HEADER HYDROLASE/HYDROLASE INHIBITOR 09-DEC-14 4X6X TITLE HUMAN SOLUBLE EPOXIDE HYDROLASE IN COMPLEX WITH A THREE SUBSTITUTED TITLE 2 CYCLOPROPANE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HYDROLASE DOMAIN, UNP RESIDUES 230-555; COMPND 5 EC: 3.3.2.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CHIYO,K.TAKAI,T.ISHII REVDAT 4 08-NOV-23 4X6X 1 REMARK REVDAT 3 05-FEB-20 4X6X 1 SOURCE JRNL REMARK REVDAT 2 15-APR-15 4X6X 1 JRNL REVDAT 1 08-APR-15 4X6X 0 JRNL AUTH K.TAKAI,N.CHIYO,T.NAKAJIMA,T.NARIAI,C.ISHIKAWA,S.NAKATANI, JRNL AUTH 2 A.IKENO,S.YAMAMOTO,T.SONE JRNL TITL THREE-DIMENSIONAL RATIONAL APPROACH TO THE DISCOVERY OF JRNL TITL 2 POTENT SUBSTITUTED CYCLOPROPYL UREA SOLUBLE EPOXIDE JRNL TITL 3 HYDROLASE INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 1705 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 25800114 JRNL DOI 10.1016/J.BMCL.2015.02.076 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 61023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3261 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4005 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.101 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5324 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4926 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7224 ; 1.173 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11380 ; 0.771 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 5.904 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;33.905 ;23.934 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;14.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6034 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2526 ; 0.677 ; 1.853 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2525 ; 0.676 ; 1.852 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3154 ; 1.197 ; 2.775 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6945 -6.3426 24.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.0950 REMARK 3 T33: 0.0998 T12: -0.0021 REMARK 3 T13: -0.0022 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9628 L22: 1.4485 REMARK 3 L33: 1.2982 L12: -0.2917 REMARK 3 L13: -0.2706 L23: 0.3142 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0182 S13: -0.0842 REMARK 3 S21: 0.0632 S22: -0.0411 S23: 0.0012 REMARK 3 S31: 0.0288 S32: -0.1085 S33: 0.0618 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 369 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1375 9.2795 28.6301 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.2018 REMARK 3 T33: 0.1710 T12: 0.1279 REMARK 3 T13: 0.0448 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.8451 L22: 3.3931 REMARK 3 L33: 1.6825 L12: 1.2003 REMARK 3 L13: -0.1659 L23: -0.8926 REMARK 3 S TENSOR REMARK 3 S11: 0.1065 S12: -0.1097 S13: 0.2814 REMARK 3 S21: 0.3403 S22: -0.0710 S23: 0.5369 REMARK 3 S31: -0.3557 S32: -0.3685 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2711 4.0072 30.8163 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.0901 REMARK 3 T33: 0.0619 T12: 0.0229 REMARK 3 T13: -0.0039 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.1732 L22: 1.4944 REMARK 3 L33: 1.1432 L12: 0.0145 REMARK 3 L13: -0.2022 L23: 0.3304 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.1025 S13: 0.0661 REMARK 3 S21: 0.1487 S22: -0.0435 S23: 0.0052 REMARK 3 S31: -0.0917 S32: -0.0760 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 230 B 368 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5244 -16.3095 3.6125 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0955 REMARK 3 T33: 0.1198 T12: 0.0175 REMARK 3 T13: 0.0142 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.1826 L22: 1.6443 REMARK 3 L33: 1.2959 L12: -0.0977 REMARK 3 L13: -0.3619 L23: 0.2826 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.1194 