HEADER TRANSFERASE 11-DEC-14 4X95 TITLE CRYSTAL STRUCTURE OF FULLY GLYCOSYLATED LYSOSOMAL PHOSPHOLIPASE A2 IN TITLE 2 COMPLEX WITH METHYL ARACHIDONYL FLUOROPHOSPHONATE (MAFP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP XV PHOSPHOLIPASE A2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-412; COMPND 5 SYNONYM: 1-O-ACYLCERAMIDE SYNTHASE,ACS,LCAT-LIKE LYSOPHOSPHOLIPASE, COMPND 6 LLPL,LYSOPHOSPHOLIPASE 3,LYSOSOMAL PHOSPHOLIPASE A2,LPLA2; COMPND 7 EC: 2.3.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLA2G15, LYPLA3, UNQ341/PRO540; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS HYDROLASE, PHOSPHOLIPASE, MAFP, ACYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GLUKHOVA,J.J.G.TESMER REVDAT 7 30-OCT-24 4X95 1 REMARK REVDAT 6 27-SEP-23 4X95 1 HETSYN REVDAT 5 29-JUL-20 4X95 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 04-DEC-19 4X95 1 REMARK REVDAT 3 22-NOV-17 4X95 1 REMARK REVDAT 2 13-SEP-17 4X95 1 SOURCE REMARK REVDAT 1 25-MAR-15 4X95 0 JRNL AUTH A.GLUKHOVA,V.HINKOVSKA-GALCHEVA,R.KELLY,A.ABE,J.A.SHAYMAN, JRNL AUTH 2 J.J.TESMER JRNL TITL STRUCTURE AND FUNCTION OF LYSOSOMAL PHOSPHOLIPASE A2 AND JRNL TITL 2 LECITHIN:CHOLESTEROL ACYLTRANSFERASE. JRNL REF NAT COMMUN V. 6 6250 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25727495 JRNL DOI 10.1038/NCOMMS7250 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 49.5 REMARK 3 NUMBER OF REFLECTIONS : 11420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 150.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 42.72000 REMARK 3 B22 (A**2) : -17.63000 REMARK 3 B33 (A**2) : -25.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.736 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.407 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 54.643 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6408 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5943 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8750 ; 1.020 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13635 ; 0.746 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 750 ; 4.998 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;29.967 ;23.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 998 ;14.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;11.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 967 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7078 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1491 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3006 ; 2.627 ;10.608 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3005 ; 2.626 ;10.607 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3754 ; 4.455 ;15.904 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 377 B 4 377 23133 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1670 8.8001 22.