HEADER IMMUNE SYSTEM 08-DEC-14 4X6E TITLE CD1A BINARY COMPLEX WITH LYSOPHOSPHATIDYLCHOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T-CELL SURFACE ANTIGEN T6/LEU-6,HTA1 THYMOCYTE ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1A; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CD1A, IMMUNE COMPLEX, LIPID ANTIGEN, TCR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.W.BIRKINSHAW,J.ROSSJOHN REVDAT 5 27-SEP-23 4X6E 1 SOURCE REMARK REVDAT 4 04-MAR-15 4X6E 1 TITLE REVDAT 3 25-FEB-15 4X6E 1 JRNL REVDAT 2 18-FEB-15 4X6E 1 JRNL REVDAT 1 28-JAN-15 4X6E 0 JRNL AUTH R.W.BIRKINSHAW,D.G.PELLICCI,T.Y.CHENG,A.N.KELLER, JRNL AUTH 2 M.SANDOVAL-ROMERO,S.GRAS,A.DE JONG,A.P.ULDRICH,D.B.MOODY, JRNL AUTH 3 D.I.GODFREY,J.ROSSJOHN JRNL TITL ALPHA BETA T CELL ANTIGEN RECEPTOR RECOGNITION OF CD1A JRNL TITL 2 PRESENTING SELF LIPID LIGANDS. JRNL REF NAT.IMMUNOL. V. 16 258 2015 JRNL REFN ESSN 1529-2916 JRNL PMID 25642819 JRNL DOI 10.1038/NI.3098 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 24659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3960 - 4.1987 0.98 3102 159 0.1574 0.1790 REMARK 3 2 4.1987 - 3.3331 0.99 2977 157 0.1608 0.2052 REMARK 3 3 3.3331 - 2.9120 0.99 2948 153 0.1887 0.2278 REMARK 3 4 2.9120 - 2.6458 0.99 2907 148 0.2149 0.2829 REMARK 3 5 2.6458 - 2.4562 0.99 2932 141 0.2153 0.2984 REMARK 3 6 2.4562 - 2.3114 0.99 2911 137 0.2219 0.3098 REMARK 3 7 2.3114 - 2.1956 0.99 2884 149 0.2327 0.3036 REMARK 3 8 2.1956 - 2.1001 0.96 2824 130 0.2556 0.3118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3107 REMARK 3 ANGLE : 1.150 4212 REMARK 3 CHIRALITY : 0.056 433 REMARK 3 PLANARITY : 0.005 541 REMARK 3 DIHEDRAL : 15.979 1124 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7794 106.0167 20.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.4428 T22: 0.3441 REMARK 3 T33: 0.4440 T12: 0.1376 REMARK 3 T13: -0.0237 T23: -0.1473 REMARK 3 L TENSOR REMARK 3 L11: 4.9353 L22: 2.6817 REMARK 3 L33: 6.1705 L12: 0.6982 REMARK 3 L13: -3.1376 L23: -0.7997 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: -0.2158 S13: 0.9516 REMARK 3 S21: 0.5139 S22: 0.1310 S23: -0.0934 REMARK 3 S31: -0.8312 S32: -0.5309 S33: -0.1431 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6440 103.9353 17.5028 REMARK 3 T TENSOR REMARK 3 T11: 0.3272 T22: 0.4312 REMARK 3 T33: 0.4886 T12: 0.0301 REMARK 3 T13: -0.0956 T23: -0.2257 REMARK 3 L TENSOR REMARK 3 L11: 2.5395 L22: 1.6377 REMARK 3 L33: 4.2459 L12: -0.2099 REMARK 3 L13: 0.7299 L23: 2.0175 REMARK 3 S TENSOR REMARK 3 S11: -0.1650 S12: -0.5293 S13: 0.6651 REMARK 3 S21: 0.2225 S22: 0.4389 S23: -0.7845 REMARK 3 S31: -0.3861 S32: 0.7748 S33: -0.2710 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3653 79.0139 8.