S13: 0.0049 REMARK 3 S21: -0.0575 S22: -0.0460 S23: -0.1144 REMARK 3 S31: -0.0377 S32: 0.0178 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 369 B 429 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9705 -30.9418 -14.4436 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.2077 REMARK 3 T33: 0.1422 T12: 0.0260 REMARK 3 T13: 0.0386 T23: -0.1577 REMARK 3 L TENSOR REMARK 3 L11: 2.1423 L22: 3.7322 REMARK 3 L33: 2.6579 L12: 0.9551 REMARK 3 L13: -0.3963 L23: -1.4583 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.4888 S13: -0.3972 REMARK 3 S21: -0.7151 S22: 0.0128 S23: -0.2832 REMARK 3 S31: 0.3913 S32: 0.0405 S33: 0.0808 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 430 B 545 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0316 -26.9419 -0.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.0624 REMARK 3 T33: 0.1258 T12: 0.0326 REMARK 3 T13: 0.0485 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.3939 L22: 2.0057 REMARK 3 L33: 1.5561 L12: -0.0237 REMARK 3 L13: -0.0841 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: 0.1324 S13: -0.1931 REMARK 3 S21: -0.1397 S22: -0.0576 S23: -0.2325 REMARK 3 S31: 0.2310 S32: 0.0757 S33: 0.0256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64285 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3ANS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG8000, 200MM SODIUM IODIDE, REMARK 280 PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.70300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.27200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.70300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.27200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 GLY A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 ALA A 546 REMARK 465 ARG A 547 REMARK 465 ASN A 548 REMARK 465 PRO A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 MET A 555 REMARK 465 MET B 220 REMARK 465 LYS B 221 REMARK 465 LYS B 222 REMARK 465 GLY B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 ALA B 546 REMARK 465 ARG B 547 REMARK 465 ASN B 548 REMARK 465 PRO B 549 REMARK 465 PRO B 550 REMARK 465 VAL B 551 REMARK 465 VAL B 552 REMARK 465 SER B 553 REMARK 465 LYS B 554 REMARK 465 MET B 555 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 -167.52 -120.96 REMARK 500 GLU A 269 -143.39 -122.03 REMARK 500 ASP A 335 -127.75 61.97 REMARK 500 ASN A 359 -45.33 79.01 REMARK 500 LEU A 480 -126.93 66.41 REMARK 500 VAL A 498 -60.12 -107.20 REMARK 500 SER B 231 -166.84 -127.67 REMARK 500 GLU B 269 -139.08 -119.32 REMARK 500 ASP B 335 -127.93 59.17 REMARK 500 ASN B 359 -44.63 79.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 291 ASP A 292 149.78 REMARK 500 MET B 291 ASP B 292 147.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S74 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S74 B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X6Y RELATED DB: PDB DBREF 4X6X A 230 555 UNP P34913 HYES_HUMAN 230 555 DBREF 4X6X B 230 555 UNP P34913 HYES_HUMAN 230 555 SEQADV 4X6X MET A 220 UNP P34913 EXPRESSION TAG SEQADV 4X6X LYS A 221 UNP P34913 EXPRESSION TAG SEQADV 4X6X LYS A 222 UNP P34913 EXPRESSION TAG SEQADV 4X6X GLY A 223 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS A 224 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS A 225 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS A 226 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS A 227 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS A 228 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS A 229 UNP P34913 EXPRESSION TAG SEQADV 4X6X MET B 220 UNP P34913 EXPRESSION TAG SEQADV 4X6X LYS B 221 UNP P34913 EXPRESSION TAG SEQADV 4X6X LYS B 222 UNP P34913 EXPRESSION TAG SEQADV 4X6X GLY B 223 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS