HEADER TRANSFERASE 04-DEC-14 4X58 TITLE ANTHRANILATE PHOSPHORIBOSYL TRANSFERASE VARIANT N138A FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH PRPP AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: TRPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, ANTHRANILIC ACIDS, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, MAGNESIUM, TRYPTOPHAN, MUTATION, KEYWDS 3 TRANSFERASE, MAGNESIUM BINDING, PHOSPHORIBOSYL PYROPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR T.V.M.COOKSON,G.L.EVANS,E.J.PARKER,J.S.LOTT REVDAT 3 27-SEP-23 4X58 1 HETSYN REVDAT 2 29-JUL-20 4X58 1 COMPND JRNL REMARK HETNAM REVDAT 2 2 1 SITE REVDAT 1 25-NOV-15 4X58 0 JRNL AUTH T.V.COOKSON,G.L.EVANS,A.CASTELL,E.N.BAKER,J.S.LOTT, JRNL AUTH 2 E.J.PARKER JRNL TITL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS ANTHRANILATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE VARIANTS REVEAL THE CONFORMATIONAL JRNL TITL 3 CHANGES THAT FACILITATE DELIVERY OF THE SUBSTRATE TO THE JRNL TITL 4 ACTIVE SITE. JRNL REF BIOCHEMISTRY V. 54 6082 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26356348 JRNL DOI 10.1021/ACS.BIOCHEM.5B00612 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 65664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5101 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4910 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6966 ; 1.161 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11183 ; 0.719 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 693 ; 5.098 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;32.392 ;22.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ;12.106 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 817 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5926 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1157 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3903 7.9524 38.1948 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0583 REMARK 3 T33: 0.0294 T12: -0.0059 REMARK 3 T13: 0.0166 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0954 L22: 0.6862 REMARK 3 L33: 0.2524 L12: 0.1128 REMARK 3 L13: 0.1486 L23: 0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0002 S13: -0.0104 REMARK 3 S21: -0.0506 S22: 0.0292 S23: 0.0327 REMARK 3 S31: -0.0193 S32: 0.0311 S33: -0.0232 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2162 -27.4424 7.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.0227 T22: 0.0538 REMARK 3 T33: 0.0142 T12: -0.0154 REMARK 3 T13: 0.0161 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.2313 L22: 0.5366 REMARK 3 L33: 0.1768 L12: 0.0436 REMARK 3 L13: 0.1508 L23: 0.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0267 S13: -0.0221 REMARK 3 S21: 0.0314 S22: 0.0116 S23: 0.0257 REMARK 3 S31: -0.0006 S32: 0.0325 S33: -0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 94.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 1.