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.1909 REMARK 3 T33: 0.3918 T12: -0.0128 REMARK 3 T13: -0.0677 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.0226 L22: 3.0118 REMARK 3 L33: 2.0959 L12: -0.3623 REMARK 3 L13: -0.7027 L23: 0.4418 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.1090 S13: -0.0473 REMARK 3 S21: 0.1205 S22: -0.0758 S23: 0.0598 REMARK 3 S31: -0.0095 S32: -0.0307 S33: 0.0655 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 386 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4359 31.3639 -6.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.4903 REMARK 3 T33: 0.9609 T12: -0.2198 REMARK 3 T13: -0.0156 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 1.5017 L22: 2.3590 REMARK 3 L33: 2.5926 L12: -0.4384 REMARK 3 L13: 0.1183 L23: -0.3610 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.1319 S13: 0.1752 REMARK 3 S21: -0.0073 S22: -0.0516 S23: -0.7063 REMARK 3 S31: -0.4737 S32: 0.5098 S33: 0.0720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12079 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.080 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 49.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 4.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA CITRATE PH 3.5-4, 20% PEG REMARK 280 3350, AND 100 MM NACL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.63750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.10750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.63750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.10750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 379 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 52 -62.41 74.63 REMARK 500 SER A 99 -86.95 -49.62 REMARK 500 TYR A 104 -82.18 -125.78 REMARK 500 GLU A 121 -85.40 -118.57 REMARK 500 SER A 165 -127.78 50.12 REMARK 500 THR A 329 -58.94 -127.34 REMARK 500 VAL B 52 -60.75 73.69 REMARK 500 SER B 99 -87.06 -49.32 REMARK 500 TYR B 104 -82.34 -125.74 REMARK 500 GLU B 121 -85.56 -118.37 REMARK 500 SER B 165 -127.99 49.91 REMARK 500 THR B 329 -58.61 -127.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAY A 407 REMARK 610 MAY B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X90 RELATED DB: PDB REMARK 900 RELATED ID: 4X91 RELATED DB: PDB REMARK 900 RELATED ID: 4X92 RELATED DB: PDB REMARK 900 RELATED ID: 4X93 RELATED DB: PDB REMARK 900 RELATED ID: 4X94 RELATED DB: PDB REMARK 900 RELATED ID: 4X96 RELATED DB: PDB REMARK 900 RELATED ID: 4X97 RELATED DB: PDB DBREF 4X95 A 1 379 UNP Q8NCC3 PAG15_HUMAN 34 412 DBREF 4X95 B 1 379 UNP Q8NCC3 PAG15_HUMAN 34 412 SEQADV 4X95 GLY A 0 UNP Q8NCC3 CLONING ARTIFACT SEQADV 4X95 GLY