HEADER HYDROLASE/PEPTIDE 01-DEC-14 4X3P TITLE SIRT2 IN COMPLEX WITH A MYRISTOYL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 52-355; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE PROTEIN 2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE PRO-LYS-LYS-THR-GLY; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS SIRT2, MYRISTOYL PEPTIDE, HYDROLASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,W.ZHANG,Q.HAO REVDAT 4 13-NOV-24 4X3P 1 REMARK REVDAT 3 08-NOV-23 4X3P 1 REMARK REVDAT 2 20-APR-22 4X3P 1 JRNL REMARK REVDAT 1 13-JAN-16 4X3P 0 JRNL AUTH Y.WANG,Y.M.E.FUNG,W.ZHANG,B.HE,M.W.H.CHUNG,J.JIN,J.HU,H.LIN, JRNL AUTH 2 Q.HAO JRNL TITL DEACYLATION MECHANISM BY SIRT2 REVEALED IN THE JRNL TITL 2 1'-SH-2'-O-MYRISTOYL INTERMEDIATE STRUCTURE. JRNL REF CELL CHEM BIOL V. 24 339 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28286128 JRNL DOI 10.1016/J.CHEMBIOL.2017.02.007 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : 'MAXIMUM LIKELIHOOD' REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.0980 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.1220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.021 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2649 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2518 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3590 ; 1.446 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5851 ; 1.368 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;37.210 ;23.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;12.155 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.267 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2951 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 597 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1270 ; 1.137 ; 1.775 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1269 ; 1.122 ; 1.773 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1603 ; 1.898 ; 2.648 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7270 6.4177 20.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.0052 REMARK 3 T33: 0.0189 T12: -0.0090 REMARK 3 T13: -0.0040 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1809 L22: 0.1927 REMARK 3 L33: 0.4494 L12: -0.0021 REMARK 3 L13: -0.1305 L23: -0.1646 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.0027 S13: -0.0519 REMARK 3 S21: -0.0151 S22: -0.0150 S23: 0.0270 REMARK 3 S31: -0.0061 S32: 0.0132 S33: 0.0058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 4X3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29676 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M HEPES, 5% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.85000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 298 REMARK 465 MET A 299 REMARK 465 ILE A 300 REMARK 465 MET A 301 REMARK 465 GLY A 302 REMARK 465 LEU A 303 REMARK 465 GLY A 304 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 -48.00 73.07 REMARK 500 CYS A 200 -70.76 -123.31 REMARK 500 ASP A 231 41.17 -73.28 REMARK 500 TYR A 315 -8.66 -146.45 REMARK 500 ARG A 316 -4.92 -153.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 110.2 REMARK 620 3 CYS A 221 SG 111.6 109.2 REMARK 620 4 CYS A 224 SG 95.7 116.7 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CNA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3LX C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X3O RELATED DB: PDB DBREF 4X3P A 52 355 UNP Q8IXJ6 SIR2_HUMAN 52 355 DBREF 4X3P C 7 11 PDB 4X3P 4X3P 7 11 SEQRES 1 A 304 GLY SER GLN LYS GLU ARG LEU LEU ASP GLU LEU THR LEU SEQRES 2 A 304 GLU GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG SEQRES 3 A 304 ARG VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER SEQRES 4 A 304 ALA GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU SEQRES 5 A 304 TYR ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU SEQRES 6 A 304 ALA ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU SEQRES 7 A 304 PRO PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN SEQRES 8 A 304 PHE LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU SEQRES 9 A 304 LYS ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN SEQRES 10 A 304 ILE ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU SEQRES 11 A 304 ASP LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS SEQRES 12 A 304 CYS VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER SEQRES 13 A 304 TRP MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS SEQRES 14 A 304 CYS GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL SEQRES 15 A 304 PHE PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS SEQRES 16 A 304 MET GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL SEQRES 17 A 304 MET GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU SEQRES 18 A 304 ILE SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE SEQRES 19 A 304 ASN LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY SEQRES 20 A 304 MET ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER SEQRES 21 A 304 LYS LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS SEQRES 22 A 304 ASP GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP SEQRES 23 A 304 LYS LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SEQRES 24 A 304 SER ILE ASP ALA GLN SEQRES 1 C 5 PRO LYS LYS THR GLY HET ZN A 401 1 HET EDO A 402 4 HET CNA A 403 44 HET 3LX C 101 14 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CNA CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 3LX TRIDECANETHIAL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN ZN 2+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 CNA C22 H30 N7 O13 P2 1+ FORMUL 6 3LX C13 H26 S FORMUL 7 HOH *257(H2 O) HELIX 1 AA1 THR A 63 GLN A 72 1 10 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 GLY A 102 ASN A 106 5 5 HELIX 4 AA4 LEU A 107 HIS A 111 5 5 HELIX 5 AA5 TYR A 114 PHE A 119 5 6 HELIX 6 AA6 GLU A 120 HIS A 127 1 8 HELIX 7 AA7 PRO A 128 TYR A 139 1 12 HELIX 8 AA8 THR A 146 LYS A 158 1 13 HELIX 9 AA9 THR A 171 GLY A 177 1 7 HELIX 10 AB1 LEU A 206 GLU A 216 1 11 HELIX 11 AB2 PRO A 240 PHE A 251 1 12 HELIX 12 AB3 PRO A 268 ALA A 276 5 9 HELIX 13 AB4 GLU A 323 LEU A 335 1 13 HELIX 14 AB5 TRP A 337 ALA A 354 1 18 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N CYS A 164 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N ILE A 80 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O ILE A 285 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O VAL A 318 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O LYS A 229 N HIS A 194 LINK NZ LYS C 9 C1 3LX C 101 1555 1555 1.28 LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.33 CISPEP 1 GLN A 267 PRO A 268 0 3.45 SITE 1 AC1 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224 SITE 1 AC2 2 TRP A 320 LEU A 321 SITE 1 AC3 26 GLY A 84 ALA A 85 GLY A 86 THR A 89 SITE 2 AC3 26 PRO A 94 ASP A 95 PHE A 96 ARG A 97 SITE 3 AC3 26 GLN A 167 ASN A 168 ILE A 169 ASP A 170 SITE 4 AC3 26 HIS A 187 GLY A 261 THR A 262 SER A 263 SITE 5 AC3 26 ASN A 286 LYS A 287 GLU A 288 GLY A 322 SITE 6 AC3 26 GLU A 323 CYS A 324 HOH A 552 HOH A 564 SITE 7 AC3 26 HOH A 622 3LX C 101 SITE 1 AC4 5 PHE A 96 LEU A 138 VAL A 233 CNA A 403 SITE 2 AC4 5 LYS C 9 CRYST1 37.606 77.700 56.473 90.00 97.73 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026592 0.000000 0.003609 0.00000 SCALE2 0.000000 0.012870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017870 0.00000