HEADER TRANSFERASE 09-DEC-14 4X6R TITLE AN ISOFORM-SPECIFIC MYRISTYLATION SWITCH TARGETS RIIB PKA HOLOENZYMES TITLE 2 TO MEMBRANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY COMPND 10 SUBUNIT; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 10 ORGANISM_COMMON: BOVINE; SOURCE 11 ORGANISM_TAXID: 9913; SOURCE 12 GENE: PRKAR1A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PKA, MEMBRANE BINDING, MOLECULAR SWITCH, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,F.YE,A.C.BASTIDAS,A.P.KORNEV,M.H.GINSBERG,J.WU,S.S.TAYLOR REVDAT 8 20-NOV-24 4X6R 1 LINK REVDAT 7 24-JUN-20 4X6R 1 LINK REVDAT 6 25-DEC-19 4X6R 1 REMARK REVDAT 5 20-SEP-17 4X6R 1 JRNL REMARK REVDAT 4 16-SEP-15 4X6R 1 JRNL REVDAT 3 02-SEP-15 4X6R 1 JRNL REVDAT 2 26-AUG-15 4X6R 1 REMARK REVDAT 1 22-JUL-15 4X6R 0 JRNL AUTH P.ZHANG,F.YE,A.C.BASTIDAS,A.P.KORNEV,J.WU,M.H.GINSBERG, JRNL AUTH 2 S.S.TAYLOR JRNL TITL AN ISOFORM-SPECIFIC MYRISTYLATION SWITCH TARGETS TYPE II PKA JRNL TITL 2 HOLOENZYMES TO MEMBRANES. JRNL REF STRUCTURE V. 23 1563 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26278174 JRNL DOI 10.1016/J.STR.2015.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.9016 - 6.2880 1.00 2841 143 0.1834 0.2210 REMARK 3 2 6.2880 - 4.9916 1.00 2734 158 0.1792 0.2304 REMARK 3 3 4.9916 - 4.3608 1.00 2698 144 0.1430 0.1872 REMARK 3 4 4.3608 - 3.9622 1.00 2688 165 0.1463 0.2023 REMARK 3 5 3.9622 - 3.6782 1.00 2697 146 0.1616 0.2156 REMARK 3 6 3.6782 - 3.4614 1.00 2648 152 0.1823 0.2081 REMARK 3 7 3.4614 - 3.2880 1.00 2678 142 0.1963 0.2497 REMARK 3 8 3.2880 - 3.1449 1.00 2646 128 0.1999 0.2464 REMARK 3 9 3.1449 - 3.0238 1.00 2683 151 0.2002 0.2552 REMARK 3 10 3.0238 - 2.9195 1.00 2661 132 0.2032 0.2687 REMARK 3 11 2.9195 - 2.8282 1.00 2654 146 0.2098 0.2900 REMARK 3 12 2.8282 - 2.7474 1.00 2671 137 0.2166 0.2788 REMARK 3 13 2.7474 - 2.6750 1.00 2645 134 0.2088 0.2635 REMARK 3 14 2.6750 - 2.6098 1.00 2660 145 0.2215 0.3136 REMARK 3 15 2.6098 - 2.5504 1.00 2636 126 0.2284 0.2452 REMARK 3 16 2.5504 - 2.4962 1.00 2673 149 0.2342 0.3054 REMARK 3 17 2.4962 - 2.4462 1.00 2615 140 0.2307 0.3040 REMARK 3 18 2.4462 - 2.4001 1.00 2681 137 0.2293 0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 43.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88910 REMARK 3 B22 (A**2) : 1.88910 REMARK 3 B33 (A**2) : -3.77820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 5389 REMARK 3 ANGLE : 1.857 7277 REMARK 3 CHIRALITY : 0.133 769 REMARK 3 PLANARITY : 0.010 927 REMARK 3 DIHEDRAL : 17.822 2029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48209 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION OF RIB(91-379,R333K): REMARK 280 MYRC(K7C) HETERODIMER :RC HETERODIMER THAT WAS CONCENTRATED TO REMARK 280 14 MG/ML AND SCREENED AGAINST DIFFERENT AMMONIUM SULFATE REMARK 280 CONCENTRATIONS RANGING FROM 0.8-2.5 M IN 0.1 M SODIUM CITRATE REMARK 280 BUFFER AND ALSO VARYING THE PH FROM 5.0-6.0 USING THE HANGING REMARK 280 DROP VAPOR DIFFUSION METHOD. THE CRYSTAL USED FOR STRUCTURE REMARK 280 DETERMINATION WAS OBTAINED FROM A 4 UL DROP CONTAINING 1:1 REMARK 280 PROTEIN TO WELL SOLUTION WITH THE WELL SOLUTION CONTAINING 1.6 