HEADER LIGASE 05-DEC-14 4X5O TITLE HUMAN HISTIDINE TRNA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE--TRNA LIGASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTIDYL-TRNA SYNTHETASE,HISRS; COMPND 5 EC: 6.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HARS, HRS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE, TRNA, SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.K.KIM,Y.H.JEON REVDAT 3 08-NOV-23 4X5O 1 REMARK REVDAT 2 05-FEB-20 4X5O 1 REMARK REVDAT 1 25-NOV-15 4X5O 0 JRNL AUTH Y.K.KIM,J.E.CHANG,S.KIM,Y.H.JEON JRNL TITL STRUCTURAL CHARACTERISTICS OF HUMAN HISTIDYL-TRNA SYNTHETASE JRNL REF BIODESIGN V. 2 142 2015 JRNL REFN ESSN 2288-7105 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 30399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0224 - 6.7225 0.97 2215 154 0.2488 0.2673 REMARK 3 2 6.7225 - 5.3467 0.99 2123 148 0.2600 0.3131 REMARK 3 3 5.3467 - 4.6741 0.99 2093 147 0.2127 0.2925 REMARK 3 4 4.6741 - 4.2481 0.99 2070 144 0.2058 0.3030 REMARK 3 5 4.2481 - 3.9445 0.99 2068 144 0.2274 0.3126 REMARK 3 6 3.9445 - 3.7124 0.99 2050 143 0.2332 0.2962 REMARK 3 7 3.7124 - 3.5268 0.99 2030 142 0.2533 0.3185 REMARK 3 8 3.5268 - 3.3735 0.98 2021 140 0.2524 0.3350 REMARK 3 9 3.3735 - 3.2438 0.98 2024 141 0.2742 0.3842 REMARK 3 10 3.2438 - 3.1320 0.98 2002 141 0.2793 0.3634 REMARK 3 11 3.1320 - 3.0342 0.98 2006 139 0.2945 0.3512 REMARK 3 12 3.0342 - 2.9476 0.97 1976 137 0.3028 0.4118 REMARK 3 13 2.9476 - 2.8700 0.95 1913 134 0.3018 0.3908 REMARK 3 14 2.8700 - 2.8001 0.89 1827 127 0.2987 0.3771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6332 REMARK 3 ANGLE : 0.905 8513 REMARK 3 CHIRALITY : 0.031 970 REMARK 3 PLANARITY : 0.003 1087 REMARK 3 DIHEDRAL : 16.007 2439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7-7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KMM REMARK 200 REMARK 200 REMARK: STICK-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.29 MM POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 18 % POLYETHYLENE GLYCOL 3350, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.20450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.83450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.83450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.60225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.83450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.83450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 190.80675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.83450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.83450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.60225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.83450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.83450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 190.80675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 