B 0 UNP Q8NCC3 CLONING ARTIFACT SEQRES 1 A 380 GLY ALA GLY ARG HIS PRO PRO VAL VAL LEU VAL PRO GLY SEQRES 2 A 380 ASP LEU GLY ASN GLN LEU GLU ALA LYS LEU ASP LYS PRO SEQRES 3 A 380 THR VAL VAL HIS TYR LEU CYS SER LYS LYS THR GLU SER SEQRES 4 A 380 TYR PHE THR ILE TRP LEU ASN LEU GLU LEU LEU LEU PRO SEQRES 5 A 380 VAL ILE ILE ASP CYS TRP ILE ASP ASN ILE ARG LEU VAL SEQRES 6 A 380 TYR ASN LYS THR SER ARG ALA THR GLN PHE PRO ASP GLY SEQRES 7 A 380 VAL ASP VAL ARG VAL PRO GLY PHE GLY LYS THR PHE SER SEQRES 8 A 380 LEU GLU PHE LEU ASP PRO SER LYS SER SER VAL GLY SER SEQRES 9 A 380 TYR PHE HIS THR MET VAL GLU SER LEU VAL GLY TRP GLY SEQRES 10 A 380 TYR THR ARG GLY GLU ASP VAL ARG GLY ALA PRO TYR ASP SEQRES 11 A 380 TRP ARG ARG ALA PRO ASN GLU ASN GLY PRO TYR PHE LEU SEQRES 12 A 380 ALA LEU ARG GLU MET ILE GLU GLU MET TYR GLN LEU TYR SEQRES 13 A 380 GLY GLY PRO VAL VAL LEU VAL ALA HIS SER MET GLY ASN SEQRES 14 A 380 MET TYR THR LEU TYR PHE LEU GLN ARG GLN PRO GLN ALA SEQRES 15 A 380 TRP LYS ASP LYS TYR ILE ARG ALA PHE VAL SER LEU GLY SEQRES 16 A 380 ALA PRO TRP GLY GLY VAL ALA LYS THR LEU ARG VAL LEU SEQRES 17 A 380 ALA SER GLY ASP ASN ASN ARG ILE PRO VAL ILE GLY PRO SEQRES 18 A 380 LEU LYS ILE ARG GLU GLN GLN ARG SER ALA VAL SER THR SEQRES 19 A 380 SER TRP LEU LEU PRO TYR ASN TYR THR TRP SER PRO GLU SEQRES 20 A 380 LYS VAL PHE VAL GLN THR PRO THR ILE ASN TYR THR LEU SEQRES 21 A 380 ARG ASP TYR ARG LYS PHE PHE GLN ASP ILE GLY PHE GLU SEQRES 22 A 380 ASP GLY TRP LEU MET ARG GLN ASP THR GLU GLY LEU VAL SEQRES 23 A 380 GLU ALA THR MET PRO PRO GLY VAL GLN LEU HIS CYS LEU SEQRES 24 A 380 TYR GLY THR GLY VAL PRO THR PRO ASP SER PHE TYR TYR SEQRES 25 A 380 GLU SER PHE PRO ASP ARG ASP PRO LYS ILE CYS PHE GLY SEQRES 26 A 380 ASP GLY ASP GLY THR VAL ASN LEU LYS SER ALA LEU GLN SEQRES 27 A 380 CYS GLN ALA TRP GLN SER ARG GLN GLU HIS GLN VAL LEU SEQRES 28 A 380 LEU GLN GLU LEU PRO GLY SER GLU HIS ILE GLU MET LEU SEQRES 29 A 380 ALA ASN ALA THR THR LEU ALA TYR LEU LYS ARG VAL LEU SEQRES 30 A 380 LEU GLY PRO SEQRES 1 B 380 GLY ALA GLY ARG HIS PRO PRO VAL VAL LEU VAL PRO GLY SEQRES 2 B 380 ASP LEU GLY ASN GLN LEU GLU ALA LYS LEU ASP LYS PRO SEQRES 3 B 380 THR VAL VAL HIS TYR LEU CYS SER LYS LYS THR GLU SER SEQRES 4 B 380 TYR PHE THR ILE TRP LEU ASN LEU GLU LEU LEU LEU PRO SEQRES 5 B 380 VAL ILE ILE ASP CYS TRP ILE ASP ASN ILE ARG LEU VAL SEQRES 6 B 380 TYR ASN LYS THR SER ARG ALA THR GLN PHE PRO ASP GLY SEQRES 7 B 380 VAL ASP VAL ARG VAL PRO GLY PHE GLY LYS THR PHE SER SEQRES 8 B 380 LEU GLU PHE LEU ASP PRO SER LYS SER SER VAL GLY SER SEQRES 9 B 380 TYR PHE HIS THR MET VAL GLU SER LEU VAL GLY TRP GLY SEQRES 10 B 380 TYR THR ARG GLY GLU ASP VAL ARG GLY ALA PRO TYR ASP SEQRES 11 B 380 TRP