HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-DEC-14 4X7Q TITLE PIM2 KINASE IN COMPLEX WITH COMPOUND 1S COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-2; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: PIM2 KINASE; COMPND 5 SYNONYM: PIM-2H; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MARCOTTE,L.F.SILVIAN REVDAT 3 27-SEP-23 4X7Q 1 REMARK REVDAT 2 22-NOV-17 4X7Q 1 SOURCE JRNL REMARK REVDAT 1 11-FEB-15 4X7Q 0 JRNL AUTH A.ISHCHENKO,L.ZHANG,J.Y.LE BRAZIDEC,J.FAN,J.H.CHONG, JRNL AUTH 2 A.HINGWAY,A.RADITSIS,L.SINGH,B.ELENBAAS,V.S.HONG,D.MARCOTTE, JRNL AUTH 3 L.SILVIAN,I.ENYEDY,J.CHAO JRNL TITL STRUCTURE-BASED DESIGN OF LOW-NANOMOLAR PIM KINASE JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 474 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 25575657 JRNL DOI 10.1016/J.BMCL.2014.12.041 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.430 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3704 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3466 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5041 ; 1.774 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7961 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 7.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;31.588 ;22.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;15.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4112 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 842 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1829 ; 2.044 ; 2.662 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1828 ; 2.044 ; 2.661 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2268 ; 3.286 ; 3.964 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 47.1483 26.6755 -1.4277 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.1752 REMARK 3 T33: 0.0149 T12: -0.0223 REMARK 3 T13: 0.0070 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.0252 L22: 1.2545 REMARK 3 L33: 0.1635 L12: -0.7648 REMARK 3 L13: 0.2170 L23: 0.2860 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.2288 S13: -0.1655 REMARK 3 S21: 0.0509 S22: -0.0125 S23: 0.0872 REMARK 3 S31: 0.0235 S32: 0.0515 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5216 12.6315 7.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.2287 REMARK 3 T33: 0.0440 T12: 0.0042 REMARK 3 T13: 0.0100 T23: 0.0692 REMARK 3 L TENSOR REMARK 3 L11: 1.7415 L22: 0.2239 REMARK 3 L33: 1.3824 L12: -0.4096 REMARK 3 L13: -0.4640 L23: 0.2803 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.4215 S13: -0.2616 REMARK 3 S21: -0.0970 S22: 0.0233 S23: 0.0450 REMARK 3 S31: 0.0396 S32: -0.0341 S33: -0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.326 REMARK 200 RESOLUTION RANGE LOW (A) : 71.132 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2IWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM POTASSIUM PHOSPHATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.13250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.06837 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.58333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 71.13250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.06837 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.58333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 71.13250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.06837 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.58333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.13674 