127.20450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 LYS A 12 REMARK 465 LEU A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 VAL A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 LYS A 22 REMARK 465 GLN A 23 REMARK 465 GLN A 24 REMARK 465 LYS A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 GLU A 29 REMARK 465 LEU A 30 REMARK 465 ILE A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 GLU A 34 REMARK 465 VAL A 35 REMARK 465 ALA A 36 REMARK 465 LYS A 37 REMARK 465 LEU A 38 REMARK 465 LEU A 39 REMARK 465 LYS A 40 REMARK 465 LEU A 41 REMARK 465 LYS A 42 REMARK 465 ALA A 43 REMARK 465 GLN A 44 REMARK 465 LEU A 45 REMARK 465 GLY A 46 REMARK 465 PRO A 47 REMARK 465 ASP A 48 REMARK 465 GLU A 49 REMARK 465 SER A 50 REMARK 465 LYS A 51 REMARK 465 GLN A 52 REMARK 465 LYS A 53 REMARK 465 TYR A 107 REMARK 465 GLY A 108 REMARK 465 GLU A 109 REMARK 465 ASP A 110 REMARK 465 GLN A 342 REMARK 465 THR A 343 REMARK 465 PRO A 344 REMARK 465 ALA A 345 REMARK 465 GLN A 346 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 GLU A 349 REMARK 465 GLU A 350 REMARK 465 PRO A 351 REMARK 465 LEU A 352 REMARK 465 GLY A 353 REMARK 465 GLN A 504 REMARK 465 PRO A 505 REMARK 465 LEU A 506 REMARK 465 CYS A 507 REMARK 465 ILE A 508 REMARK 465 CYS A 509 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 GLU B 8 REMARK 465 GLU B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 LYS B 12 REMARK 465 LEU B 13 REMARK 465 GLN B 14 REMARK 465 GLY B 15 REMARK 465 GLU B 16 REMARK 465 ARG B 17 REMARK 465 VAL B 18 REMARK 465 ARG B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 21 REMARK 465 LYS B 22 REMARK 465 GLN B 23 REMARK 465 GLN B 24 REMARK 465 LYS B 25 REMARK 465 ALA B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 GLU B 29 REMARK 465 LEU B 30 REMARK 465 ILE B 31 REMARK 465 GLU B 32 REMARK 465 GLU B 33 REMARK 465 GLU B 34 REMARK 465 VAL B 35 REMARK 465 ALA B 36 REMARK 465 LYS B 37 REMARK 465 LEU B 38 REMARK 465 LEU B 39 REMARK 465 LYS B 40 REMARK 465 LEU B 41 REMARK 465 LYS B 42 REMARK 465 ALA B 43 REMARK 465 GLN B 44 REMARK 465 LEU B 45 REMARK 465 GLY B 46 REMARK 465 PRO B 47 REMARK 465 ASP B 48 REMARK 465 GLU B 49 REMARK 465 SER B 50 REMARK 465 LYS B 51 REMARK 465 GLN B 52 REMARK 465 LYS B 53 REMARK 465 LYS B 106 REMARK 465 TYR B 107 REMARK 465 GLY B 108 REMARK 465 GLU B 109 REMARK 465 ASN B 160 REMARK 465 PRO B 161 REMARK 465 ALA B 162 REMARK 465 MET B 163 REMARK 465 THR B 164 REMARK 465 ARG B 165 REMARK 465 GLY B 166 REMARK 465 ARG B 167 REMARK 465 GLY B 219 REMARK 465 MET B 220 REMARK 465 PHE B 221 REMARK 465 ALA B 222 REMARK 465 ILE B 223 REMARK 465 CYS B 224 REMARK 465 GLY B 225 REMARK 465 VAL B 226 REMARK 465 SER B 227 REMARK 465 ASP B 228 REMARK 465 SER B 229 REMARK 465 LYS B 230 REMARK 465 PHE B 231 REMARK 465 ARG B 232 REMARK 465 THR B 233 