HEADER PROTEIN BINDING 01-DEC-14 4X3N TITLE CRYSTAL STRUCTURE OF 34 KDA F-ACTIN BUNDLING PROTEIN FROM TITLE 2 DICTYOSTELIUM DISCOIDEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-REGULATED ACTIN-BUNDLING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 34 KDA ACTIN-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: ABPB, DDB_G0279081; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ACTIN, CYTOSKELETON, BUNDLING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.-K.KIM,J.-H.KIM,J.-S.KIM,S.-O.KANG REVDAT 2 20-MAR-24 4X3N 1 REMARK LINK REVDAT 1 16-SEP-15 4X3N 0 JRNL AUTH M.K.KIM,J.H.KIM,J.S.KIM,S.O.KANG JRNL TITL STRUCTURE OF THE 34 KDA F-ACTIN-BUNDLING PROTEIN ABP34 FROM JRNL TITL 2 DICTYOSTELIUM DISCOIDEUM. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1835 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26327373 JRNL DOI 10.1107/S139900471501264X REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 68586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4772 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 242 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 1.61000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6436 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6062 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8661 ; 1.740 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13995 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 766 ; 5.852 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 325 ;34.921 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1170 ;17.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.178 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 894 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7262 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1507 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3082 ; 2.764 ; 3.274 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3081 ; 2.759 ; 3.274 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3842 ; 3.888 ; 4.892 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3843 ; 3.889 ; 4.893 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3354 ; 3.523 ; 3.603 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3352 ; 3.517 ; 3.602 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4819 ; 5.374 ; 5.243 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 29000 ; 7.364 ;30.641 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 28997 ; 7.364 ;30.639 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4X3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 72.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 34.