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE MALATE, PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.36950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.03350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.36950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.03350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 514 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 VAL B 24 REMARK 465 ASP B 111 REMARK 465 GLY B 112 REMARK 465 VAL B 113 REMARK 465 ASN B 114 REMARK 465 ALA B 141 REMARK 465 SER B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 24 CG1 CG2 REMARK 470 ASN A 114 CG OD1 ND2 REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 ARG A 365 NE CZ NH1 NH2 REMARK 470 SER B 143 OG REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 SER B 145 OG REMARK 470 PHE B 223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 332 OG REMARK 470 ARG B 333 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 365 NE CZ NH1 NH2 REMARK 470 GLN B 369 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 402 O HOH A 607 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 102.43 96.31 REMARK 500 ASP A 251 47.48 -88.39 REMARK 500 THR A 257 -166.52 -172.42 REMARK 500 ARG B 42 128.73 -39.21 REMARK 500 SER B 145 92.08 95.32 REMARK 500 ASP B 159 79.06 -100.89 REMARK 500 ASP B 251 43.33 -91.50 REMARK 500 THR B 257 -163.94 -170.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 119 OG REMARK 620 2 GLU A 252 OE1 98.5 REMARK 620 3 PRP A 405 O2A 89.2 172.2 REMARK 620 4 PRP A 405 O3B 88.8 89.1 90.3 REMARK 620 5 HOH A 629 O 176.6 83.3 89.0 94.1 REMARK 620 6 HOH A 631 O 79.6 85.9 96.3 166.5 97.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 GLU A 252 OE1 94.4 REMARK 620 3 HOH A 629 O 80.9 76.8 REMARK 620 4 HOH A 632 O 176.9 86.2 102.2 REMARK 620 5 HOH A 633 O 85.6 111.3 164.8 91.4 REMARK 620 6 HOH A 634 O 79.1 161.7 85.2 101.2 85.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X59 RELATED DB: PDB REMARK 900 RELATED ID: 4X5A RELATED DB: PDB REMARK 900 RELATED ID: 4X5B RELATED DB: PDB REMARK 900 RELATED ID: 4X5C RELATED DB: PDB REMARK 900 RELATED ID: 4X5D RELATED DB: PDB REMARK 900 RELATED ID: 4X5E RELATED DB: PDB DBREF 4X58 A 1 370 UNP A5U4M0 TRPD_MYCTA 1 370 DBREF 4X58 B 1 370 UNP A5U4M0 TRPD_MYCTA 1 370 SEQADV 4X58 LEU A -7 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 GLU A -6 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS A -5 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS A -4 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS A -3 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS A -2 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS A -1 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS A 0 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 ALA A 138 UNP A5U4M0 ASN 138 ENGINEERED MUTATION SEQADV 4X58 LEU B -7 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 GLU B -6 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS B -5 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS B -4 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS B -3 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS B -2 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS B -1 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 HIS B 0 UNP A5U4M0 EXPRESSION TAG SEQADV 4X58 ALA B 138 UNP A5U4M0 ASN 138 ENGINEERED MUTATION SEQRES 1 A 378 LEU GLU HIS HIS HIS HIS HIS HIS MET ALA LEU SER ALA SEQRES 2 A 378 GLU GLY SER SER GLY GLY SER ARG GLY GLY SER PRO LYS SEQRES 3 A 378 ALA GLU ALA ALA SER VAL PRO SER TRP PRO GLN ILE LEU SEQRES 4 A 378 GLY ARG LEU THR ASP ASN ARG ASP LEU ALA ARG GLY GLN SEQRES 5 A 378 ALA ALA TRP ALA MET ASP GLN ILE MET THR GLY ASN ALA SEQRES 6 A 378 ARG PRO ALA GLN ILE ALA ALA PHE ALA VAL ALA MET THR SEQRES 7 A 378 MET LYS ALA PRO THR ALA ASP GLU VAL GLY GLU LEU ALA SEQRES 8 A 378 GLY VAL MET LEU