REMARK 465 ILE B 234 REMARK 465 CYS B 235 REMARK 465 SER B 236 REMARK 465 SER B 237 REMARK 465 VAL B 238 REMARK 465 ASP B 239 REMARK 465 LYS B 240 REMARK 465 LEU B 241 REMARK 465 ASP B 242 REMARK 465 LYS B 243 REMARK 465 VAL B 244 REMARK 465 SER B 245 REMARK 465 TRP B 246 REMARK 465 GLU B 247 REMARK 465 GLU B 248 REMARK 465 VAL B 249 REMARK 465 LYS B 250 REMARK 465 ASN B 251 REMARK 465 GLU B 252 REMARK 465 MET B 253 REMARK 465 VAL B 254 REMARK 465 GLY B 255 REMARK 465 GLU B 256 REMARK 465 LYS B 257 REMARK 465 GLY B 258 REMARK 465 LEU B 259 REMARK 465 ALA B 260 REMARK 465 PRO B 261 REMARK 465 GLU B 262 REMARK 465 VAL B 263 REMARK 465 ALA B 264 REMARK 465 ASP B 265 REMARK 465 ARG B 266 REMARK 465 ILE B 267 REMARK 465 GLY B 268 REMARK 465 ASP B 269 REMARK 465 TYR B 270 REMARK 465 VAL B 271 REMARK 465 GLN B 272 REMARK 465 GLN B 273 REMARK 465 HIS B 274 REMARK 465 GLY B 275 REMARK 465 GLY B 276 REMARK 465 VAL B 277 REMARK 465 SER B 278 REMARK 465 LEU B 279 REMARK 465 VAL B 280 REMARK 465 GLU B 281 REMARK 465 GLN B 282 REMARK 465 LEU B 283 REMARK 465 LEU B 284 REMARK 465 GLN B 285 REMARK 465 ASP B 286 REMARK 465 PRO B 287 REMARK 465 LYS B 288 REMARK 465 LEU B 289 REMARK 465 SER B 290 REMARK 465 GLN B 291 REMARK 465 ASN B 292 REMARK 465 LYS B 293 REMARK 465 THR B 343 REMARK 465 PRO B 344 REMARK 465 ALA B 345 REMARK 465 GLN B 346 REMARK 465 ALA B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLU B 350 REMARK 465 PRO B 351 REMARK 465 LEU B 352 REMARK 465 GLY B 353 REMARK 465 VAL B 354 REMARK 465 GLY B 503 REMARK 465 GLN B 504 REMARK 465 PRO B 505 REMARK 465 LEU B 506 REMARK 465 CYS B 507 REMARK 465 ILE B 508 REMARK 465 CYS B 509 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 THR A 164 OG1 CG2 REMARK 470 VAL A 354 CG1 CG2 REMARK 470 ARG A 500 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 130 OG1 THR A 132 2.17 REMARK 500 OH TYR B 336 O GLY B 381 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 184 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU B 366 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 150.99 -45.52 REMARK 500 LYS A 60 104.81 -50.40 REMARK 500 LEU A 113 55.90 -91.75 REMARK 500 GLN A 120 6.10 58.90 REMARK 500 THR A 164 -39.23 -130.04 REMARK 500 ARG A 165 -126.39 -132.37 REMARK 500 PRO A 184 -91.20 -24.47 REMARK 500 VAL A 244 -157.68 -122.29 REMARK 500 MET A 253 -88.29 -40.24 REMARK 500 ALA A 325 81.88 -152.84 REMARK 500 TYR A 330 -71.22 -151.60 REMARK 500 MET A 369 30.04 -86.22 REMARK 500 GLU A 401 58.58 35.93 REMARK 500 TYR A 442 47.22 -80.62 REMARK 500 LYS B 118 -144.70 -68.77 REMARK 500 GLN B 120 -35.23 53.74 REMARK 500 LYS B 143 75.54 51.95 REMARK 500 PRO B 184 -120.96 4.10 REMARK 500 ALA B 295 31.91 -75.22 REMARK 500 LEU B 324 109.45 -59.82 REMARK 500 LEU B 328 35.09 -150.51 REMARK 500 ALA B 359 -158.50 -150.91 REMARK 500 MET B 369 -74.14 -50.94 REMARK 500 GLU B 401 -13.72 66.59 REMARK 500 THR B 482 -71.31 -72.