B 224 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS B 225 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS B 226 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS B 227 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS B 228 UNP P34913 EXPRESSION TAG SEQADV 4X6X HIS B 229 UNP P34913 EXPRESSION TAG SEQRES 1 A 336 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS THR SER CYS SEQRES 2 A 336 ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL LYS SEQRES 3 A 336 PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER GLY SEQRES 4 A 336 PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER TRP SEQRES 5 A 336 TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN ALA SEQRES 6 A 336 GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR GLY SEQRES 7 A 336 GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS MET SEQRES 8 A 336 GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP LYS SEQRES 9 A 336 LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP TRP SEQRES 10 A 336 GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR PRO SEQRES 11 A 336 GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO PHE SEQRES 12 A 336 ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER ILE SEQRES 13 A 336 LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE GLN SEQRES 14 A 336 GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN LEU SEQRES 15 A 336 SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP GLU SEQRES 16 A 336 SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY GLY SEQRES 17 A 336 LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER ARG SEQRES 18 A 336 MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN GLN SEQRES 19 A 336 PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP TYR SEQRES 20 A 336 ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SER SEQRES 21 A 336 LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL THR SEQRES 22 A 336 ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER GLN SEQRES 23 A 336 HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY HIS SEQRES 24 A 336 ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS PRO SEQRES 25 A 336 THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SER SEQRES 26 A 336 ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET SEQRES 1 B 336 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS THR SER CYS SEQRES 2 B 336 ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL LYS SEQRES 3 B 336 PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER GLY SEQRES 4 B 336 PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER TRP SEQRES 5 B 336 TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN ALA SEQRES 6 B 336 GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR GLY SEQRES 7 B 336 GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS MET SEQRES 8 B 336 GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP LYS SEQRES 9 B 336 LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP TRP SEQRES 10 B 336 GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR PRO SEQRES 11 B 336 GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO PHE SEQRES 12 B 336 ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER ILE SEQRES 13 B 336 LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE GLN SEQRES 14 B 336 GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN LEU SEQRES 15 B 336 SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP GLU SEQRES 16 B 336 SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY GLY SEQRES 17 B 336 LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER ARG SEQRES 18 B 336 MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN GLN SEQRES 19 B 336 PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP TYR SEQRES 20 B 