ARG ARG ALA PRO ASN GLU ASN GLY PRO TYR PHE LEU SEQRES 12 B 380 ALA LEU ARG GLU MET ILE GLU GLU MET TYR GLN LEU TYR SEQRES 13 B 380 GLY GLY PRO VAL VAL LEU VAL ALA HIS SER MET GLY ASN SEQRES 14 B 380 MET TYR THR LEU TYR PHE LEU GLN ARG GLN PRO GLN ALA SEQRES 15 B 380 TRP LYS ASP LYS TYR ILE ARG ALA PHE VAL SER LEU GLY SEQRES 16 B 380 ALA PRO TRP GLY GLY VAL ALA LYS THR LEU ARG VAL LEU SEQRES 17 B 380 ALA SER GLY ASP ASN ASN ARG ILE PRO VAL ILE GLY PRO SEQRES 18 B 380 LEU LYS ILE ARG GLU GLN GLN ARG SER ALA VAL SER THR SEQRES 19 B 380 SER TRP LEU LEU PRO TYR ASN TYR THR TRP SER PRO GLU SEQRES 20 B 380 LYS VAL PHE VAL GLN THR PRO THR ILE ASN TYR THR LEU SEQRES 21 B 380 ARG ASP TYR ARG LYS PHE PHE GLN ASP ILE GLY PHE GLU SEQRES 22 B 380 ASP GLY TRP LEU MET ARG GLN ASP THR GLU GLY LEU VAL SEQRES 23 B 380 GLU ALA THR MET PRO PRO GLY VAL GLN LEU HIS CYS LEU SEQRES 24 B 380 TYR GLY THR GLY VAL PRO THR PRO ASP SER PHE TYR TYR SEQRES 25 B 380 GLU SER PHE PRO ASP ARG ASP PRO LYS ILE CYS PHE GLY SEQRES 26 B 380 ASP GLY ASP GLY THR VAL ASN LEU LYS SER ALA LEU GLN SEQRES 27 B 380 CYS GLN ALA TRP GLN SER ARG GLN GLU HIS GLN VAL LEU SEQRES 28 B 380 LEU GLN GLU LEU PRO GLY SER GLU HIS ILE GLU MET LEU SEQRES 29 B 380 ALA ASN ALA THR THR LEU ALA TYR LEU LYS ARG VAL LEU SEQRES 30 B 380 LEU GLY PRO HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG A 404 14 HET NAG A 405 14 HET NAG A 406 14 HET MAY A 407 7 HET NAG B 404 14 HET NAG B 405 14 HET NAG B 406 14 HET MAY B 407 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAY METHYL ARACHIDONYL FLUOROPHOSPHONATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAY MAFP FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 8 MAY 2(C21 H36 F O2 P) HELIX 1 AA1 ASN A 45 LEU A 50 5 6 HELIX 2 AA2 VAL A 52 ARG A 62 1 11 HELIX 3 AA3 THR A 88 PHE A 93 1 6 HELIX 4 AA4 SER A 99 SER A 103 5 5 HELIX 5 AA5 PHE A 105 TRP A 115 1 11 HELIX 6 AA6 ALA A 133 GLU A 136 5 4 HELIX 7 AA7 ASN A 137 GLY A 156 1 20 HELIX 8 AA8 SER A 165 ARG A 177 1 13 HELIX 9 AA9 PRO A 179 TYR A 186 1 8 HELIX 10 AB1 ALA A 201 GLY A 210 1 10 HELIX 11 AB2 GLY A 219 ALA A 230 1 12 HELIX 12 AB3 ALA A 230 LEU A 236 1 7 HELIX 13 AB4 ASP A 261 ILE A 269 1 9 HELIX 14 AB5 PHE A 271 GLU A 282 1 12 HELIX 15 AB6 ASN A 331 SER A 334 5 4 HELIX 16 AB7 ALA A 335 SER A 343 1 9 HELIX 17 AB8 ILE A 360 ALA A 364 5 5 HELIX 18 AB9 ASN A 365 GLY A 378 1 14 HELIX 19 AC1 ASN B 45 LEU B 50 5 6 HELIX 20 AC2 VAL B 52 ARG B 62 1 11 HELIX 21 AC3 THR B 88 PHE B 93 1 6 HELIX 22 AC4 SER B 99 SER B 103 5 5 HELIX 23 AC5 PHE B 105 TRP B 115 1 11 HELIX 24 AC6 ALA B 133 GLU B 136 5 4 HELIX 25 AC7 ASN B 137 GLY B 156 1 20 HELIX 26 AC8 SER B 165 ARG B 177 1 13 HELIX 27 AC9 PRO B 179 TYR B 186 1 8 HELIX 28 AD1 ALA B 