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 329 TYR A 330 -141.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 4X5O A 1 509 UNP P12081 SYHC_HUMAN 1 509 DBREF 4X5O B 1 509 UNP P12081 SYHC_HUMAN 1 509 SEQRES 1 A 509 MET ALA GLU ARG ALA ALA LEU GLU GLU LEU VAL LYS LEU SEQRES 2 A 509 GLN GLY GLU ARG VAL ARG GLY LEU LYS GLN GLN LYS ALA SEQRES 3 A 509 SER ALA GLU LEU ILE GLU GLU GLU VAL ALA LYS LEU LEU SEQRES 4 A 509 LYS LEU LYS ALA GLN LEU GLY PRO ASP GLU SER LYS GLN SEQRES 5 A 509 LYS PHE VAL LEU LYS THR PRO LYS GLY THR ARG ASP TYR SEQRES 6 A 509 SER PRO ARG GLN MET ALA VAL ARG GLU LYS VAL PHE ASP SEQRES 7 A 509 VAL ILE ILE ARG CYS PHE LYS ARG HIS GLY ALA GLU VAL SEQRES 8 A 509 ILE ASP THR PRO VAL PHE GLU LEU LYS GLU THR LEU MET SEQRES 9 A 509 GLY LYS TYR GLY GLU ASP SER LYS LEU ILE TYR ASP LEU SEQRES 10 A 509 LYS ASP GLN GLY GLY GLU LEU LEU SER LEU ARG TYR ASP SEQRES 11 A 509 LEU THR VAL PRO PHE ALA ARG TYR LEU ALA MET ASN LYS SEQRES 12 A 509 LEU THR ASN ILE LYS ARG TYR HIS ILE ALA LYS VAL TYR SEQRES 13 A 509 ARG ARG ASP ASN PRO ALA MET THR ARG GLY ARG TYR ARG SEQRES 14 A 509 GLU PHE TYR GLN CYS ASP PHE ASP ILE ALA GLY ASN PHE SEQRES 15 A 509 ASP PRO MET ILE PRO ASP ALA GLU CYS LEU LYS ILE MET SEQRES 16 A 509 CYS GLU ILE LEU SER SER LEU GLN ILE GLY ASP PHE LEU SEQRES 17 A 509 VAL LYS VAL ASN ASP ARG ARG ILE LEU ASP GLY MET PHE SEQRES 18 A 509 ALA ILE CYS GLY VAL SER ASP SER LYS PHE ARG THR ILE SEQRES 19 A 509 CYS SER SER VAL ASP LYS LEU ASP LYS VAL SER TRP GLU SEQRES 20 A 509 GLU VAL LYS ASN GLU MET VAL GLY GLU LYS GLY LEU ALA SEQRES 21 A 509 PRO GLU VAL ALA ASP ARG ILE GLY ASP TYR VAL GLN GLN SEQRES 22 A 509 HIS GLY GLY VAL SER LEU VAL GLU GLN LEU LEU GLN ASP SEQRES 23 A 509 PRO LYS LEU SER GLN ASN LYS GLN ALA LEU GLU GLY LEU SEQRES 24 A 509 GLY ASP LEU LYS LEU LEU PHE GLU TYR LEU THR LEU PHE SEQRES 25 A 509 GLY ILE ASP ASP LYS ILE SER PHE ASP LEU SER LEU ALA SEQRES 26 A 509 ARG GLY LEU ASP TYR TYR THR GLY VAL ILE TYR GLU ALA SEQRES 27 A 509 VAL LEU LEU GLN THR PRO ALA GLN ALA GLY GLU GLU PRO SEQRES 28 A 509 LEU GLY VAL GLY SER VAL ALA ALA GLY GLY ARG TYR ASP SEQRES 29 A 509 GLY LEU VAL GLY MET PHE ASP PRO LYS GLY ARG LYS VAL SEQRES 30 A 509 PRO CYS VAL GLY LEU SER ILE GLY VAL GLU ARG ILE PHE SEQRES 31 A 509 SER ILE VAL GLU GLN ARG LEU GLU ALA LEU GLU GLU LYS SEQRES 32 A 509 ILE ARG THR THR GLU THR GLN VAL LEU VAL ALA SER ALA SEQRES 33 A 509 GLN LYS LYS LEU LEU GLU GLU ARG LEU LYS LEU VAL SER SEQRES 34 A 509 GLU LEU TRP ASP ALA GLY ILE LYS ALA GLU LEU LEU TYR SEQRES 35 A 509 LYS LYS ASN PRO LYS LEU LEU ASN GLN LEU GLN TYR CYS SEQRES 36 A 509 GLU GLU ALA GLY ILE PRO LEU VAL ALA ILE ILE GLY GLU SEQRES 37 A 509 GLN GLU LEU LYS ASP GLY VAL ILE LYS LEU ARG SER VAL SEQRES 38 A 509 THR SER ARG GLU GLU VAL ASP