HEADER OXIDOREDUCTASE 12-DEC-14 4XA8 TITLE CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE TITLE 2 FROM XANTHOBACTER AUTOTROPHICUS PY2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE NAD-BINDING; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOBACTER AUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 78245; SOURCE 4 STRAIN: ATCC BAA-1158 / PY2; SOURCE 5 GENE: XAUT_2571; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 2 NYSGRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.B.HANDING,O.A.GASIOROWSKA,I.G.SHABALIN,M.T.CYMBOROWSKI,J.BONANNO, AUTHOR 2 S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 3 (NYSGRC) REVDAT 5 27-SEP-23 4XA8 1 REMARK REVDAT 4 13-APR-22 4XA8 1 AUTHOR JRNL REVDAT 3 20-SEP-17 4XA8 1 REMARK REVDAT 2 30-SEP-15 4XA8 1 REMARK REVDAT 1 14-JAN-15 4XA8 0 JRNL AUTH K.B.HANDING,O.A.GASIOROWSKA,I.G.SHABALIN,M.T.CYMBOROWSKI, JRNL AUTH 2 J.BONANNO,S.C.ALMO,W.MINOR, JRNL AUTH 3 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID JRNL TITL 2 DEHYDROGENASE FROM XANTHOBACTER AUTOTROPHICUS PY2. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 22262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2335 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2264 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3186 ; 1.639 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5177 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 5.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;33.127 ;22.449 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;13.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 1.518 ; 2.130 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1203 ; 1.518 ; 2.128 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1502 ; 2.154 ; 3.183 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0320 -8.9340 -14.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1851 REMARK 3 T33: 0.0772 T12: 0.0122 REMARK 3 T13: 0.0181 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 6.1968 L22: 5.3818 REMARK 3 L33: 5.3379 L12: 3.6509 REMARK 3 L13: 0.6913 L23: -0.3052 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.0388 S13: 0.1806 REMARK 3 S21: -0.0573 S22: -0.0405 S23: 0.4234 REMARK 3 S31: 0.0303 S32: -0.5860 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8760 -6.5600 -5.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1556 REMARK 3 T33: 0.0097 T12: -0.0156 REMARK 3 T13: 0.0172 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.9812 L22: 6.0629 REMARK 3 L33: 7.3143 L12: 1.3352 REMARK 3 L13: -0.5296 L23: 0.6110 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: -0.1698 S13: 0.0071 REMARK 3 S21: 0.5111 S22: -0.1187 S23: 0.1579 REMARK 3 S31: -0.1245 S32: -0.2513 S33: 0.0573 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0000 -15.5490 -6.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.3145 REMARK 3 T33: 0.2616 T12: 0.0950 REMARK 3 T13: -0.0493 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.4051 L22: 8.4713 REMARK 3 L33: 12.3177 L12: -0.2269 REMARK 3 L13: 2.1787 L23: -2.2255 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.1181 S13: -0.0816 REMARK 3 S21: 0.7120 S22: 0.2056 S23: -1.1290 REMARK 3 S31: 0.3815 S32: 0.8439 S33: -0.2335 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1010 -6.3380 -39.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.1608 REMARK 3 T33: 0.1197 T12: -0.0006 REMARK 3 T13: -0.0161 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3591 L22: 2.3514 REMARK 3 L33: 3.8156 L12: 0.5816 REMARK 3 L13: -0.1345 L23: -1.9644 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0439 S13: 0.1206 REMARK 3 S21: 0.0224 S22: 0.0760 S23: 0.0423 REMARK 3 S31: 0.0528 S32: -0.1119 S33: -0.0664 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9050 -19.8640 -32.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1450 REMARK 3 T33: 0.1002 T12: 0.0339 REMARK 3 T13: -0.0070 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.6017 L22: 2.1217 REMARK 3 L33: 3.1029 L12: -0.2467 REMARK 3 L13: -0.1535 L23: -0.3469 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: -0.0848 S13: -0.1210 REMARK 3 S21: -0.0807 S22: 0.0198 S23: -0.0003 REMARK 3 S31: 0.0886 S32: 0.0135 S33: 0.0233 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9830 -9.6590 -23.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1629 REMARK 3 T33: 0.0532 T12: 0.0444 REMARK 3 T13: -0.0436 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 3.0384 L22: 2.1566 REMARK 3 L33: 1.0332 L12: -0.7960 REMARK 3 L13: 0.6545 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: -0.1784 S12: -0.4359 S13: 0.3471 REMARK 3 S21: 0.2756 S22: 0.1631 S23: -0.1816 REMARK 3 S31: -0.0079 S32: -0.0219 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 254 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5700 0.0690 -25.