.1797 0.2312 REMARK 3 5 2.8757 - 2.6697 1.00 2698 142 0.1841 0.2336 REMARK 3 6 2.6697 - 2.5124 1.00 2622 138 0.1813 0.2244 REMARK 3 7 2.5124 - 2.3867 1.00 2676 141 0.1779 0.2354 REMARK 3 8 2.3867 - 2.2828 1.00 2616 137 0.1757 0.2652 REMARK 3 9 2.2828 - 2.1950 1.00 2644 139 0.1817 0.2022 REMARK 3 10 2.1950 - 2.1193 1.00 2644 140 0.1830 0.2583 REMARK 3 11 2.1193 - 2.0530 1.00 2637 139 0.1894 0.2489 REMARK 3 12 2.0530 - 1.9944 1.00 2614 137 0.1973 0.2544 REMARK 3 13 1.9944 - 1.9419 1.00 2614 138 0.2163 0.2604 REMARK 3 14 1.9419 - 1.8945 0.98 2574 135 0.2596 0.2777 REMARK 3 15 1.8945 - 1.8514 0.94 2466 130 0.2988 0.3485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4056 REMARK 3 ANGLE : 0.811 5498 REMARK 3 CHIRALITY : 0.032 626 REMARK 3 PLANARITY : 0.004 728 REMARK 3 DIHEDRAL : 11.737 1540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8050 13.1670 8.6982 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.1021 REMARK 3 T33: 0.1712 T12: -0.0182 REMARK 3 T13: -0.0369 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.0256 L22: 0.0106 REMARK 3 L33: 0.0171 L12: 0.0184 REMARK 3 L13: 0.0073 L23: 0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.0055 S13: -0.0310 REMARK 3 S21: 0.0338 S22: -0.0310 S23: -0.1039 REMARK 3 S31: -0.0287 S32: -0.0153 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5098 9.4559 6.1579 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.1323 REMARK 3 T33: 0.1325 T12: 0.0022 REMARK 3 T13: -0.0027 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0125 L22: 0.1040 REMARK 3 L33: 0.1023 L12: -0.0057 REMARK 3 L13: 0.0983 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: 0.0367 S13: 0.0286 REMARK 3 S21: 0.0869 S22: -0.1632 S23: 0.1692 REMARK 3 S31: 0.0011 S32: 0.0749 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5399 -9.5941 -3.3334 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.1163 REMARK 3 T33: 0.0968 T12: 0.0273 REMARK 3 T13: -0.0328 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: -0.0105 L22: 0.0342 REMARK 3 L33: 0.0590 L12: -0.0026 REMARK 3 L13: 0.0746 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: 0.0282 S13: 0.0244 REMARK 3 S21: 0.0722 S22: -0.0540 S23: -0.0274 REMARK 3 S31: 0.0274 S32: -0.0602 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0082 -17.6317 -17.6966 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1214 REMARK 3 T33: -0.0049 T12: 0.0528 REMARK 3 T13: -0.0458 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: -0.0577 L22: 0.0443 REMARK 3 L33: 0.0799 L12: 0.0539 REMARK 3 L13: 0.1062 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.1410 S12: 0.1766 S13: 0.0529 REMARK 3 S21: 0.1161 S22: 0.0262 S23: 0.1301 REMARK 3 S31: 0.0717 S32: 0.1027 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4926 24.2821 -32.3894 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0824 REMARK 3 T33: 0.1523 T12: -0.0247 REMARK 3 T13: -0.0331 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0157 REMARK 3 L33: 0.0157 L12: 0.0096 REMARK 3 L13: 0.0159 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0397 S13: 0.0101 REMARK 3 S21: 0.0704 S22: 0.0311 S23: -0.0630 REMARK 3 S31: -0.0563 S32: -0.1177 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8850 18.9239 -34.