VAL ARG ARG GLU ASP LEU SEQRES 39 A 509 VAL GLU GLU ILE LYS ARG ARG THR GLY GLN PRO LEU CYS SEQRES 40 A 509 ILE CYS SEQRES 1 B 509 MET ALA GLU ARG ALA ALA LEU GLU GLU LEU VAL LYS LEU SEQRES 2 B 509 GLN GLY GLU ARG VAL ARG GLY LEU LYS GLN GLN LYS ALA SEQRES 3 B 509 SER ALA GLU LEU ILE GLU GLU GLU VAL ALA LYS LEU LEU SEQRES 4 B 509 LYS LEU LYS ALA GLN LEU GLY PRO ASP GLU SER LYS GLN SEQRES 5 B 509 LYS PHE VAL LEU LYS THR PRO LYS GLY THR ARG ASP TYR SEQRES 6 B 509 SER PRO ARG GLN MET ALA VAL ARG GLU LYS VAL PHE ASP SEQRES 7 B 509 VAL ILE ILE ARG CYS PHE LYS ARG HIS GLY ALA GLU VAL SEQRES 8 B 509 ILE ASP THR PRO VAL PHE GLU LEU LYS GLU THR LEU MET SEQRES 9 B 509 GLY LYS TYR GLY GLU ASP SER LYS LEU ILE TYR ASP LEU SEQRES 10 B 509 LYS ASP GLN GLY GLY GLU LEU LEU SER LEU ARG TYR ASP SEQRES 11 B 509 LEU THR VAL PRO PHE ALA ARG TYR LEU ALA MET ASN LYS SEQRES 12 B 509 LEU THR ASN ILE LYS ARG TYR HIS ILE ALA LYS VAL TYR SEQRES 13 B 509 ARG ARG ASP ASN PRO ALA MET THR ARG GLY ARG TYR ARG SEQRES 14 B 509 GLU PHE TYR GLN CYS ASP PHE ASP ILE ALA GLY ASN PHE SEQRES 15 B 509 ASP PRO MET ILE PRO ASP ALA GLU CYS LEU LYS ILE MET SEQRES 16 B 509 CYS GLU ILE LEU SER SER LEU GLN ILE GLY ASP PHE LEU SEQRES 17 B 509 VAL LYS VAL ASN ASP ARG ARG ILE LEU ASP GLY MET PHE SEQRES 18 B 509 ALA ILE CYS GLY VAL SER ASP SER LYS PHE ARG THR ILE SEQRES 19 B 509 CYS SER SER VAL ASP LYS LEU ASP LYS VAL SER TRP GLU SEQRES 20 B 509 GLU VAL LYS ASN GLU MET VAL GLY GLU LYS GLY LEU ALA SEQRES 21 B 509 PRO GLU VAL ALA ASP ARG ILE GLY ASP TYR VAL GLN GLN SEQRES 22 B 509 HIS GLY GLY VAL SER LEU VAL GLU GLN LEU LEU GLN ASP SEQRES 23 B 509 PRO LYS LEU SER GLN ASN LYS GLN ALA LEU GLU GLY LEU SEQRES 24 B 509 GLY ASP LEU LYS LEU LEU PHE GLU TYR LEU THR LEU PHE SEQRES 25 B 509 GLY ILE ASP ASP LYS ILE SER PHE ASP LEU SER LEU ALA SEQRES 26 B 509 ARG GLY LEU ASP TYR TYR THR GLY VAL ILE TYR GLU ALA SEQRES 27 B 509 VAL LEU LEU GLN THR PRO ALA GLN ALA GLY GLU GLU PRO SEQRES 28 B 509 LEU GLY VAL GLY SER VAL ALA ALA GLY GLY ARG TYR ASP SEQRES 29 B 509 GLY LEU VAL GLY MET PHE ASP PRO LYS GLY ARG LYS VAL SEQRES 30 B 509 PRO CYS VAL GLY LEU SER ILE GLY VAL GLU ARG ILE PHE SEQRES 31 B 509 SER ILE VAL GLU GLN ARG LEU GLU ALA LEU GLU GLU LYS SEQRES 32 B 509 ILE ARG THR THR GLU THR GLN VAL LEU VAL ALA SER ALA SEQRES 33 B 509 GLN LYS LYS LEU LEU GLU GLU ARG LEU LYS LEU VAL SER SEQRES 34 B 509 GLU LEU TRP ASP ALA GLY ILE LYS ALA GLU LEU LEU TYR SEQRES 35 B 509 LYS LYS ASN PRO LYS LEU LEU ASN GLN LEU GLN TYR CYS SEQRES 36 B 509 GLU GLU ALA GLY ILE PRO LEU VAL ALA ILE ILE GLY GLU SEQRES 37 B 509 GLN GLU LEU LYS ASP GLY VAL ILE LYS LEU ARG SER VAL SEQRES 38 B 509 THR SER ARG GLU GLU VAL ASP VAL ARG ARG GLU ASP LEU SEQRES 39 B 509 VAL GLU GLU ILE LYS ARG ARG THR GLY GLN PRO LEU CYS SEQRES 40 B 509 ILE CYS FORMUL 3 HOH *11(H2 O) HELIX 1 AA1 SER A 66 HIS A 