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.16667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 82.13674 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.16667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 82.13674 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.16667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LEU B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 PRO B 16 REMARK 465 THR B 17 REMARK 465 PRO B 18 REMARK 465 PRO B 19 REMARK 465 PRO B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ASP B 24 REMARK 465 ARG B 25 REMARK 465 GLU B 26 REMARK 465 GLY B 41 REMARK 465 ASN B 66 REMARK 465 ARG B 67 REMARK 465 VAL B 68 REMARK 465 LEU B 69 REMARK 465 GLY B 70 REMARK 465 TRP B 71 REMARK 465 SER B 72 REMARK 465 PRO B 73 REMARK 465 LEU B 74 REMARK 465 SER B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 VAL B 78 REMARK 465 THR B 79 REMARK 465 GLN B 109 REMARK 465 GLU B 110 REMARK 465 GLY B 111 REMARK 465 THR B 288 REMARK 465 PRO B 289 REMARK 465 ALA B 290 REMARK 465 GLU B 291 REMARK 465 ASP B 292 REMARK 465 VAL B 293 REMARK 465 PRO B 294 REMARK 465 LEU B 295 REMARK 465 ASN B 296 REMARK 465 PRO B 297 REMARK 465 SER B 298 REMARK 465 LYS B 299 REMARK 465 GLY B 300 REMARK 465 GLY B 301 REMARK 465 PRO B 302 REMARK 465 ALA B 303 REMARK 465 PRO B 304 REMARK 465 LEU B 305 REMARK 465 ALA B 306 REMARK 465 TRP B 307 REMARK 465 SER B 308 REMARK 465 LEU B 309 REMARK 465 LEU B 310 REMARK 465 PRO B 311 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 PRO A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ASP A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 ALA A 27 REMARK 465 PHE A 28 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 52 REMARK 465 THR A 53 REMARK 465 ASP A 54 REMARK 465 ARG A 55 REMARK 465 ASN A 66 REMARK 465 ARG A 67 REMARK 465 VAL A 68 REMARK 465 LEU A 69 REMARK 465 GLY A 70 REMARK 465 TRP A 71 REMARK 465 SER A 72 REMARK 465 PRO A 73 REMARK 465 LEU A 74 REMARK 465 SER A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 VAL A 78 REMARK 465 THR A 79 REMARK 465 CYS A 80 REMARK 465 PRO A 81 REMARK 465 ALA A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 107 REMARK 465 THR A 108 REMARK 465 GLN A 109 REMARK 465 GLU A 110 REMARK 465 GLY A 111 REMARK 465 LEU A 188 REMARK 465 LEU A 189 REMARK 465 HIS A 190 REMARK 465 ASP A 191 REMARK 465 GLU A 192 REMARK 465 PRO A 193 REMARK 465 TYR A 194 REMARK 465 THR A 195 REMARK 465 ASP A 196 REMARK 465 PHE A 197 REMARK 465 THR A 288 REMARK 465 PRO A 289 REMARK 465 ALA A 290 REMARK 465 GLU A 291 REMARK 465 ASP A 292 REMARK 465 VAL A 293 REMARK 465 PRO A 294 REMARK 465 LEU A 295 REMARK 465 ASN A 296 REMARK 465 PRO A 297 REMARK 465 SER A 298 REMARK 465 LYS A 299 REMARK 465 GLY A 300 REMARK 465 GLY A 301 REMARK 465 PRO A 302 REMARK 465 ALA A 303 REMARK 465 PRO A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 TRP A 307 REMARK 465 SER A 308 REMARK 465 LEU A 309 REMARK 465 LEU A 310 REMARK 465 PRO A 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 175 CD NE CZ NH1 NH2 REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 96 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 132 CE NZ REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 217 CG CD1 CD2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 MET A 286 O REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 278 OG SER A 272 5554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 162 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO A 97 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO A 97 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 92 115.79 -2.65 REMARK 500 ASP B 163 41.34 -145.26 REMARK 500 ASP B 182 75.13 68.57 REMARK 500 THR B 195 2.97 -150.78 REMARK 500 ASP B 196 -7.51 -52.22 REMARK 500 PRO A 97 36.43 -93.93 REMARK 500 ARG A 162 -4.22 69.29 REMARK 500 ASP A 163 54.19 -142.92 REMARK 500 ASP A 182 79.85 65.04 REMARK 500 LEU A 267 32.75 -99.