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.0582 T22: 0.0870 REMARK 3 T33: 0.1135 T12: -0.0095 REMARK 3 T13: -0.0050 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0053 REMARK 3 L33: 0.0099 L12: -0.0142 REMARK 3 L13: -0.0089 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.0210 S13: 0.1229 REMARK 3 S21: -0.0693 S22: 0.0497 S23: 0.0108 REMARK 3 S31: 0.0944 S32: 0.0293 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4872 11.0142 -33.7976 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0750 REMARK 3 T33: 0.0908 T12: 0.0115 REMARK 3 T13: -0.0090 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.0652 L22: 0.0604 REMARK 3 L33: 0.0564 L12: -0.0571 REMARK 3 L13: 0.0310 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0039 S13: -0.0357 REMARK 3 S21: -0.0203 S22: 0.0481 S23: -0.0310 REMARK 3 S31: 0.0088 S32: 0.0326 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1415 3.5572 -41.5283 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.1454 REMARK 3 T33: 0.1653 T12: -0.0035 REMARK 3 T13: 0.0145 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0008 REMARK 3 L33: 0.0114 L12: -0.0082 REMARK 3 L13: -0.0184 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.0297 S13: 0.0861 REMARK 3 S21: -0.0683 S22: -0.0057 S23: -0.1062 REMARK 3 S31: 0.2055 S32: -0.0458 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0832 4.8428 -27.7260 REMARK 3 T TENSOR REMARK 3 T11: -0.1550 T22: 0.1027 REMARK 3 T33: 0.1026 T12: -0.0247 REMARK 3 T13: 0.0061 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.0202 L22: -0.0029 REMARK 3 L33: 0.0426 L12: 0.0238 REMARK 3 L13: -0.0229 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.1073 S13: 0.0479 REMARK 3 S21: -0.5891 S22: -0.1937 S23: 0.0040 REMARK 3 S31: 0.2147 S32: 0.1048 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7614 4.4349 -35.3122 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1388 REMARK 3 T33: 0.1178 T12: -0.0058 REMARK 3 T13: -0.0036 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: 0.0140 REMARK 3 L33: 0.0228 L12: 0.0112 REMARK 3 L13: 0.0022 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.1558 S13: -0.0203 REMARK 3 S21: 0.0351 S22: -0.0004 S23: 0.0422 REMARK 3 S31: -0.0051 S32: 0.0409 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3161 -6.3178 -24.4985 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.0777 REMARK 3 T33: 0.0761 T12: 0.0026 REMARK 3 T13: 0.0133 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.0073 L22: 0.0143 REMARK 3 L33: 0.0018 L12: -0.0053 REMARK 3 L13: -0.0015 L23: -0.0137 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.0015 S13: 0.0097 REMARK 3 S21: -0.0002 S22: 0.0126 S23: 0.0881 REMARK 3 S31: -0.0145 S32: 0.0256 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1950 -5.0716 -23.6416 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0696 REMARK 3 T33: 0.0811 T12: -0.0115 REMARK 3 T13: -0.0120 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 