SER HIS ALA HIS PRO LEU PRO ALA ASP SEQRES 9 A 378 THR VAL PRO ASP ASP ALA VAL ASP VAL VAL GLY THR GLY SEQRES 10 A 378 GLY ASP GLY VAL ASN THR VAL ASN LEU SER THR MET ALA SEQRES 11 A 378 ALA ILE VAL VAL ALA ALA ALA GLY VAL PRO VAL VAL LYS SEQRES 12 A 378 HIS GLY ALA ARG ALA ALA SER SER LEU SER GLY GLY ALA SEQRES 13 A 378 ASP THR LEU GLU ALA LEU GLY VAL ARG ILE ASP LEU GLY SEQRES 14 A 378 PRO ASP LEU VAL ALA ARG SER LEU ALA GLU VAL GLY ILE SEQRES 15 A 378 GLY PHE CYS PHE ALA PRO ARG PHE HIS PRO SER TYR ARG SEQRES 16 A 378 HIS ALA ALA ALA VAL ARG ARG GLU ILE GLY VAL PRO THR SEQRES 17 A 378 VAL PHE ASN LEU LEU GLY PRO LEU THR ASN PRO ALA ARG SEQRES 18 A 378 PRO ARG ALA GLY LEU ILE GLY CYS ALA PHE ALA ASP LEU SEQRES 19 A 378 ALA GLU VAL MET ALA GLY VAL PHE ALA ALA ARG ARG SER SEQRES 20 A 378 SER VAL LEU VAL VAL HIS GLY ASP ASP GLY LEU ASP GLU SEQRES 21 A 378 LEU THR THR THR THR THR SER THR ILE TRP ARG VAL ALA SEQRES 22 A 378 ALA GLY SER VAL ASP LYS LEU THR PHE ASP PRO ALA GLY SEQRES 23 A 378 PHE GLY PHE ALA ARG ALA GLN LEU ASP GLN LEU ALA GLY SEQRES 24 A 378 GLY ASP ALA GLN ALA ASN ALA ALA ALA VAL ARG ALA VAL SEQRES 25 A 378 LEU GLY GLY ALA ARG GLY PRO VAL ARG ASP ALA VAL VAL SEQRES 26 A 378 LEU ASN ALA ALA GLY ALA ILE VAL ALA HIS ALA GLY LEU SEQRES 27 A 378 SER SER ARG ALA GLU TRP LEU PRO ALA TRP GLU GLU GLY SEQRES 28 A 378 LEU ARG ARG ALA SER ALA ALA ILE ASP THR GLY ALA ALA SEQRES 29 A 378 GLU GLN LEU LEU ALA ARG TRP VAL ARG PHE GLY ARG GLN SEQRES 30 A 378 ILE SEQRES 1 B 378 LEU GLU HIS HIS HIS HIS HIS HIS MET ALA LEU SER ALA SEQRES 2 B 378 GLU GLY SER SER GLY GLY SER ARG GLY GLY SER PRO LYS SEQRES 3 B 378 ALA GLU ALA ALA SER VAL PRO SER TRP PRO GLN ILE LEU SEQRES 4 B 378 GLY ARG LEU THR ASP ASN ARG ASP LEU ALA ARG GLY GLN SEQRES 5 B 378 ALA ALA TRP ALA MET ASP GLN ILE MET THR GLY ASN ALA SEQRES 6 B 378 ARG PRO ALA GLN ILE ALA ALA PHE ALA VAL ALA MET THR SEQRES 7 B 378 MET LYS ALA PRO THR ALA ASP GLU VAL GLY GLU LEU ALA SEQRES 8 B 378 GLY VAL MET LEU SER HIS ALA HIS PRO LEU PRO ALA ASP SEQRES 9 B 378 THR VAL PRO ASP ASP ALA VAL ASP VAL VAL GLY THR GLY SEQRES 10 B 378 GLY ASP GLY VAL ASN THR VAL ASN LEU SER THR MET ALA SEQRES 11 B 378 ALA ILE VAL VAL ALA ALA ALA GLY VAL PRO VAL VAL LYS SEQRES 12 B 378 HIS GLY ALA ARG ALA ALA SER SER LEU SER GLY GLY ALA SEQRES 13 B 378 ASP THR LEU GLU ALA LEU GLY VAL ARG ILE ASP LEU GLY SEQRES 14 B 378 PRO ASP LEU VAL ALA ARG SER LEU ALA GLU VAL GLY ILE SEQRES 15 B 378 GLY PHE CYS PHE ALA PRO ARG PHE HIS PRO SER TYR ARG SEQRES 16 B 378 HIS ALA ALA ALA VAL ARG ARG GLU ILE GLY VAL PRO THR SEQRES 17 B 378 VAL PHE ASN LEU LEU GLY PRO LEU THR ASN PRO ALA ARG SEQRES 18 B 378 PRO ARG ALA GLY LEU ILE GLY CYS ALA PHE ALA ASP LEU SEQRES 19 B 378 ALA GLU VAL MET ALA GLY VAL PHE ALA ALA ARG ARG SER SEQRES 20 B 378 SER VAL LEU VAL VAL HIS GLY ASP ASP GLY LEU ASP GLU SEQRES 21 B 378 LEU THR THR THR THR THR SER THR ILE TRP ARG VAL ALA SEQRES 22 B 378 ALA GLY SER VAL ASP LYS LEU THR PHE ASP PRO ALA GLY SEQRES 23 B 378 PHE GLY PHE ALA ARG ALA GLN LEU ASP GLN LEU ALA GLY SEQRES 24 B 378 GLY ASP ALA GLN ALA ASN ALA ALA ALA VAL ARG ALA VAL SEQRES 25 B 378 LEU GLY GLY ALA ARG GLY PRO VAL ARG ASP ALA VAL VAL SEQRES 26 B 378 LEU ASN ALA ALA GLY ALA ILE VAL ALA HIS ALA GLY LEU SEQRES 27 B 378 SER SER ARG ALA GLU TRP LEU PRO ALA TRP GLU GLU GLY SEQRES 28 B 378 LEU ARG ARG ALA SER ALA ALA ILE ASP THR GLY ALA ALA