M REMARK 280 AMMONIUM SULFATE AND 0.1 M SODIUM CITRATE AT PH 5.5, BATCH MODE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.92067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.96033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.96033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.92067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 CYS A 7 SG REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 ASN B 307 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 524 O HOH B 528 1.87 REMARK 500 O HOH A 643 O HOH A 644 1.98 REMARK 500 O HOH A 640 O HOH A 641 1.99 REMARK 500 O SER A 252 O HOH A 613 2.04 REMARK 500 O HOH B 501 O HOH B 514 2.05 REMARK 500 O HOH A 616 O HOH B 529 2.09 REMARK 500 O HOH A 631 O HOH A 633 2.14 REMARK 500 O HOH B 619 O HOH B 620 2.16 REMARK 500 N GLY A 1 O1 MYR A 405 2.16 REMARK 500 O HOH A 634 O HOH A 635 2.16 REMARK 500 O2P SEP A 139 O HOH A 592 2.17 REMARK 500 O HOH A 524 O HOH A 525 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 501 O HOH B 527 6555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 93 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 -124.79 64.73 REMARK 500 ALA A 38 -169.14 -161.53 REMARK 500 ILE A 46 -63.87 -93.32 REMARK 500 ARG A 165 -7.87 77.67 REMARK 500 ASP A 184 79.91 64.18 REMARK 500 ASN B 186 -1.23 73.57 REMARK 500 GLU B 308 177.48 171.90 REMARK 500 SER B 319 -9.75 85.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 136 -11.17 REMARK 500 LEU A 273 13.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 ATP A 402 O2G 102.6 REMARK 620 3 ATP A 402 O2A 86.6 108.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAM A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X6Q RELATED DB: PDB DBREF 4X6R A 1 350 UNP P05132 KAPCA_MOUSE 2 351 DBREF 4X6R B 90 379 UNP P00514 KAP0_BOVIN 91 380 SEQADV 4X6R CYS A 7 UNP P05132 LYS 8 ENGINEERED MUTATION SEQADV 4X6R LYS B 333 UNP P00514 ARG 334 ENGINEERED MUTATION SEQRES 1 A 350 GLY ASN ALA ALA ALA ALA CYS LYS GLY SER GLU GLN GLU SEQRES 2 A 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 A 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 A 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 A 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 A 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 A 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 A 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 A 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 A 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 A 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 A 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 A 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 A 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 A 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 A 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 A 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 A 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 A 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 A 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 A 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 A 