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, SODIUM CITRATE, PEG REMARK 280 4000, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.08050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.87200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.62200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.87200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.08050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.62200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 ASN A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 ILE A 13 REMARK 465 GLU A 14 REMARK 465 GLN A 15 REMARK 465 THR A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 GLN A 20 REMARK 465 SER A 21 REMARK 465 PHE A 22 REMARK 465 THR A 23 REMARK 465 SER A 261 REMARK 465 GLY A 262 REMARK 465 GLY A 263 REMARK 465 ALA A 264 REMARK 465 GLY A 265 REMARK 465 ASP A 266 REMARK 465 ALA A 267 REMARK 465 GLY A 268 REMARK 465 ALA A 269 REMARK 465 GLY A 270 REMARK 465 GLN A 293 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 8 REMARK 465 ASN B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 ILE B 13 REMARK 465 GLU B 14 REMARK 465 GLN B 15 REMARK 465 THR B 16 REMARK 465 LYS B 17 REMARK 465 ALA B 18 REMARK 465 GLY B 19 REMARK 465 GLN B 20 REMARK 465 SER B 21 REMARK 465 PHE B 22 REMARK 465 THR B 23 REMARK 465 GLY B 257 REMARK 465 ALA B 258 REMARK 465 ALA B 259 REMARK 465 TYR B 260 REMARK 465 SER B 261 REMARK 465 GLY B 262 REMARK 465 GLY B 263 REMARK 465 ALA B 264 REMARK 465 GLY B 265 REMARK 465 ASP B 266 REMARK 465 ALA B 267 REMARK 465 GLY B 268 REMARK 465 ALA B 269 REMARK 465 GLY B 270 REMARK 465 GLN B 293 REMARK 465 LYS B 294 REMARK 465 LYS B 295 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 LYS C 5 REMARK 465 VAL C 6 REMARK 465 ALA C 7 REMARK 465 PRO C 8 REMARK 465 ASN C 9 REMARK 465 LEU C 10 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 ILE C 13 REMARK 465 GLU C 14 REMARK 465 GLN C 15 REMARK 465 THR C 16 REMARK 465 LYS C 17 REMARK 465 ALA C 18 REMARK 465 GLY C 19 REMARK 465 GLN C 20 REMARK 465 SER C 21 REMARK 465 PHE C 22 REMARK 465 THR C 23 REMARK 465 GLU C 24 REMARK 465 GLY C 257 REMARK 465 ALA C 258 REMARK 465 ALA C 259 REMARK 465 TYR C 260 REMARK 465 SER C 261 REMARK 465 GLY C 262 REMARK 465 GLY C 263 REMARK 465 ALA C 264 REMARK 465 GLY C 265 REMARK 465 ASP C 266 REMARK 465 ALA C 267 REMARK 465 GLY C 268 REMARK 465 ALA C 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 481 O HOH A 531 2.02 REMARK 500 OE1 GLU C 62 NH1 ARG C 281 2.11 REMARK 500 OH TYR C 118 O HOH C 455 2.13 REMARK 500 OE1 GLU C 70 O HOH C 500 2.18 REMARK 500 O HOH C 406 O HOH C 471 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 416 O HOH B 405 3544 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 135 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 -39.74 -138.44 REMARK 500 SER A 211 -38.71 -33.32 REMARK 500 LYS A 217 155.60 166.71 REMARK 500 ALA A 259 -24.85 84.66 REMARK 500 ASN B 92 -36.71 -135.48 REMARK 500 ASN B 176 14.65 58.98 REMARK 500 HIS B 177 72.70 -115.47 REMARK 500 SER C 58 -38.11 -35.22 REMARK 500 ASN C 92 -31.84 -141.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 144 OD1 REMARK 620 2 ASN A 146 OD1 79.4 REMARK 620 3 ASP A 148 OD1 79.1 83.6 REMARK 620 4 ARG A 150 O 86.3 163.0 84.7 REMARK 620 5 GLU A 155 OE1 129.0 113.1 148.3 83.1 REMARK 620 6 GLU A 155 OE2 88.7 78.8 160.2 110.2 50.0 REMARK 620 7 HOH A 426 O 156.8 84.6 82.6 106.1 72.9 104.