SEQRES 29 B 378 GLU GLN LEU LEU ALA ARG TRP VAL ARG PHE GLY ARG GLN SEQRES 30 B 378 ILE HET MLT A 401 9 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET PRP A 405 22 HET MG A 406 1 HET MG A 407 1 HET GOL B 401 6 HET IMD B 402 5 HETNAM MLT D-MALATE HETNAM GOL GLYCEROL HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM MG MAGNESIUM ION HETNAM IMD IMIDAZOLE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 3 MLT C4 H6 O5 FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 PRP C5 H13 O14 P3 FORMUL 8 MG 2(MG 2+) FORMUL 11 IMD C3 H5 N2 1+ FORMUL 12 HOH *274(H2 O) HELIX 1 AA1 SER A 26 ASP A 36 1 11 HELIX 2 AA2 GLY A 43 THR A 54 1 12 HELIX 3 AA3 ARG A 58 ALA A 73 1 16 HELIX 4 AA4 THR A 75 ALA A 90 1 16 HELIX 5 AA5 ASN A 117 ALA A 129 1 13 HELIX 6 AA6 GLY A 146 LEU A 154 1 9 HELIX 7 AA7 GLY A 161 GLY A 173 1 13 HELIX 8 AA8 ALA A 179 HIS A 183 1 5 HELIX 9 AA9 TYR A 186 GLY A 197 1 12 HELIX 10 AB1 THR A 200 ASN A 203 5 4 HELIX 11 AB2 LEU A 204 THR A 209 1 6 HELIX 12 AB3 LEU A 226 ARG A 237 1 12 HELIX 13 AB4 ASP A 275 GLY A 280 5 6 HELIX 14 AB5 GLN A 285 ALA A 290 5 6 HELIX 15 AB6 ASP A 293 GLY A 306 1 14 HELIX 16 AB7 GLY A 310 GLY A 329 1 20 HELIX 17 AB8 GLU A 335 THR A 353 1 19 HELIX 18 AB9 GLY A 354 ILE A 370 1 17 HELIX 19 AC1 SER B 26 ASP B 36 1 11 HELIX 20 AC2 GLY B 43 THR B 54 1 12 HELIX 21 AC3 ARG B 58 LYS B 72 1 15 HELIX 22 AC4 THR B 75 ALA B 90 1 16 HELIX 23 AC5 VAL B 116 ALA B 129 1 14 HELIX 24 AC6 GLY B 147 LEU B 154 1 8 HELIX 25 AC7 GLY B 161 GLY B 173 1 13 HELIX 26 AC8 ALA B 179 HIS B 183 1 5 HELIX 27 AC9 TYR B 186 GLY B 197 1 12 HELIX 28 AD1 THR B 200 THR B 209 5 10 HELIX 29 AD2 PHE B 223 ARG B 237 1 15 HELIX 30 AD3 ASP B 275 GLY B 280 5 6 HELIX 31 AD4 GLN B 285 ALA B 290 1 6 HELIX 32 AD5 ASP B 293 GLY B 306 1 14 HELIX 33 AD6 GLY B 310 GLY B 329 1 20 HELIX 34 AD7 GLU B 335 THR B 353 1 19 HELIX 35 AD8 GLY B 354 ILE B 370 1 17 SHEET 1 AA1 5 VAL A 103 GLY A 107 0 SHEET 2 AA1 5 ALA A 216 GLY A 220 1 O LEU A 218 N ASP A 104 SHEET 3 AA1 5 SER A 240 GLY A 246 1 O VAL A 244 N ILE A 219 SHEET 4 AA1 5 SER A 259 ALA A 265 -1 O VAL A 264 N VAL A 241 SHEET 5 AA1 5 SER A 268 PHE A 274 -1 O PHE A 274 N SER A 259 SHEET 1 AA2 2 VAL A 133 GLY A 137 0 SHEET 2 AA2 2 ILE A 174 PHE A 178 1 O GLY A 175 N LYS A 135 SHEET 1 AA3 5 VAL B 103 GLY B 107 0 SHEET 2 AA3 5 ALA B 216 GLY B 220 1 O GLY B 220 N VAL B 106 SHEET 3 AA3 5 SER B 240 GLY B 246 1 O LEU B 242 N ILE B 219 SHEET 4 AA3 5 SER B 259 ALA B 265 -1 O TRP B 262 N VAL B 243 SHEET 5 AA3 5 SER B 268 PHE B 274 -1 O PHE B 274 N SER B 259 SHEET 1 AA4 2 VAL B 133 GLY B 137 0 SHEET 2 AA4 2 ILE B 174 PHE B 178 1 O CYS B 177 N LYS B 135 LINK OG SER A 119 MG MG A 407 1555 1555 2.17 LINK OD1 ASP A 251 MG MG A 406 1555 1555 2.43 LINK OE1 GLU A 252 MG MG A 406 1555 1555 2.15 LINK OE1 GLU A 252 MG MG A 407 1555 1555 2.14 LINK O2A PRP A 405 MG MG A 407 1555 1555 2.08 LINK O3B PRP A 405 MG MG A 407 1555 1555 2.03 LINK MG MG A 406 O HOH A 629 1555 1555 2.39 LINK MG MG A 406 O HOH A 632 1555 1555 2.30 LINK MG MG A 406 O HOH A 633 1555 1555 1.97 LINK MG MG A 406 O HOH A 634 1555 1555 2.21 LINK MG MG A 407 O HOH A 629 1555 1555 2.11 LINK MG MG A 407 O HOH A 631 1555 1555 2.08 CRYST1 94.739 78.067 101.331 90.00 111.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010555 0.000000 0.004115 0.00000 SCALE2 0.000000 0.012810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010592 0.00000