201 GLY B 210 1 10 HELIX 29 AD2 GLY B 219 ALA B 230 1 12 HELIX 30 AD3 ALA B 230 LEU B 236 1 7 HELIX 31 AD4 ASP B 261 ILE B 269 1 9 HELIX 32 AD5 PHE B 271 GLU B 282 1 12 HELIX 33 AD6 ASN B 331 SER B 334 5 4 HELIX 34 AD7 ALA B 335 SER B 343 1 9 HELIX 35 AD8 ILE B 360 ALA B 364 5 5 HELIX 36 AD9 ASN B 365 GLY B 378 1 14 SHEET 1 AA1 6 VAL A 123 GLY A 125 0 SHEET 2 AA1 6 VAL A 7 VAL A 10 1 N LEU A 9 O ARG A 124 SHEET 3 AA1 6 VAL A 159 HIS A 164 1 O VAL A 162 N VAL A 8 SHEET 4 AA1 6 ILE A 187 LEU A 193 1 O VAL A 191 N LEU A 161 SHEET 5 AA1 6 LEU A 295 THR A 301 1 O HIS A 296 N SER A 192 SHEET 6 AA1 6 VAL A 349 PRO A 355 1 O LEU A 350 N LEU A 295 SHEET 1 AA2 3 PHE A 40 TRP A 43 0 SHEET 2 AA2 3 LEU A 18 LEU A 22 -1 N ALA A 20 O PHE A 40 SHEET 3 AA2 3 VAL A 78 ARG A 81 -1 O ARG A 81 N GLU A 19 SHEET 1 AA3 2 VAL A 64 ASN A 66 0 SHEET 2 AA3 2 ALA A 71 GLN A 73 -1 O GLN A 73 N VAL A 64 SHEET 1 AA4 4 ASN A 256 THR A 258 0 SHEET 2 AA4 4 VAL A 248 GLN A 251 -1 N PHE A 249 O TYR A 257 SHEET 3 AA4 4 THR A 305 TYR A 310 1 O PHE A 309 N PHE A 249 SHEET 4 AA4 4 LYS A 320 GLY A 324 -1 O CYS A 322 N ASP A 307 SHEET 1 AA5 6 VAL B 123 GLY B 125 0 SHEET 2 AA5 6 VAL B 7 VAL B 10 1 N LEU B 9 O ARG B 124 SHEET 3 AA5 6 VAL B 159 HIS B 164 1 O VAL B 162 N VAL B 8 SHEET 4 AA5 6 ILE B 187 LEU B 193 1 O VAL B 191 N LEU B 161 SHEET 5 AA5 6 LEU B 295 THR B 301 1 O HIS B 296 N SER B 192 SHEET 6 AA5 6 VAL B 349 PRO B 355 1 O LEU B 350 N LEU B 295 SHEET 1 AA6 3 PHE B 40 TRP B 43 0 SHEET 2 AA6 3 LEU B 18 LEU B 22 -1 N ALA B 20 O PHE B 40 SHEET 3 AA6 3 VAL B 78 ARG B 81 -1 O ARG B 81 N GLU B 19 SHEET 1 AA7 2 VAL B 64 ASN B 66 0 SHEET 2 AA7 2 ALA B 71 GLN B 73 -1 O GLN B 73 N VAL B 64 SHEET 1 AA8 4 ASN B 256 THR B 258 0 SHEET 2 AA8 4 VAL B 248 GLN B 251 -1 N PHE B 249 O TYR B 257 SHEET 3 AA8 4 THR B 305 TYR B 310 1 O PHE B 309 N PHE B 249 SHEET 4 AA8 4 LYS B 320 GLY B 324 -1 O CYS B 322 N ASP B 307 SSBOND 1 CYS A 32 CYS A 56 1555 1555 2.03 SSBOND 2 CYS B 32 CYS B 56 1555 1555 2.03 LINK ND2 ASN A 66 C1 NAG C 1 1555 1555 1.46 LINK OG SER A 165 P1 MAY A 407 1555 1555 1.63 LINK ND2 ASN A 240 C1 NAG A 404 1555 1555 1.47 LINK ND2 ASN A 256 C1 NAG A 405 1555 1555 1.46 LINK ND2 ASN A 365 C1 NAG A 406 1555 1555 1.45 LINK ND2 ASN B 66 C1 NAG D 1 1555 1555 1.48 LINK OG SER B 165 P1 MAY B 407 1555 1555 1.62 LINK ND2 ASN B 240 C1 NAG B 404 1555 1555 1.46 LINK ND2 ASN B 256 C1 NAG B 405 1555 1555 1.46 LINK ND2 ASN B 365 C1 NAG B 406 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 CISPEP 1 TRP A 43 LEU A 44 0 -2.93 CISPEP 2 PHE A 314 PRO A 315 0 -6.58 CISPEP 3 TRP B 43 LEU B 44 0 -2.93 CISPEP 4 PHE B 314 PRO B 315 0 -6.60 CRYST1 72.385 125.275 140.215 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007132 0.00000