0.0093 REMARK 3 L33: 0.0208 L12: 0.0169 REMARK 3 L13: -0.0252 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0059 S13: 0.0215 REMARK 3 S21: 0.0316 S22: 0.0382 S23: 0.0086 REMARK 3 S31: 0.0288 S32: -0.0744 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2088 -3.3700 -17.0242 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.0974 REMARK 3 T33: 0.1167 T12: 0.0154 REMARK 3 T13: 0.0199 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: -0.0020 L22: 0.0261 REMARK 3 L33: 0.0203 L12: 0.0155 REMARK 3 L13: -0.0080 L23: 0.0118 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0872 S13: 0.2074 REMARK 3 S21: 0.1069 S22: -0.0908 S23: 0.1522 REMARK 3 S31: 0.0340 S32: -0.0736 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7486 -12.2012 -24.8703 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0821 REMARK 3 T33: 0.0623 T12: 0.0066 REMARK 3 T13: -0.0041 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0216 L22: 0.0023 REMARK 3 L33: 0.0137 L12: -0.0042 REMARK 3 L13: 0.0057 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0154 S13: -0.0282 REMARK 3 S21: 0.0968 S22: -0.0118 S23: 0.0461 REMARK 3 S31: 0.0755 S32: 0.0698 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39741 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 200 DATA REDUNDANCY : 3.980 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.04 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, AND 3.5 M AMMONIUM REMARK 280 CHLORIDE, PH 8.5, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.31200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.91700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.91700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.31200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 648 O HOH B 727 2.10 REMARK 500 O HOH B 415 O HOH B 586 2.11 REMARK 500 O HOH B 498 O HOH B 619 2.12 REMARK 500 NH1 ARG B 254 O HOH B 716 2.17 REMARK 500 O HOH A 600 O HOH B 535 2.17 REMARK 500 O HOH B 403 O HOH B 497 2.17 REMARK 500 O HOH B 746 O HOH B 750 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 474 O HOH B 511 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 211 -39.93 64.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 628 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 741 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 744 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 746 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B 747 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH B 748 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 749 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 750 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 751 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 24 O REMARK 620 2 ARG B 25 O 76.1 REMARK 620 3 GLU B 177 O 66.5 140.7 REMARK 620 4 HIS B 179 O 63.2 135.9 5.6 REMARK 620 5 HOH B 446 O 86.4 110.6 56.9 53.3 REMARK 620 6 HOH B 457 O 142.0 137.9 81.4 86.2 92.9 REMARK 620 7 HOH B 514 O 153.3 89.0 119.6 120.2 78.1 61.