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.1935 REMARK 3 T33: 0.1366 T12: -0.0092 REMARK 3 T13: -0.0000 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.5797 L22: 2.3557 REMARK 3 L33: 1.5949 L12: 0.4590 REMARK 3 L13: 0.6085 L23: 0.9123 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.3242 S13: -0.1062 REMARK 3 S21: 0.1496 S22: -0.0323 S23: 0.0134 REMARK 3 S31: -0.0900 S32: 0.0000 S33: -0.0111 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0472 69.8918 0.8555 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1220 REMARK 3 T33: 0.2368 T12: 0.0184 REMARK 3 T13: -0.0125 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 3.8054 L22: 3.9043 REMARK 3 L33: 5.8018 L12: 0.2338 REMARK 3 L13: -0.5820 L23: 1.4481 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 0.0333 S13: -0.4173 REMARK 3 S21: -0.0552 S22: 0.1336 S23: -0.0373 REMARK 3 S31: 0.3190 S32: -0.2227 S33: -0.0947 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4825 91.6201 -1.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.2744 REMARK 3 T33: 0.2427 T12: 0.0131 REMARK 3 T13: 0.0417 T23: -0.1024 REMARK 3 L TENSOR REMARK 3 L11: 3.4562 L22: 5.3093 REMARK 3 L33: 1.9476 L12: 4.1432 REMARK 3 L13: 0.0381 L23: -0.6258 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: 0.0827 S13: 0.0376 REMARK 3 S21: 0.0327 S22: 0.2028 S23: -0.3456 REMARK 3 S31: 0.1052 S32: 0.6072 S33: -0.1882 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1213 84.9208 -0.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.2221 REMARK 3 T33: 0.3202 T12: 0.0157 REMARK 3 T13: -0.0035 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 6.8745 L22: 5.9413 REMARK 3 L33: 8.7655 L12: -4.5837 REMARK 3 L13: 6.8179 L23: -4.1892 REMARK 3 S TENSOR REMARK 3 S11: -0.2002 S12: -0.3729 S13: -0.4564 REMARK 3 S21: -0.3404 S22: 0.0684 S23: 0.2826 REMARK 3 S31: -0.0798 S32: -0.6882 S33: 0.2325 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7403 92.2701 0.8555 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1140 REMARK 3 T33: 0.1656 T12: -0.0139 REMARK 3 T13: -0.0025 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 8.4464 L22: 3.5438 REMARK 3 L33: 2.0540 L12: 4.1087 REMARK 3 L13: 3.1178 L23: 1.1574 REMARK 3 S TENSOR REMARK 3 S11: -0.1772 S12: -0.0954 S13: 0.1408 REMARK 3 S21: -0.0588 S22: 0.0825 S23: 0.1455 REMARK 3 S31: -0.1733 S32: 0.0720 S33: 0.0947 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0275 100.4337 -3.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.3547 T22: 0.2463 REMARK 3 T33: 0.2311 T12: 0.0201 REMARK 3 T13: -0.0326 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 6.8467 L22: 4.0267 REMARK 3 L33: 4.0711 L12: 4.2250 REMARK 3 L13: 4.7666 L23: 3.1542 REMARK 3 S TENSOR REMARK 3 S11: -0.9200 S12: 0.5612 S13: 0.8127 REMARK 3 S21: -0.6381 S22: 0.2094 S23: 0.0143 REMARK 3 S31: -0.9887 S32: 0.3475 S33: 0.6213 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9595 100.0012 -11.1481 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.5492 REMARK 3 T33: 0.4626 T12: 0.0813 REMARK 3 T13: -0.1754 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 8.9252 L22: 7.1892 REMARK 3 L33: 5.3772 L12: 4.8185 REMARK 3 L13: 0.4175 L23: 5.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.2402 S12: 1.5311 S13: 1.3205 REMARK 3 S21: -1.1421 S22: -0.8518 S23: 0.7138 REMARK 3 S31: -0.8605 S32: -0.3386 S33: 0.9060 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6991 102.5807 0.