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 144 OD1 REMARK 620 2 ASN B 146 OD1 79.6 REMARK 620 3 ASP B 148 OD1 80.4 82.5 REMARK 620 4 ARG B 150 O 88.2 161.6 81.8 REMARK 620 5 GLU B 155 OE1 133.1 114.2 143.2 84.2 REMARK 620 6 GLU B 155 OE2 90.8 83.8 164.9 110.4 50.1 REMARK 620 7 HOH B 500 O 158.7 85.5 82.7 102.0 67.2 102.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 144 OD1 REMARK 620 2 ASN C 146 OD1 82.5 REMARK 620 3 ASP C 148 OD1 78.0 83.5 REMARK 620 4 ARG C 150 O 84.3 163.9 84.7 REMARK 620 5 GLU C 155 OE1 133.0 109.0 146.7 86.8 REMARK 620 6 GLU C 155 OE2 93.7 75.7 158.5 114.5 49.6 REMARK 620 7 HOH C 432 O 156.6 86.4 80.3 102.4 70.3 103.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 301 DBREF 4X3N A 1 295 UNP P24005 ACTB_DICDI 1 295 DBREF 4X3N B 1 295 UNP P24005 ACTB_DICDI 1 295 DBREF 4X3N C 1 295 UNP P24005 ACTB_DICDI 1 295 SEQRES 1 A 295 MET ALA GLU THR LYS VAL ALA PRO ASN LEU THR GLY ILE SEQRES 2 A 295 GLU GLN THR LYS ALA GLY GLN SER PHE THR GLU LYS LEU SEQRES 3 A 295 SER ALA GLU ALA MET GLU PHE PHE CYS ASN VAL ALA LYS SEQRES 4 A 295 LEU PRO PHE SER GLN GLN ALA VAL HIS PHE LEU ASN ALA SEQRES 5 A 295 TYR TRP ALA GLU VAL SER LYS GLU ALA GLU PHE ILE TYR SEQRES 6 A 295 SER VAL GLY TRP GLU THR ILE LYS TYR ALA ASP MET HIS SEQRES 7 A 295 CYS LYS GLY ILE GLN LEU VAL PHE LYS TYR ASP GLU GLY SEQRES 8 A 295 ASN ASP LEU ASP PHE ASP ILE ALA LEU TYR PHE TYR GLU SEQRES 9 A 295 GLN LEU CYS LYS PHE CYS GLU ASP PRO LYS ASN LYS ASN SEQRES 10 A 295 TYR ALA THR THR TYR PRO ILE SER GLN PRO GLN MET LEU SEQRES 11 A 295 THR ALA LEU LYS ARG LYS GLN GLU LEU ARG GLU LYS VAL SEQRES 12 A 295 ASP VAL ASN PHE ASP GLY ARG VAL SER PHE LEU GLU TYR SEQRES 13 A 295 LEU LEU TYR GLN TYR LYS ASP PHE ALA ASN PRO ALA ASP SEQRES 14 A 295 PHE CYS THR ARG SER MET ASN HIS ASP GLU HIS PRO GLU SEQRES 15 A 295 ILE LYS LYS ALA ARG LEU ALA LEU GLU GLU VAL ASN LYS SEQRES 16 A 295 ARG ILE ARG ALA TYR GLU GLU GLU LYS ALA ARG LEU THR SEQRES 17 A 295 GLU GLU SER LYS ILE PRO GLY VAL LYS GLY LEU GLY ALA SEQRES 18 A 295 THR ASN MET LEU ALA GLN ILE ASP SER GLY PRO LEU LYS SEQRES 19 A 295 GLU GLN LEU ASN PHE ALA LEU ILE SER ALA GLU ALA ALA SEQRES 20 A 295 VAL ARG THR ALA SER LYS LYS TYR GLY GLY ALA ALA TYR SEQRES 21 A 295 SER GLY GLY ALA GLY ASP ALA GLY ALA GLY SER SER ALA SEQRES 22 A 295 GLY ALA ILE TRP TRP MET ASN ARG ASP LEU GLU GLU LYS SEQRES 23 A 295 LYS LYS ARG TYR GLY PRO GLN LYS LYS SEQRES 1 B 295 MET ALA GLU THR LYS VAL ALA PRO ASN LEU THR GLY ILE SEQRES 2 B 295 GLU GLN THR LYS ALA GLY GLN SER PHE THR GLU LYS LEU SEQRES 3 B 295 SER ALA GLU ALA MET GLU PHE PHE CYS ASN VAL ALA LYS SEQRES 4 B 295 LEU PRO PHE SER GLN GLN ALA VAL HIS PHE LEU ASN ALA SEQRES 5 B 295 TYR TRP ALA GLU VAL SER LYS GLU ALA GLU PHE ILE TYR SEQRES 6 B 295 SER VAL GLY TRP GLU THR ILE LYS TYR ALA ASP MET HIS SEQRES 7 B 295 CYS LYS GLY ILE GLN LEU VAL PHE LYS TYR ASP GLU GLY SEQRES 8 B 295 ASN ASP LEU ASP PHE ASP ILE ALA LEU TYR PHE TYR GLU SEQRES 9 B 295 GLN LEU CYS LYS PHE CYS GLU ASP PRO LYS ASN LYS ASN SEQRES 10 B 295 TYR ALA THR THR