87 1 22 HELIX 2 AA2 LEU A 131 ASN A 142 1 12 HELIX 3 AA3 MET A 185 LEU A 202 1 18 HELIX 4 AA4 ARG A 214 GLY A 225 1 12 HELIX 5 AA5 LYS A 230 ASP A 239 1 10 HELIX 6 AA6 LYS A 240 LYS A 243 5 4 HELIX 7 AA7 SER A 245 LYS A 257 1 13 HELIX 8 AA8 ALA A 260 GLN A 272 1 13 HELIX 9 AA9 GLY A 276 GLN A 285 1 10 HELIX 10 AB1 LYS A 288 GLN A 291 5 4 HELIX 11 AB2 ASN A 292 GLY A 313 1 22 HELIX 12 AB3 GLY A 385 ARG A 396 1 12 HELIX 13 AB4 LEU A 420 ALA A 434 1 15 HELIX 14 AB5 LYS A 447 GLY A 459 1 13 HELIX 15 AB6 GLY A 467 LYS A 472 1 6 HELIX 16 AB7 ARG A 491 LYS A 499 1 9 HELIX 17 AB8 SER B 66 HIS B 87 1 22 HELIX 18 AB9 THR B 132 LYS B 143 1 12 HELIX 19 AC1 MET B 185 GLN B 203 1 19 HELIX 20 AC2 ARG B 214 ASP B 218 1 5 HELIX 21 AC3 LEU B 296 PHE B 312 1 17 HELIX 22 AC4 GLY B 385 ALA B 399 1 15 HELIX 23 AC5 LEU B 420 ASP B 433 1 14 HELIX 24 AC6 LYS B 447 GLU B 457 1 11 HELIX 25 AC7 GLY B 467 LYS B 472 1 6 HELIX 26 AC8 ARG B 491 THR B 502 1 12 SHEET 1 AA1 9 GLU A 90 VAL A 91 0 SHEET 2 AA1 9 ILE A 147 TYR A 156 1 O LYS A 148 N GLU A 90 SHEET 3 AA1 9 GLU A 170 ALA A 179 -1 O ASP A 177 N ARG A 149 SHEET 4 AA1 9 CYS A 379 ILE A 384 -1 O VAL A 380 N ILE A 178 SHEET 5 AA1 9 SER A 356 ARG A 362 -1 N GLY A 361 O GLY A 381 SHEET 6 AA1 9 VAL A 334 LEU A 340 -1 N TYR A 336 O GLY A 360 SHEET 7 AA1 9 PHE A 207 ASP A 213 -1 N LYS A 210 O GLU A 337 SHEET 8 AA1 9 ILE A 318 ASP A 321 1 O SER A 319 N VAL A 209 SHEET 9 AA1 9 HIS A 274 GLY A 275 -1 N GLY A 275 O PHE A 320 SHEET 1 AA2 2 PHE A 97 LEU A 99 0 SHEET 2 AA2 2 LEU A 125 LEU A 127 -1 O SER A 126 N GLU A 98 SHEET 1 AA3 4 LEU A 412 SER A 415 0 SHEET 2 AA3 4 LEU A 462 ILE A 466 1 O ALA A 464 N ALA A 414 SHEET 3 AA3 4 VAL A 475 SER A 480 -1 O LYS A 477 N ILE A 465 SHEET 4 AA3 4 ASP A 488 ARG A 490 -1 O VAL A 489 N ILE A 476 SHEET 1 AA4 8 GLU B 90 VAL B 91 0 SHEET 2 AA4 8 ILE B 147 TYR B 156 1 O LYS B 148 N GLU B 90 SHEET 3 AA4 8 GLU B 170 ALA B 179 -1 O PHE B 171 N VAL B 155 SHEET 4 AA4 8 CYS B 379 ILE B 384 -1 O VAL B 380 N ILE B 178 SHEET 5 AA4 8 ALA B 358 ARG B 362 -1 N ALA B 359 O SER B 383 SHEET 6 AA4 8 VAL B 334 LEU B 341 -1 N ALA B 338 O ALA B 358 SHEET 7 AA4 8 ASP B 206 ASP B 213 -1 N ASP B 206 O LEU B 341 SHEET 8 AA4 8 ILE B 318 PHE B 320 1 O SER B 319 N VAL B 209 SHEET 1 AA5 2 PHE B 97 LEU B 99 0 SHEET 2 AA5 2 LEU B 125 LEU B 127 -1 O SER B 126 N GLU B 98 SHEET 1 AA6 5 ALA B 438 LEU B 440 0 SHEET 2 AA6 5 VAL B 411 ALA B 414 1 N VAL B 413 O GLU B 439 SHEET 3 AA6 5 LEU B 462 ILE B 465 1 O ALA B 464 N LEU B 412 SHEET 4 AA6 5 VAL B 475 SER B 480 -1 O ARG B 479 N VAL B 463 SHEET 5 AA6 5 GLU B 486 ARG B 490 -1 O VAL B 487 N LEU B 478 CISPEP 1 THR A 164 ARG A 165 0 12.02 CISPEP 2 ARG B 326 GLY B 327 0 -2.51 CRYST1 97.669 97.669 254.409 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010239 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003931 0.00000