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 303 DBREF 4X3M A 1 260 UNP Q5SLL8 Q5SLL8_THET8 1 260 DBREF 4X3M B 1 260 UNP Q5SLL8 Q5SLL8_THET8 1 260 SEQRES 1 A 260 MET ARG ILE GLU SER PRO GLN ASN PRO ARG VAL LYS ALA SEQRES 2 A 260 LEU ALA ALA LEU LYS GLU ARG LYS GLU ARG GLU ARG THR SEQRES 3 A 260 GLY ARG PHE LEU VAL GLU GLY ARG ARG GLU VAL GLU ARG SEQRES 4 A 260 ALA LEU GLU ALA GLY LEU SER LEU GLU THR LEU LEU LEU SEQRES 5 A 260 GLY PRO LYS ALA ARG PRO GLU ASP ARG ALA LEU ALA GLY SEQRES 6 A 260 GLY ALA GLU VAL LEU GLU LEU SER GLU ARG ALA LEU ALA SEQRES 7 A 260 ARG VAL SER THR ARG GLU ASN PRO ALA GLN VAL LEU GLY SEQRES 8 A 260 VAL PHE ARG LEU PRO ARG ARG SER LEU ALA GLY VAL THR SEQRES 9 A 260 LEU GLY ALA ALA PRO LEU VAL LEU VAL LEU LEU GLY LEU SEQRES 10 A 260 GLU LYS PRO GLY ASN LEU GLY ALA ILE LEU ARG ALA ALA SEQRES 11 A 260 ASP GLY ALA GLY ALA ASP LEU VAL LEU VAL ALA GLU GLY SEQRES 12 A 260 VAL ASP LEU PHE SER PRO GLN VAL ILE ARG ASN SER THR SEQRES 13 A 260 GLY ALA VAL PHE ALA LEU PRO VAL TYR PRO VAL ALA GLU SEQRES 14 A 260 GLY GLU ALA ALA ARG PHE LEU GLU GLU HIS ASN LEU PRO SEQRES 15 A 260 LEU VAL ALA ALA THR PRO GLU GLY GLU ARG LEU TYR TRP SEQRES 16 A 260 GLU GLY ASP TYR ARG GLY GLY VAL ALA PHE LEU LEU GLY SEQRES 17 A 260 ALA GLU ASP LYS GLY LEU PRO GLU ALA TRP LYS ARG ARG SEQRES 18 A 260 ALA GLN VAL ARG VAL ARG ILE PRO MET ARG GLY ARG ALA SEQRES 19 A 260 ASP SER LEU ASN VAL ALA VAL THR ALA ALA LEU LEU LEU SEQRES 20 A 260 TYR GLU ALA LEU ARG GLN ARG SER GLY GLY ALA PRO LEU SEQRES 1 B 260 MET ARG ILE GLU SER PRO GLN ASN PRO ARG VAL LYS ALA SEQRES 2 B 260 LEU ALA ALA LEU LYS GLU ARG LYS GLU ARG GLU ARG THR SEQRES 3 B 260 GLY ARG PHE LEU VAL GLU GLY ARG ARG GLU VAL GLU ARG SEQRES 4 B 260 ALA LEU GLU ALA GLY LEU SER LEU GLU THR LEU LEU LEU SEQRES 5 B 260 GLY PRO LYS ALA ARG PRO GLU ASP ARG ALA LEU ALA GLY SEQRES 6 B 260 GLY ALA GLU VAL LEU GLU LEU SER GLU ARG ALA LEU ALA SEQRES 7 B 260 ARG VAL SER THR ARG GLU ASN PRO ALA GLN VAL LEU GLY SEQRES 8 B 260 VAL PHE ARG LEU PRO ARG ARG SER LEU ALA GLY VAL THR SEQRES 9 B 260 LEU GLY ALA ALA PRO LEU VAL LEU VAL LEU LEU GLY LEU SEQRES 10 B 260 GLU LYS PRO GLY ASN LEU GLY ALA ILE LEU ARG ALA ALA SEQRES 11 B 260 ASP GLY ALA GLY ALA ASP LEU VAL LEU VAL ALA GLU GLY SEQRES 12 B 260 VAL ASP LEU PHE SER PRO GLN VAL ILE ARG ASN SER THR SEQRES 13 B 260 GLY ALA VAL PHE ALA LEU PRO VAL TYR PRO VAL ALA GLU SEQRES 14 B 260 GLY GLU ALA ALA ARG PHE LEU GLU GLU HIS ASN LEU PRO SEQRES 15 B 260 LEU VAL ALA ALA THR PRO GLU GLY GLU ARG LEU TYR TRP SEQRES 16 B 260 GLU GLY ASP TYR ARG GLY GLY VAL ALA PHE LEU LEU GLY SEQRES 17 B 260 ALA GLU ASP LYS GLY LEU PRO GLU ALA TRP LYS ARG ARG SEQRES 18 B 260 ALA GLN VAL ARG VAL ARG ILE PRO MET ARG GLY ARG ALA SEQRES 19 B 260 ASP SER LEU ASN VAL ALA VAL THR ALA ALA LEU LEU LEU SEQRES 20 B 260 TYR GLU ALA LEU ARG GLN ARG SER GLY GLY ALA PRO LEU HET ADN A 301 19 HET ADN B 301 19 HET PO4 B 302 5 HET K B 303 1 HETNAM ADN ADENOSINE HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION FORMUL 3 ADN 2(C10 H13 N5 O4) FORMUL 5 PO4 O4 P 3- FORMUL 6 K K 1+ FORMUL 7 HOH *582(H2 O) HELIX 1 AA1 ASN A 8 LEU A 17 1 10 HELIX 2 AA2 GLU A 19 GLY A 27 1 9 HELIX 