TYR PRO ILE SER GLN PRO GLN MET LEU SEQRES 11 B 295 THR ALA LEU LYS ARG LYS GLN GLU LEU ARG GLU LYS VAL SEQRES 12 B 295 ASP VAL ASN PHE ASP GLY ARG VAL SER PHE LEU GLU TYR SEQRES 13 B 295 LEU LEU TYR GLN TYR LYS ASP PHE ALA ASN PRO ALA ASP SEQRES 14 B 295 PHE CYS THR ARG SER MET ASN HIS ASP GLU HIS PRO GLU SEQRES 15 B 295 ILE LYS LYS ALA ARG LEU ALA LEU GLU GLU VAL ASN LYS SEQRES 16 B 295 ARG ILE ARG ALA TYR GLU GLU GLU LYS ALA ARG LEU THR SEQRES 17 B 295 GLU GLU SER LYS ILE PRO GLY VAL LYS GLY LEU GLY ALA SEQRES 18 B 295 THR ASN MET LEU ALA GLN ILE ASP SER GLY PRO LEU LYS SEQRES 19 B 295 GLU GLN LEU ASN PHE ALA LEU ILE SER ALA GLU ALA ALA SEQRES 20 B 295 VAL ARG THR ALA SER LYS LYS TYR GLY GLY ALA ALA TYR SEQRES 21 B 295 SER GLY GLY ALA GLY ASP ALA GLY ALA GLY SER SER ALA SEQRES 22 B 295 GLY ALA ILE TRP TRP MET ASN ARG ASP LEU GLU GLU LYS SEQRES 23 B 295 LYS LYS ARG TYR GLY PRO GLN LYS LYS SEQRES 1 C 295 MET ALA GLU THR LYS VAL ALA PRO ASN LEU THR GLY ILE SEQRES 2 C 295 GLU GLN THR LYS ALA GLY GLN SER PHE THR GLU LYS LEU SEQRES 3 C 295 SER ALA GLU ALA MET GLU PHE PHE CYS ASN VAL ALA LYS SEQRES 4 C 295 LEU PRO PHE SER GLN GLN ALA VAL HIS PHE LEU ASN ALA SEQRES 5 C 295 TYR TRP ALA GLU VAL SER LYS GLU ALA GLU PHE ILE TYR SEQRES 6 C 295 SER VAL GLY TRP GLU THR ILE LYS TYR ALA ASP MET HIS SEQRES 7 C 295 CYS LYS GLY ILE GLN LEU VAL PHE LYS TYR ASP GLU GLY SEQRES 8 C 295 ASN ASP LEU ASP PHE ASP ILE ALA LEU TYR PHE TYR GLU SEQRES 9 C 295 GLN LEU CYS LYS PHE CYS GLU ASP PRO LYS ASN LYS ASN SEQRES 10 C 295 TYR ALA THR THR TYR PRO ILE SER GLN PRO GLN MET LEU SEQRES 11 C 295 THR ALA LEU LYS ARG LYS GLN GLU LEU ARG GLU LYS VAL SEQRES 12 C 295 ASP VAL ASN PHE ASP GLY ARG VAL SER PHE LEU GLU TYR SEQRES 13 C 295 LEU LEU TYR GLN TYR LYS ASP PHE ALA ASN PRO ALA ASP SEQRES 14 C 295 PHE CYS THR ARG SER MET ASN HIS ASP GLU HIS PRO GLU SEQRES 15 C 295 ILE LYS LYS ALA ARG LEU ALA LEU GLU GLU VAL ASN LYS SEQRES 16 C 295 ARG ILE ARG ALA TYR GLU GLU GLU LYS ALA ARG LEU THR SEQRES 17 C 295 GLU GLU SER LYS ILE PRO GLY VAL LYS GLY LEU GLY ALA SEQRES 18 C 295 THR ASN MET LEU ALA GLN ILE ASP SER GLY PRO LEU LYS SEQRES 19 C 295 GLU GLN LEU ASN PHE ALA LEU ILE SER ALA GLU ALA ALA SEQRES 20 C 295 VAL ARG THR ALA SER LYS LYS TYR GLY GLY ALA ALA TYR SEQRES 21 C 295 SER GLY GLY ALA GLY ASP ALA GLY ALA GLY SER SER ALA SEQRES 22 C 295 GLY ALA ILE TRP TRP MET ASN ARG ASP LEU GLU GLU LYS SEQRES 23 C 295 LYS LYS ARG TYR GLY PRO GLN LYS LYS HET CA A 301 1 HET CA B 301 1 HET CIT B 302 13 HET CA C 301 1 HETNAM CA CALCIUM ION HETNAM CIT CITRIC ACID FORMUL 4 CA 3(CA 2+) FORMUL 6 CIT C6 H8 O7 FORMUL 8 HOH *383(H2 O) HELIX 1 AA1 SER A 27 LYS A 39 1 13 HELIX 2 AA2 PRO A 41 SER A 58 1 18 HELIX 3 AA3 GLU A 60 VAL A 67 1 8 HELIX 4 AA4 VAL A 67 LYS A 80 1 14 HELIX 5 AA5 LEU A 84 TYR A 88 5 5 HELIX 6 AA6 PHE A 96 ASP A 112 1 17 HELIX 7 AA7 ASN A 115 TYR A 122 1 8 HELIX 8 AA8 PRO A 123 GLN A 126 5 4 HELIX 9 AA9 THR A 131 LYS A 142 1 12 HELIX 10 AB1 PHE A 153 TYR A 161 1 9 HELIX 11 AB2 ASN A 166 MET A 175 1 10 HELIX 12 AB3 HIS A 180 