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 A 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 A 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 A 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 A 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 A 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 B 290 LYS GLY ARG ARG ARG ARG GLY ALA ILE SER ALA GLU VAL SEQRES 2 B 290 TYR THR GLU GLU ASP ALA ALA SER TYR VAL ARG LYS VAL SEQRES 3 B 290 ILE PRO LYS ASP TYR LYS THR MET ALA ALA LEU ALA LYS SEQRES 4 B 290 ALA ILE GLU LYS ASN VAL LEU PHE SER HIS LEU ASP ASP SEQRES 5 B 290 ASN GLU ARG SER ASP ILE PHE ASP ALA MET PHE PRO VAL SEQRES 6 B 290 SER PHE ILE ALA GLY GLU THR VAL ILE GLN GLN GLY ASP SEQRES 7 B 290 GLU GLY ASP ASN PHE TYR VAL ILE ASP GLN GLY GLU MET SEQRES 8 B 290 ASP VAL TYR VAL ASN ASN GLU TRP ALA THR SER VAL GLY SEQRES 9 B 290 GLU GLY GLY SER PHE GLY GLU LEU ALA LEU ILE TYR GLY SEQRES 10 B 290 THR PRO ARG ALA ALA THR VAL LYS ALA LYS THR ASN VAL SEQRES 11 B 290 LYS LEU TRP GLY ILE ASP ARG ASP SER TYR ARG ARG ILE SEQRES 12 B 290 LEU MET GLY SER THR LEU ARG LYS ARG LYS MET TYR GLU SEQRES 13 B 290 GLU PHE LEU SER LYS VAL SER ILE LEU GLU SER LEU ASP SEQRES 14 B 290 LYS TRP GLU ARG LEU THR VAL ALA ASP ALA LEU GLU PRO SEQRES 15 B 290 VAL GLN PHE GLU ASP GLY GLN LYS ILE VAL VAL GLN GLY SEQRES 16 B 290 GLU PRO GLY ASP GLU PHE PHE ILE ILE LEU GLU GLY SER SEQRES 17 B 290 ALA ALA VAL LEU GLN ARG ARG SER GLU ASN GLU GLU PHE SEQRES 18 B 290 VAL GLU VAL GLY ARG LEU GLY PRO SER ASP TYR PHE GLY SEQRES 19 B 290 GLU ILE ALA LEU LEU MET ASN ARG PRO LYS ALA ALA THR SEQRES 20 B 290 VAL VAL ALA ARG GLY PRO LEU LYS CYS VAL LYS LEU ASP SEQRES 21 B 290 ARG PRO ARG PHE GLU ARG VAL LEU GLY PRO CYS SER ASP SEQRES 22 B 290 ILE LEU LYS ARG ASN ILE GLN GLN TYR ASN SER PHE VAL SEQRES 23 B 290 SER LEU SER VAL MODRES 4X6R SEP A 139 SER MODIFIED RESIDUE MODRES 4X6R TPO A 197 THR MODIFIED RESIDUE MODRES 4X6R SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET SO4 A 401 5 HET ATP A 402 31 HET TAM A 403 11 HET GOL A 404 6 HET MYR A 405 15 HET SO4 A 406 5 HET MG A 407 1 HET MG A 408 1 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET GOL B 405 6 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM SO4 SULFATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETNAM GOL GLYCEROL HETNAM MYR MYRISTIC ACID HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 SO4 6(O4 S 2-) FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 TAM C7 H17 N O3 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 MYR C14 H28 O2 FORMUL 9 MG 2(MG 2+) FORMUL 16 HOH *269(H2 O) HELIX 1 AA1 CYS A 7 THR A 32 1 26 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 SER A 252 1 11 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 THR B 104 SER B 110 1 7 HELIX 17 AB8 ASP B 119 ILE B 130 1 12 HELIX 18 AB9 ASN B 133 HIS B 138 1 6 HELIX 19 AC1 ASP B 140 MET B 151 1 12 HELIX 20 AC2 GLY B 199 ILE B 204 5 6 HELIX 21 AC3 ARG B 226 LYS B 250 1 25 HELIX 22 AC4 VAL B 251 GLU B 255 5 5 HELIX 23 AC5 ASP B 258 LEU B 269 1 12 HELIX 24 AC6 GLU B 324 MET B 329 1 6 HELIX 25 AC7 ARG B 350 GLY B 358 1 9 HELIX 26 AC8 PRO B 359 LYS B 365 