3 AA3 GLY A 33 ALA A 43 1 11 HELIX 4 AA4 ARG A 57 GLY A 65 5 9 HELIX 5 AA5 SER A 73 SER A 81 1 9 HELIX 6 AA6 SER A 99 VAL A 103 5 5 HELIX 7 AA7 LYS A 119 GLY A 134 1 16 HELIX 8 AA8 SER A 148 SER A 155 1 8 HELIX 9 AA9 GLY A 157 LEU A 162 1 6 HELIX 10 AB1 ALA A 168 HIS A 179 1 12 HELIX 11 AB2 TRP A 195 GLY A 197 5 3 HELIX 12 AB3 PRO A 215 ALA A 222 1 8 HELIX 13 AB4 ASN A 238 SER A 255 1 18 HELIX 14 AB5 ASN B 8 LEU B 17 1 10 HELIX 15 AB6 GLU B 19 GLY B 27 1 9 HELIX 16 AB7 GLY B 33 ALA B 43 1 11 HELIX 17 AB8 ARG B 57 GLY B 65 5 9 HELIX 18 AB9 SER B 73 SER B 81 1 9 HELIX 19 AC1 LYS B 119 GLY B 134 1 16 HELIX 20 AC2 SER B 148 SER B 155 1 8 HELIX 21 AC3 ALA B 168 GLU B 178 1 11 HELIX 22 AC4 TRP B 195 GLY B 197 5 3 HELIX 23 AC5 PRO B 215 ALA B 222 1 8 HELIX 24 AC6 ASN B 238 SER B 255 1 18 SHEET 1 AA1 5 ARG A 2 ILE A 3 0 SHEET 2 AA1 5 GLU A 68 LEU A 72 1 O GLU A 71 N ILE A 3 SHEET 3 AA1 5 LEU A 47 LEU A 52 1 N LEU A 50 O GLU A 68 SHEET 4 AA1 5 VAL A 89 ARG A 94 -1 O LEU A 90 N LEU A 51 SHEET 5 AA1 5 ARG A 28 GLU A 32 -1 N PHE A 29 O PHE A 93 SHEET 1 AA2 7 VAL A 164 PRO A 166 0 SHEET 2 AA2 7 LEU A 137 VAL A 140 1 N VAL A 138 O TYR A 165 SHEET 3 AA2 7 LEU A 110 LEU A 115 1 N LEU A 114 O LEU A 139 SHEET 4 AA2 7 VAL A 203 GLY A 208 1 O PHE A 205 N VAL A 113 SHEET 5 AA2 7 LEU A 183 ALA A 186 1 N VAL A 184 O LEU A 206 SHEET 6 AA2 7 VAL A 224 ARG A 227 1 O VAL A 226 N ALA A 185 SHEET 7 AA2 7 ARG A 192 LEU A 193 1 N ARG A 192 O ARG A 227 SHEET 1 AA3 5 ARG B 2 ILE B 3 0 SHEET 2 AA3 5 GLU B 68 LEU B 72 1 O GLU B 71 N ILE B 3 SHEET 3 AA3 5 LEU B 47 LEU B 52 1 N LEU B 50 O GLU B 68 SHEET 4 AA3 5 VAL B 89 ARG B 94 -1 O VAL B 92 N GLU B 48 SHEET 5 AA3 5 ARG B 28 GLU B 32 -1 N VAL B 31 O GLY B 91 SHEET 1 AA4 7 VAL B 164 PRO B 166 0 SHEET 2 AA4 7 LEU B 137 VAL B 140 1 N VAL B 140 O TYR B 165 SHEET 3 AA4 7 LEU B 110 LEU B 115 1 N LEU B 114 O LEU B 139 SHEET 4 AA4 7 VAL B 203 GLY B 208 1 O PHE B 205 N VAL B 113 SHEET 5 AA4 7 LEU B 183 ALA B 186 1 N ALA B 186 O LEU B 206 SHEET 6 AA4 7 VAL B 224 ARG B 227 1 O VAL B 226 N ALA B 185 SHEET 7 AA4 7 ARG B 192 LEU B 193 1 N ARG B 192 O ARG B 227 LINK O GLU B 24 K K B 303 1555 1555 2.85 LINK O ARG B 25 K K B 303 1555 1555 2.72 LINK O GLU B 177 K K B 303 1555 3544 2.73 LINK O HIS B 179 K K B 303 1555 3544 2.77 LINK K K B 303 O HOH B 446 1555 3554 2.77 LINK K K B 303 O HOH B 457 1555 3554 3.30 LINK K K B 303 O HOH B 514 1555 1555 2.79 SITE 1 AC1 14 THR A 187 PRO A 188 LEU A 207 GLY A 208 SITE 2 AC1 14 GLU A 210 ARG A 227 ILE A 228 MET A 230 SITE 3 AC1 14 SER A 236 LEU A 237 THR A 242 HOH A 526 SITE 4 AC1 14 HOH A 549 HOH A 624 SITE 1 AC2 13 THR B 187 PRO B 188 LEU B 207 GLY B 208 SITE 2 AC2 13 ILE B 228 MET B 230 SER B 236 LEU B 237 SITE 3 AC2 13 VAL B 239 THR B 242 HOH B 403 HOH B 449 SITE 4 AC2 13 HOH B 546 SITE 1 AC3 9 ARG B 34 LYS B 55 ARG B 57 GLN B 88 SITE 2 AC3 9 ARG B 220 HOH B 419 HOH B 420 HOH B 428 SITE 3 AC3 9 HOH B 433 SITE 1 AC4 6 GLU B 24 ARG B 25 GLU B 177 HIS B 179 SITE 2 AC4 6 HOH B 446 HOH B 514 CRYST1 54.624 55.290 159.834 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006256 0.00000