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.3079 REMARK 3 T33: 0.5430 T12: 0.1344 REMARK 3 T13: -0.1341 T23: -0.1808 REMARK 3 L TENSOR REMARK 3 L11: 6.5682 L22: 9.1303 REMARK 3 L33: 6.9531 L12: 0.1525 REMARK 3 L13: 0.3580 L23: -0.8976 REMARK 3 S TENSOR REMARK 3 S11: -0.4328 S12: 0.0165 S13: 0.5900 REMARK 3 S21: -0.6250 S22: -0.1282 S23: 1.5448 REMARK 3 S31: -1.4006 S32: -1.0981 S33: 0.7454 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9290 95.9511 5.4455 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1275 REMARK 3 T33: 0.1573 T12: 0.0093 REMARK 3 T13: 0.0177 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 8.3546 L22: 3.0680 REMARK 3 L33: 2.8302 L12: 3.1466 REMARK 3 L13: 4.5279 L23: 1.8821 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: -0.4824 S13: 0.1171 REMARK 3 S21: 0.1599 S22: -0.0010 S23: 0.0847 REMARK 3 S31: 0.0149 S32: -0.1809 S33: 0.0630 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9653 89.3606 -12.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.4802 T22: 0.5727 REMARK 3 T33: 0.5432 T12: -0.0273 REMARK 3 T13: -0.1566 T23: -0.1591 REMARK 3 L TENSOR REMARK 3 L11: 5.4415 L22: 4.3031 REMARK 3 L33: 2.0782 L12: 3.7938 REMARK 3 L13: 0.7635 L23: -1.2745 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: 1.8934 S13: -0.9225 REMARK 3 S21: -1.1197 S22: 0.3604 S23: 0.7051 REMARK 3 S31: 0.5782 S32: -0.8151 S33: -0.1286 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5810 96.2278 -8.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.3094 REMARK 3 T33: 0.1668 T12: 0.0120 REMARK 3 T13: -0.0294 T23: 0.0737 REMARK 3 L TENSOR REMARK 3 L11: 5.3711 L22: 1.7924 REMARK 3 L33: 6.5636 L12: -2.1922 REMARK 3 L13: 3.9425 L23: 0.2028 REMARK 3 S TENSOR REMARK 3 S11: -0.1414 S12: 0.8929 S13: 0.5959 REMARK 3 S21: -0.0927 S22: 0.1317 S23: 0.0459 REMARK 3 S31: -0.8416 S32: 0.2111 S33: 0.0148 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6402 98.8786 -10.4314 REMARK 3 T TENSOR REMARK 3 T11: 0.4360 T22: 0.5588 REMARK 3 T33: 0.2501 T12: -0.1516 REMARK 3 T13: 0.0923 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.8039 L22: 2.6190 REMARK 3 L33: 0.1986 L12: -1.4506 REMARK 3 L13: 0.3996 L23: -0.7216 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: 1.4161 S13: 0.2349 REMARK 3 S21: -1.0152 S22: 0.3365 S23: -0.2772 REMARK 3 S31: -0.4924 S32: 0.0109 S33: -0.5232 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8721 86.7733 -9.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.3629 T22: 0.4035 REMARK 3 T33: 0.2283 T12: -0.0312 REMARK 3 T13: -0.0347 T23: -0.1413 REMARK 3 L TENSOR REMARK 3 L11: 6.5117 L22: 4.1951 REMARK 3 L33: 6.4560 L12: 1.0395 REMARK 3 L13: -3.2046 L23: -4.9449 REMARK 3 S TENSOR REMARK 3 S11: -0.2317 S12: 0.6696 S13: -0.7957 REMARK 3 S21: -0.9701 S22: 0.1961 S23: -0.0051 REMARK 3 S31: -0.2007 S32: 0.0624 S33: 0.0421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 41.