LYS A 212 1 33 HELIX 13 AB4 LEU A 219 ILE A 228 1 10 HELIX 14 AB5 GLY A 231 GLY A 256 1 26 HELIX 15 AB6 SER A 272 GLY A 291 1 20 HELIX 16 AB7 SER B 27 LEU B 40 1 14 HELIX 17 AB8 PRO B 41 SER B 58 1 18 HELIX 18 AB9 GLU B 60 VAL B 67 1 8 HELIX 19 AC1 VAL B 67 LYS B 80 1 14 HELIX 20 AC2 LEU B 84 TYR B 88 5 5 HELIX 21 AC3 PHE B 96 ASP B 112 1 17 HELIX 22 AC4 ASN B 115 TYR B 122 1 8 HELIX 23 AC5 PRO B 123 GLN B 126 5 4 HELIX 24 AC6 THR B 131 LYS B 142 1 12 HELIX 25 AC7 PHE B 153 TYR B 161 1 9 HELIX 26 AC8 ASN B 166 MET B 175 1 10 HELIX 27 AC9 HIS B 180 LYS B 212 1 33 HELIX 28 AD1 GLY B 215 ILE B 228 1 14 HELIX 29 AD2 GLY B 231 GLY B 256 1 26 HELIX 30 AD3 SER B 272 GLY B 291 1 20 HELIX 31 AD4 SER C 27 LYS C 39 1 13 HELIX 32 AD5 PRO C 41 SER C 58 1 18 HELIX 33 AD6 GLU C 60 VAL C 67 1 8 HELIX 34 AD7 VAL C 67 LYS C 80 1 14 HELIX 35 AD8 LEU C 84 TYR C 88 5 5 HELIX 36 AD9 PHE C 96 ASP C 112 1 17 HELIX 37 AE1 ASN C 115 TYR C 122 1 8 HELIX 38 AE2 PRO C 123 GLN C 126 5 4 HELIX 39 AE3 THR C 131 LYS C 142 1 12 HELIX 40 AE4 PHE C 153 TYR C 161 1 9 HELIX 41 AE5 ASN C 166 ASN C 176 1 11 HELIX 42 AE6 HIS C 180 SER C 211 1 32 HELIX 43 AE7 GLY C 215 ILE C 228 1 14 HELIX 44 AE8 GLY C 231 GLY C 256 1 26 HELIX 45 AE9 SER C 272 GLY C 291 1 20 SHEET 1 AA1 2 ASP A 93 ASP A 95 0 SHEET 2 AA1 2 ARG A 150 SER A 152 -1 O VAL A 151 N LEU A 94 SHEET 1 AA2 2 ASP B 93 ASP B 95 0 SHEET 2 AA2 2 ARG B 150 SER B 152 -1 O VAL B 151 N LEU B 94 SHEET 1 AA3 2 ASP C 93 ASP C 95 0 SHEET 2 AA3 2 ARG C 150 SER C 152 -1 O VAL C 151 N LEU C 94 LINK OD1 ASP A 144 CA CA A 301 1555 1555 2.33 LINK OD1 ASN A 146 CA CA A 301 1555 1555 2.42 LINK OD1 ASP A 148 CA CA A 301 1555 1555 2.47 LINK O ARG A 150 CA CA A 301 1555 1555 2.32 LINK OE1 GLU A 155 CA CA A 301 1555 1555 2.66 LINK OE2 GLU A 155 CA CA A 301 1555 1555 2.52 LINK CA CA A 301 O HOH A 426 1555 1555 2.39 LINK OD1 ASP B 144 CA CA B 301 1555 1555 2.41 LINK OD1 ASN B 146 CA CA B 301 1555 1555 2.36 LINK OD1 ASP B 148 CA CA B 301 1555 1555 2.43 LINK O ARG B 150 CA CA B 301 1555 1555 2.38 LINK OE1 GLU B 155 CA CA B 301 1555 1555 2.75 LINK OE2 GLU B 155 CA CA B 301 1555 1555 2.50 LINK CA CA B 301 O HOH B 500 1555 1555 2.51 LINK OD1 ASP C 144 CA CA C 301 1555 1555 2.34 LINK OD1 ASN C 146 CA CA C 301 1555 1555 2.39 LINK OD1 ASP C 148 CA CA C 301 1555 1555 2.45 LINK O ARG C 150 CA CA C 301 1555 1555 2.31 LINK OE1 GLU C 155 CA CA C 301 1555 1555 2.72 LINK OE2 GLU C 155 CA CA C 301 1555 1555 2.50 LINK CA CA C 301 O HOH C 432 1555 1555 2.43 CISPEP 1 VAL A 216 LYS A 217 0 2.02 CISPEP 2 LYS A 217 GLY A 218 0 -3.62 CISPEP 3 GLY C 270 SER C 271 0 -7.91 SITE 1 AC1 6 ASP A 144 ASN A 146 ASP A 148 ARG A 150 SITE 2 AC1 6 GLU A 155 HOH A 426 SITE 1 AC2 6 ASP B 144 ASN B 146 ASP B 148 ARG B 150 SITE 2 AC2 6 GLU B 155 HOH B 500 SITE 1 AC3 7 LYS A 136 ARG A 140 HOH A 443 LYS B 136 SITE 2 AC3 7 ARG B 140 LYS C 136 ARG C 140 SITE 1 AC4 6 ASP C 144 ASN C 146 ASP C 148 ARG C 150 SITE 2 AC4 6 GLU C 155 HOH C 432 CRYST1 78.161 85.244 135.744 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007367 0.00000