1 7 HELIX 27 AC9 ASN B 367 VAL B 375 1 9 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 ARG A 56 HIS A 62 -1 O VAL A 57 N LEU A 49 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 SHEET 1 AA4 2 CYS A 199 GLY A 200 0 SHEET 2 AA4 2 ILE B 98 SER B 99 -1 O ILE B 98 N GLY A 200 SHEET 1 AA5 4 PHE B 152 PHE B 156 0 SHEET 2 AA5 4 VAL B 219 ASP B 225 -1 O LEU B 221 N VAL B 154 SHEET 3 AA5 4 ASN B 171 GLN B 177 -1 N VAL B 174 O TRP B 222 SHEET 4 AA5 4 SER B 197 PHE B 198 -1 O PHE B 198 N TYR B 173 SHEET 1 AA6 4 THR B 161 ILE B 163 0 SHEET 2 AA6 4 THR B 212 ALA B 215 -1 O VAL B 213 N ILE B 163 SHEET 3 AA6 4 MET B 180 VAL B 184 -1 N TYR B 183 O THR B 212 SHEET 4 AA6 4 GLU B 187 VAL B 192 -1 O THR B 190 N VAL B 182 SHEET 1 AA7 4 GLU B 270 PHE B 274 0 SHEET 2 AA7 4 THR B 336 ASP B 349 -1 O LEU B 343 N PHE B 274 SHEET 3 AA7 4 GLU B 289 ARG B 303 -1 N LEU B 294 O LYS B 344 SHEET 4 AA7 4 PHE B 310 LEU B 316 -1 O GLY B 314 N VAL B 300 SHEET 1 AA8 4 LYS B 279 VAL B 281 0 SHEET 2 AA8 4 THR B 336 ASP B 349 -1 O VAL B 337 N ILE B 280 SHEET 3 AA8 4 GLU B 289 ARG B 303 -1 N LEU B 294 O LYS B 344 SHEET 4 AA8 4 TYR B 321 PHE B 322 -1 O PHE B 322 N PHE B 291 LINK N GLY A 1 C1 MYR A 405 1555 1555 1.35 LINK C PHE A 138 N SEP A 139 1555 1555 1.35 LINK C SEP A 139 N GLU A 140 1555 1555 1.32 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.31 LINK C VAL A 337 N SEP A 338 1555 1555 1.32 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK OD1 ASN A 171 MG MG A 407 1555 1555 2.41 LINK O2G ATP A 402 MG MG A 407 1555 1555 2.72 LINK O2A ATP A 402 MG MG A 407 1555 1555 2.27 LINK O2B ATP A 402 MG MG A 408 1555 1555 2.46 SITE 1 AC1 2 ARG A 137 HOH A 539 SITE 1 AC2 25 GLY A 50 THR A 51 GLY A 52 SER A 53 SITE 2 AC2 25 PHE A 54 GLY A 55 VAL A 57 ALA A 70 SITE 3 AC2 25 LYS A 72 MET A 120 GLU A 121 VAL A 123 SITE 4 AC2 25 GLU A 127 ASP A 166 LYS A 168 GLU A 170 SITE 5 AC2 25 ASN A 171 LEU A 173 THR A 183 ASP A 184 SITE 6 AC2 25 PHE A 327 MG A 407 MG A 408 ARG B 94 SITE 7 AC2 25 ALA B 97 SITE 1 AC3 10 LYS A 189 ARG A 194 THR A 195 TRP A 196 SITE 2 AC3 10 TPO A 197 TYR B 103 THR B 104 GLU B 105 SITE 3 AC3 10 GLU B 106 HOH B 610 SITE 1 AC4 5 ASP A 329 TYR A 330 HOH A 560 HOH A 567 SITE 2 AC4 5 LYS B 90 SITE 1 AC5 7 GLY A 1 ASN A 2 PHE A 18 LEU A 152 SITE 2 AC5 7 GLU A 155 GLN A 307 LYS A 309 SITE 1 AC6 4 ARG A 194 ASN A 216 LYS A 217 HOH A 561 SITE 1 AC7 3 ASN A 171 ASP A 184 ATP A 402 SITE 1 AC8 3 PHE A 54 ASP A 184 ATP A 402 SITE 1 AC9 11 PHE B 322 GLY B 323 GLU B 324 ILE B 325 SITE 2 AC9 11 HOH B 548 HOH B 550 HOH B 551 HOH B 579 SITE 3 AC9 11 HOH B 582 HOH B 619 HOH B 621 SITE 1 AD1 5 PRO A 258 SER A 259 GLN B 283 GLY B 284 SITE 2 AD1 5 ARG B 303 SITE 1 AD2 7 ILE B 163 GLY B 169 ASP B 170 ASN B 171 SITE 2 AD2 7 TYR B 173 ARG B 209 HOH B 567 SITE 1 AD3 6 ARG B 93 MET B 329 ASN B 330 ARG B 350 SITE 2 AD3 6 HOH B 505 HOH B 509 SITE 1 AD4 6 LYS A 83 SER B 99 ALA B 100 GLU B 101 SITE 2 AD4 6 GLY B 206 ARG B 226 CRYST1 125.760 125.760 140.881 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007952 0.004591 0.000000 0.00000 SCALE2 0.000000 0.009182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007098 0.00000