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ONQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM DL-MALIC ACID, 40 MM MES, 40 MM REMARK 280 TRIS, PEG 1500, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.14950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.03300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.33150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.03300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.14950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.33150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 TYR A 19 REMARK 465 ASN A 20 REMARK 465 HIS A 21 REMARK 465 SER A 22 REMARK 465 TRP A 23 REMARK 465 LEU A 104 REMARK 465 HIS A 105 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 LYS A 108 REMARK 465 VAL A 109 REMARK 465 SER A 110 REMARK 465 GLY B 100 REMARK 465 SER B 101 REMARK 465 LEU B 102 REMARK 465 VAL B 103 REMARK 465 PRO B 104 REMARK 465 ARG B 105 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 MET B 99 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 20 O HOH B 240 2.16 REMARK 500 O HOH A 463 O HOH B 242 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 -120.83 46.38 REMARK 500 ARG A 71 -75.73 -50.43 REMARK 500 LEU A 114 115.49 -162.08 REMARK 500 PHE A 123 -61.29 -130.48 REMARK 500 ASN A 128 -92.35 57.20 REMARK 500 ASP A 164 -68.11 -107.48 REMARK 500 GLU A 255 22.92 -153.82 REMARK 500 TRP B 60 -3.66 75.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 42H A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X6B RELATED DB: PDB REMARK 900 RELATED ID: 4X6C RELATED DB: PDB REMARK 900 RELATED ID: 4X6D RELATED DB: PDB REMARK 900 RELATED ID: 4X6F RELATED DB: PDB DBREF 4X6E A 4 278 UNP P06126 CD1A_HUMAN 21 295 DBREF 4X6E B 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 4X6E ILE A 13 UNP P06126 THR 30 VARIANT SEQADV 4X6E TRP A 51 UNP P06126 CYS 68 VARIANT SEQADV 4X6E GLY A 279 UNP P06126 EXPRESSION TAG SEQADV 4X6E SER A 280 UNP P06126 EXPRESSION TAG SEQADV 4X6E LEU A 281 UNP P06126 EXPRESSION TAG SEQADV 4X6E VAL A 282 UNP P06126 EXPRESSION TAG SEQADV 4X6E PRO A 283 UNP P06126 EXPRESSION TAG SEQADV 4X6E ARG A 284 UNP P06126 EXPRESSION TAG SEQADV 4X6E GLY B 100 UNP P61769 EXPRESSION TAG SEQADV 4X6E SER B 101 UNP P61769 EXPRESSION TAG SEQADV 4X6E LEU B 102 UNP P61769 EXPRESSION TAG SEQADV 4X6E VAL B 103 UNP P61769 EXPRESSION TAG SEQADV 4X6E PRO B 104 UNP P61769 EXPRESSION TAG SEQADV 4X6E ARG B 105 UNP P61769 EXPRESSION TAG SEQRES 1 A 281 LEU LYS GLU PRO LEU SER PHE HIS VAL ILE TRP ILE ALA SEQRES 2 A 281 SER PHE TYR ASN HIS SER TRP LYS GLN ASN LEU VAL SER SEQRES 3 A 281 GLY TRP LEU SER ASP LEU GLN THR HIS THR TRP ASP SER SEQRES 4 A 281 ASN SER SER THR ILE VAL PHE LEU TRP PRO TRP SER ARG SEQRES 5 A 281 GLY ASN PHE SER ASN GLU GLU TRP LYS GLU LEU GLU THR SEQRES 6 A 281 LEU PHE ARG ILE ARG THR ILE ARG SER PHE GLU GLY ILE SEQRES 7 A 281 ARG ARG TYR ALA HIS GLU LEU GLN PHE GLU TYR PRO PHE SEQRES 8 A 281 GLU ILE GLN VAL THR GLY GLY CYS GLU LEU HIS SER GLY SEQRES 9 A 281 LYS VAL SER GLY SER PHE LEU GLN LEU ALA TYR GLN GLY SEQRES 10 A 281 SER ASP PHE VAL SER PHE GLN ASN ASN SER TRP LEU PRO SEQRES 11 A 281 TYR PRO VAL ALA GLY ASN MET ALA LYS HIS PHE CYS LYS SEQRES 12 A 281 VAL LEU ASN GLN ASN GLN HIS GLU ASN ASP ILE THR HIS SEQRES 13 A 281 ASN LEU LEU SER ASP THR CYS PRO ARG PHE ILE LEU GLY SEQRES 14 A 281 LEU LEU ASP ALA GLY LYS ALA HIS LEU GLN ARG GLN VAL SEQRES 15 A 281 LYS PRO GLU ALA TRP LEU SER HIS