336 ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SER SEQRES 21 B 336 LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL THR SEQRES 22 B 336 ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER GLN SEQRES 23 B 336 HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY HIS SEQRES 24 B 336 ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS PRO SEQRES 25 B 336 THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SER SEQRES 26 B 336 ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET HET S74 A 601 36 HET S74 B 601 36 HETNAM S74 3-{4-[(1-{[(1S,2R,3S)-2,3- HETNAM 2 S74 DIPHENYLCYCLOPROPYL]CARBAMOYL}PIPERIDIN-4-YL) HETNAM 3 S74 OXY]PHENYL}PROPANOIC ACID FORMUL 3 S74 2(C30 H32 N2 O4) FORMUL 5 HOH *191(H2 O) HELIX 1 AA1 ASN A 233 MET A 237 5 5 HELIX 2 AA2 SER A 270 ARG A 275 5 6 HELIX 3 AA3 TYR A 276 ALA A 284 1 9 HELIX 4 AA4 GLU A 304 TYR A 308 5 5 HELIX 5 AA5 CYS A 309 GLY A 325 1 17 HELIX 6 AA6 ASP A 335 TYR A 348 1 14 HELIX 7 AA7 SER A 370 ALA A 377 1 8 HELIX 8 AA8 ASN A 378 PHE A 381 5 4 HELIX 9 AA9 ASP A 382 PHE A 387 1 6 HELIX 10 AB1 GLY A 391 ASN A 400 1 10 HELIX 11 AB2 ASN A 400 PHE A 409 1 10 HELIX 12 AB3 ALA A 411 SER A 415 5 5 HELIX 13 AB4 LYS A 421 GLY A 426 1 6 HELIX 14 AB5 THR A 443 GLY A 458 1 16 HELIX 15 AB6 PHE A 459 TRP A 465 1 7 HELIX 16 AB7 ASN A 468 LYS A 478 1 11 HELIX 17 AB8 VAL A 500 GLN A 505 5 6 HELIX 18 AB9 HIS A 506 TRP A 510 5 5 HELIX 19 AC1 TRP A 525 LYS A 530 1 6 HELIX 20 AC2 LYS A 530 ASP A 545 1 16 HELIX 21 AC3 ASN B 233 MET B 237 5 5 HELIX 22 AC4 SER B 270 ARG B 275 5 6 HELIX 23 AC5 TYR B 276 ALA B 284 1 9 HELIX 24 AC6 GLU B 304 TYR B 308 5 5 HELIX 25 AC7 CYS B 309 GLY B 325 1 17 HELIX 26 AC8 ASP B 335 TYR B 348 1 14 HELIX 27 AC9 SER B 370 ASN B 378 1 9 HELIX 28 AD1 PHE B 381 PHE B 387 1 7 HELIX 29 AD2 GLY B 391 ASN B 400 1 10 HELIX 30 AD3 ASN B 400 PHE B 409 1 10 HELIX 31 AD4 ALA B 411 SER B 415 5 5 HELIX 32 AD5 THR B 443 LYS B 455 1 13 HELIX 33 AD6 PHE B 459 TRP B 465 1 7 HELIX 34 AD7 ASN B 468 LYS B 478 1 11 HELIX 35 AD8 VAL B 500 GLN B 505 5 6 HELIX 36 AD9 HIS B 506 ILE B 511 1 6 HELIX 37 AE1 TRP B 525 LYS B 530 1 6 HELIX 38 AE2 LYS B 530 ASP B 545 1 16 SHEET 1 AA116 LEU A 514 ILE A 519 0 SHEET 2 AA116 ALA A 488 ALA A 493 1 N ALA A 488 O LYS A 515 SHEET 3 AA116 VAL A 352 LEU A 358 1 N SER A 357 O VAL A 491 SHEET 4 AA116 ALA A 329 HIS A 334 1 N GLY A 333 O LEU A 358 SHEET 5 AA116 ALA A 260 CYS A 264 1 N CYS A 262 O VAL A 330 SHEET 6 AA116 ARG A 287 MET A 291 1 O LEU A 289 N VAL A 261 SHEET 7 AA116 VAL A 248 LEU A 255 -1 N LEU A 255 O VAL A 288 SHEET 8 AA116 SER A 238 LYS A 245 -1 N GLY A 240 O PHE A 252 SHEET 9 AA116 SER B 238 LYS B 245 -1 O TYR B 241 N HIS A 239 SHEET 10 AA116 VAL B 248 LEU B 255 -1 O PHE B 252 N GLY B 240 SHEET 11 AA116 ARG B 287 MET B 291 -1 O VAL B 288 N LEU B 255 SHEET 12 AA116 ALA B 260 CYS B 264 1 N VAL B 261 O LEU B 289 SHEET 13 AA116 ALA B 329 HIS B 334 1 O VAL B 330 N CYS B 262 SHEET 14 AA116 VAL B 352 LEU B 358 1 O LEU B 358 N GLY B 333 SHEET 15 AA116 ALA B 488 ALA B 493 1 O VAL B 491 N SER B 357 SHEET 16 AA116 LYS B 515 ILE B 519 1 O LYS B 515 N ALA B 488 CISPEP 1 PHE A 267 PRO A 268 0 -9.31 CISPEP 2 PHE B 267 PRO B 268 0 -7.56 SITE 1 AC1 13 PHE A 267 ASP A 335 ILE A 363 TYR A 383 SITE 2 AC1 13 GLN A 384 PHE A 387 MET A 419 TYR A 466 SITE 3 AC1 13 VAL A 498 LEU A 499 MET A 503 HIS A 524 SITE 4 AC1 13 TRP A 525 SITE 1 AC2 14 PHE B 267 ASP B 335 MET B 339 ILE B 363 SITE 2 AC2 14 TYR B 383 GLN B 384 PHE B 387 LEU B 408 SITE 3 AC2 14 MET B 419 TYR B 466 VAL B 498 MET B 503 SITE 4 AC2 14 HIS B 524 TRP B 525 CRYST1 129.406 80.544 88.253 90.00 125.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007728 0.000000 0.005553 0.00000 SCALE2 0.000000 0.012416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013953 0.00000