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 96 PRO A 97 137.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 DBREF 4X7Q B 1 311 UNP Q9P1W9 PIM2_HUMAN 1 311 DBREF 4X7Q A 1 311 UNP Q9P1W9 PIM2_HUMAN 1 311 SEQADV 4X7Q SER B 0 UNP Q9P1W9 EXPRESSION TAG SEQADV 4X7Q SER A 0 UNP Q9P1W9 EXPRESSION TAG SEQRES 1 B 312 SER MET LEU THR LYS PRO LEU GLN GLY PRO PRO ALA PRO SEQRES 2 B 312 PRO GLY THR PRO THR PRO PRO PRO GLY GLY LYS ASP ARG SEQRES 3 B 312 GLU ALA PHE GLU ALA GLU TYR ARG LEU GLY PRO LEU LEU SEQRES 4 B 312 GLY LYS GLY GLY PHE GLY THR VAL PHE ALA GLY HIS ARG SEQRES 5 B 312 LEU THR ASP ARG LEU GLN VAL ALA ILE LYS VAL ILE PRO SEQRES 6 B 312 ARG ASN ARG VAL LEU GLY TRP SER PRO LEU SER ASP SER SEQRES 7 B 312 VAL THR CYS PRO LEU GLU VAL ALA LEU LEU TRP LYS VAL SEQRES 8 B 312 GLY ALA GLY GLY GLY HIS PRO GLY VAL ILE ARG LEU LEU SEQRES 9 B 312 ASP TRP PHE GLU THR GLN GLU GLY PHE MET LEU VAL LEU SEQRES 10 B 312 GLU ARG PRO LEU PRO ALA GLN ASP LEU PHE ASP TYR ILE SEQRES 11 B 312 THR GLU LYS GLY PRO LEU GLY GLU GLY PRO SER ARG CYS SEQRES 12 B 312 PHE PHE GLY GLN VAL VAL ALA ALA ILE GLN HIS CYS HIS SEQRES 13 B 312 SER ARG GLY VAL VAL HIS ARG ASP ILE LYS ASP GLU ASN SEQRES 14 B 312 ILE LEU ILE ASP LEU ARG ARG GLY CYS ALA LYS LEU ILE SEQRES 15 B 312 ASP PHE GLY SER GLY ALA LEU LEU HIS ASP GLU PRO TYR SEQRES 16 B 312 THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO PRO GLU SEQRES 17 B 312 TRP ILE SER ARG HIS GLN TYR HIS ALA LEU PRO ALA THR SEQRES 18 B 312 VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET VAL CYS SEQRES 19 B 312 GLY ASP ILE PRO PHE GLU ARG ASP GLN GLU ILE LEU GLU SEQRES 20 B 312 ALA GLU LEU HIS PHE PRO ALA HIS VAL SER PRO ASP CYS SEQRES 21 B 312 CYS ALA LEU ILE ARG ARG CYS LEU ALA PRO LYS PRO SER SEQRES 22 B 312 SER ARG PRO SER LEU GLU GLU ILE LEU LEU ASP PRO TRP SEQRES 23 B 312 MET GLN THR PRO ALA GLU ASP VAL PRO LEU ASN PRO SER SEQRES 24 B 312 LYS GLY GLY PRO ALA PRO LEU ALA TRP SER LEU LEU PRO SEQRES 1 A 312 SER MET LEU THR LYS PRO LEU GLN GLY PRO PRO ALA PRO SEQRES 2 A 312 PRO GLY THR PRO THR PRO PRO PRO GLY GLY LYS ASP ARG SEQRES 3 A 312 GLU ALA PHE GLU ALA GLU TYR ARG LEU GLY PRO LEU LEU SEQRES 4 A 312 GLY LYS GLY GLY PHE GLY THR VAL PHE ALA GLY HIS ARG SEQRES 5 A 312 LEU THR ASP ARG LEU GLN VAL ALA ILE LYS VAL ILE PRO SEQRES 6 A 312 ARG ASN ARG VAL LEU GLY TRP SER PRO LEU SER ASP SER SEQRES 7 A 312 VAL THR CYS PRO LEU GLU VAL ALA LEU LEU TRP LYS VAL SEQRES 8 A 312 GLY ALA GLY GLY GLY HIS PRO GLY VAL ILE ARG LEU LEU SEQRES 9 A 312 ASP TRP PHE GLU THR GLN GLU GLY PHE MET LEU VAL LEU SEQRES 10 A 312 GLU ARG PRO LEU PRO ALA GLN ASP LEU PHE ASP TYR ILE SEQRES 11 A 312 THR GLU LYS GLY PRO LEU GLY GLU GLY PRO SER ARG CYS SEQRES 12 A 312 PHE PHE GLY GLN VAL VAL ALA ALA ILE GLN HIS CYS HIS SEQRES 13 A 312 SER ARG GLY VAL VAL HIS ARG ASP ILE LYS ASP GLU ASN SEQRES 14 A 312 ILE LEU ILE ASP LEU ARG ARG GLY CYS ALA LYS LEU ILE SEQRES 15 A 312 ASP PHE GLY SER GLY ALA LEU LEU HIS ASP GLU PRO TYR SEQRES 16 A 312 THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO PRO GLU SEQRES 17 A 312 TRP ILE SER ARG HIS GLN TYR HIS ALA LEU PRO ALA THR SEQRES 18 A 312 VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET VAL CYS SEQRES 19 A 312 GLY ASP ILE PRO PHE GLU ARG ASP GLN GLU ILE LEU GLU SEQRES 20 A 312 ALA GLU LEU HIS PHE PRO ALA HIS VAL SER PRO ASP CYS SEQRES 21 A 312 CYS ALA LEU ILE ARG ARG CYS LEU ALA PRO LYS PRO SER SEQRES 22 A 312 SER ARG PRO SER LEU GLU GLU ILE LEU LEU ASP PRO TRP SEQRES 23 A 312 MET GLN THR PRO ALA GLU ASP VAL PRO LEU ASN PRO SER SEQRES 24 A 312 LYS GLY GLY PRO ALA PRO LEU ALA TRP SER LEU LEU PRO HET 3YR B 401 28 HET 3YR A 401 28 HET PO4 A 402 5 HETNAM 3YR 2-(2,6-DIFLUOROPHENYL)-N-{4-[(3S)-PYRROLIDIN-3- HETNAM 2 3YR YLOXY]PYRIDIN-3-YL}-1,3-THIAZOLE-4-CARBOXAMIDE HETNAM PO4 PHOSPHATE ION FORMUL 3 3YR 2(C19 H16 F2 N4 O2 S) FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *77(H2 O) HELIX 1 AA1 ALA B 27 GLU B 31 1 5 HELIX 2 AA2 PRO B 81 ALA B 92 1 12 HELIX 3 AA3 LEU B 125 GLY B 133 1 9 HELIX 4 AA4 GLY B 136 ARG B 157 1 22 HELIX 5 AA5 LYS B 165 GLU B 167 5 3 HELIX 6 AA6 ASP B 182 GLY B 186 5 5 HELIX 7 AA7 THR B 200 SER B 204 5 5 HELIX 8 AA8 PRO B 205 HIS B 212 1 8 HELIX 9 AA9 HIS B 215 GLY B 234 1 20 HELIX 10 AB1 ARG B 240 ALA B 247 1 8 HELIX 11 AB2 SER B 256 LEU B 267 1 12 HELIX 12 AB3 LYS B 270 ARG B 274 5 5 HELIX 13 AB4 SER B 276 LEU B 282 1 7 HELIX 14 AB5 ASP B 283 GLN B 287 5 5 HELIX 15 AB6 GLU A 83 GLY A 91 1 9 HELIX 16 AB7 LEU A 125 GLY A 133 1 9 HELIX 17 AB8 GLY A 136 SER A 156 1 21 HELIX 18 AB9 LYS A 165 GLU A 167 5 3 HELIX 19 AC1 THR A 200 SER A 204 5 5 HELIX 20 AC2 PRO A 205 HIS A 212 1 8 HELIX 21 AC3 HIS A 215 GLY A 234 1 20 HELIX 22 AC4 ARG A 240 ALA A 247 1 8 HELIX 23 AC5 SER A 256 LEU A 267 1 12 HELIX 24 AC6 LYS A 270 ARG A 274 5 5 HELIX 25 AC7 SER A 276 LEU A 282 1 7 SHEET 1 AA1 5 TYR B 32 GLY B 39 0 SHEET 2 AA1 5 THR B 45 ARG B 51 -1 O ALA B 48 N GLY B 35 SHEET 3 AA1 5 GLN B 57 VAL B 62 -1 O VAL B 62 N THR B 45 SHEET 4 AA1 5 MET B 113 GLU B 117 -1 O LEU B 116 N ALA B 59 SHEET 5 AA1 5 LEU B 102 PHE B 106 -1 N LEU B 103 O VAL B 115 SHEET 1 AA2 3 ALA B 122 ASP B 124 0 SHEET 2 AA2 3 ILE B 169 ASP B 172 -1 O ILE B 171 N GLN B 123 SHEET 3 AA2 3 CYS B 177 LEU B 180 -1 O LYS B 179 N LEU B 170 SHEET 1 AA3 2 VAL B 159 VAL B 160 0 SHEET 2 AA3 2 ALA B 187 LEU B 188 -1 O ALA B 187 N VAL B 160 SHEET 1 AA4 5 ARG A 33 GLY A 41 0 SHEET 2 AA4 5 GLY A 44 HIS A 50 -1 O VAL A 46 N LEU A 38 SHEET 3 AA4 5 VAL A 58 VAL A 62 -1 O ILE A 60 N PHE A 47 SHEET 4 AA4 5 MET A 113 GLU A 117 -1 O LEU A 116 N ALA A 59 SHEET 5 AA4 5 LEU A 102 TRP A 105 -1 N LEU A 103 O VAL A 115 SHEET 1 AA5 3 ALA A 122 ASP A 124 0 SHEET 2 AA5 3 ILE A 169 ASP A 172 -1 O ILE A 171 N GLN A 123 SHEET 3 AA5 3 CYS A 177 LEU A 180 -1 O LYS A 179 N LEU A 170 CISPEP 1 GLY B 94 GLY B 95 0 -22.45 CISPEP 2 LEU B 120 PRO B 121 0 5.46 CISPEP 3 LEU A 120 PRO A 121 0 -10.83 SITE 1 AC1 13 PHE B 43 VAL B 46 ALA B 59 LYS B 61 SITE 2 AC1 13 LEU B 116 GLU B 117 ARG B 118 ALA B 122 SITE 3 AC1 13 ASP B 124 GLU B 167 LEU B 170 ILE B 181 SITE 4 AC1 13 ASP B 182 SITE 1 AC2 13 PHE A 43 ALA A 59 LYS A 61 LEU A 116 SITE 2 AC2 13 GLU A 117 ARG A 118 ALA A 122 GLU A 167 SITE 3 AC2 13 LEU A 170 ILE A 181 ASP A 182 PO4 A 402 SITE 4 AC2 13 HOH A 529 SITE 1 AC3 4 ASP A 124 GLU A 167 3YR A 401 THR B 195 CRYST1 142.265 142.265 61.750 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007029 0.004058 0.000000 0.00000 SCALE2 0.000000 0.008117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016194 0.00000