GLY PRO SER PRO GLY SEQRES 16 A 281 PRO GLY HIS LEU GLN LEU VAL CYS HIS VAL SER GLY PHE SEQRES 17 A 281 TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG GLY GLU SEQRES 18 A 281 GLN GLU GLN GLN GLY THR GLN ARG GLY ASP ILE LEU PRO SEQRES 19 A 281 SER ALA ASP GLY THR TRP TYR LEU ARG ALA THR LEU GLU SEQRES 20 A 281 VAL ALA ALA GLY GLU ALA ALA ASP LEU SER CYS ARG VAL SEQRES 21 A 281 LYS HIS SER SER LEU GLU GLY GLN ASP ILE VAL LEU TYR SEQRES 22 A 281 TRP GLU GLY SER LEU VAL PRO ARG SEQRES 1 B 105 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 105 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 105 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 105 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 105 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 105 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 105 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 105 ILE VAL LYS TRP ASP ARG ASP MET GLY SER LEU VAL PRO SEQRES 9 B 105 ARG HET MLT A 301 9 HET 42H A 302 35 HETNAM MLT D-MALATE HETNAM 42H (4R,7R,18Z)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9- HETNAM 2 42H TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM 4-OXIDE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 MLT C4 H6 O5 FORMUL 4 42H C26 H53 N O7 P 1+ FORMUL 5 HOH *131(H2 O) HELIX 1 AA1 TRP A 51 GLY A 56 5 6 HELIX 2 AA2 SER A 59 ALA A 85 1 27 HELIX 3 AA3 GLY A 138 ASN A 149 1 12 HELIX 4 AA4 ASN A 151 ASP A 164 1 14 HELIX 5 AA5 ASP A 164 GLN A 182 1 19 HELIX 6 AA6 GLY A 254 ALA A 256 5 3 HELIX 7 AA7 HIS A 265 GLU A 269 5 5 HELIX 8 AA8 GLU A 278 VAL A 282 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N THR A 39 O VAL A 48 SHEET 3 AA1 8 GLN A 25 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 PHE A 10 PHE A 18 -1 N ILE A 15 O LEU A 27 SHEET 5 AA1 8 PHE A 94 CYS A 102 -1 O GLY A 100 N VAL A 12 SHEET 6 AA1 8 PHE A 113 TYR A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 SER A 121 GLN A 127 -1 O VAL A 124 N LEU A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O LEU A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 HIS A 193 0 SHEET 2 AA2 4 HIS A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 TRP A 243 ALA A 252 -1 O LEU A 249 N LEU A 204 SHEET 4 AA2 4 GLN A 231 ARG A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 HIS A 193 0 SHEET 2 AA3 4 HIS A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 TRP A 243 ALA A 252 -1 O LEU A 249 N LEU A 204 SHEET 4 AA3 4 LEU A 236 PRO A 237 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O ILE A 273 N VAL A 263 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.06 SSBOND 2 CYS A 206 CYS A 261 1555 1555 2.02 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.02 CISPEP 1 TYR A 92 PRO A 93 0 -1.23 CISPEP 2 TYR A 212 PRO A 213 0 2.64 CISPEP 3 VAL A 282 PRO A 283 0 0.66 CISPEP 4 HIS B 31 PRO B 32 0 -2.74 SITE 1 AC1 13 VAL A 12 TRP A 14 HIS A 38 TRP A 40 SITE 2 AC1 13 ILE A 47 TRP A 63 PHE A 70 ARG A 73 SITE 3 AC1 13 SER A 77 GLY A 100 LEU A 116 TRP A 131 SITE 4 AC1 13 LEU A 148 CRYST1 42.299 90.663 108.066 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009254 0.00000