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1410 REMARK 3 T33: 0.1122 T12: 0.0284 REMARK 3 T13: -0.0329 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6904 L22: 3.4755 REMARK 3 L33: 1.6292 L12: -1.2883 REMARK 3 L13: -0.7293 L23: 0.5050 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: -0.0755 S13: 0.1967 REMARK 3 S21: 0.1877 S22: 0.0718 S23: -0.0414 REMARK 3 S31: -0.1530 S32: -0.1578 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0440 -21.2980 -13.0570 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.0904 REMARK 3 T33: 0.0914 T12: -0.0723 REMARK 3 T13: 0.0108 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.5131 L22: 6.4896 REMARK 3 L33: 6.5260 L12: -1.4887 REMARK 3 L13: 0.4514 L23: -1.9561 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.0375 S13: -0.4592 REMARK 3 S21: 0.2712 S22: 0.0218 S23: 0.1964 REMARK 3 S31: 0.9715 S32: -0.1446 S33: -0.0445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4XA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: 3KBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 11 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE, 0.5 REMARK 280 MM TCEP AND 10 MM NADH WERE MIXED WITH 0.2 UL OF THE TOP96 REMARK 280 CONDITION #34 (0.2M MAGNESIUM CHLORIDE, 6-HYDRATE, 0.1M HEPES, REMARK 280 25%W/V PEG 3350 PH=7.5) AND EQUILIBRATED AGAINST 1.5 M NACL REMARK 280 SOLUTION IN 96 WELL 3 DROP CRYSTALLIZATION PLATE (SWISSCI). REMARK 280 BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED WITH 1/50 V/V OF 1 REMARK 280 MG/ML TEV SOLUTION AT 289 K FOR 1 HOUR, VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.48350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.48350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.85700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.85700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.48350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.85700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.48350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.85700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.48350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 78 REMARK 465 GLY A 79 REMARK 465 VAL A 80 REMARK 465 ASP A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 83 REMARK 465 VAL A 84 REMARK 465 ALA A 85 REMARK 465 ASP A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 ARG A 317 REMARK 465 GLY A 318 REMARK 465 TYR A 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 6 OG REMARK 470 HIS A 61 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 ARG A 234 NE CZ NH1 NH2 REMARK 470 VAL A 313 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 58.51 39.04 REMARK 500 ALA A 233 -86.09 -91.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-015257 RELATED DB: TARGETTRACK DBREF 4XA8 A 1 319 UNP A7IIH0 A7IIH0_XANP2 1 319 SEQADV 4XA8 SER A 0 UNP A7IIH0 EXPRESSION TAG SEQRES 1 A 320 SER MET ASN GLU GLN ALA SER GLY ALA LEU VAL PHE TYR SEQRES 2 A 320 SER ALA VAL ASP ILE GLY GLN ASP TRP LYS SER ALA LEU SEQRES 3 A 320 GLN ALA ALA HIS PRO GLY LEU ASP VAL ARG ILE ALA ARG SEQRES 4 A 320 ALA GLY ASP GLY HIS VAL GLU GLY ASP PRO GLU GLU VAL SEQRES 5 A 320 ARG TYR ALA LEU VAL TRP LYS PRO PRO HIS GLY PHE PHE SEQRES 6 A 320 ALA ARG PHE PRO ASN LEU LYS LEU VAL ILE ASN LEU GLY SEQRES 7 A 320 ALA GLY VAL ASP ALA LEU VAL ALA ARG ASP ASP LEU PRO SEQRES 8 A 320 ASP VAL PRO VAL THR ARG LEU SER ASP PRO ASN MET SER SEQRES 9 A 320 GLN MET MET ALA SER PHE VAL LEU PHE CYS VAL LEU ARG SEQRES 10 A 320 HIS ALA ARG ASP ILE PRO THR PHE GLU ARG ALA GLN ARG SEQRES 11 A 320 GLU GLY ARG TRP HIS TYR VAL HIS PRO ARG THR ALA ALA SEQRES 12 A 320 GLU ILE ARG VAL GLY VAL LEU GLY LEU GLY ASP LEU GLY SEQRES 13 A 320 ALA ALA ALA ALA LEU GLU LEU ALA ARG HIS GLY PHE ASP SEQRES 14 A 320 VAL ARG GLY TRP SER ARG THR PRO LYS ALA LEU GLU GLY SEQRES 15 A 320 VAL SER CYS PHE HIS GLY LEU GLU ALA LEU PRO GLY PHE SEQRES 16 A 320 LEU ALA GLY SER GLU ILE VAL VAL VAL MET LEU PRO LEU SEQRES 17 A 320 THR PRO GLU THR ARG GLY LEU MET ASN ALA GLU ARG LEU SEQRES 18 A 320 ALA HIS LEU PRO ARG GLY ALA LYS PHE ILE ASN VAL ALA SEQRES 19 A 320 ARG GLY PRO VAL VAL ASP GLU ALA ALA LEU ILE ALA ALA SEQRES 20 A 320 LEU ARG SER GLY HIS ILE ALA GLU ALA THR LEU ASP VAL SEQRES 21 A 320 PHE GLU VAL GLU PRO LEU PRO VAL GLY SER PRO LEU TRP SEQRES 22 A 320 ALA MET ASP ASN VAL LEU VAL THR PRO HIS LEU ALA SER SEQRES 23 A 320 ILE ALA ILE PRO ARG THR ALA ALA PRO GLN ILE VAL GLU SEQRES 24 A 320 ASN ILE ARG ARG ILE GLU ALA GLY GLU PRO VAL LEU ASN SEQRES 25 A 320 GLN VAL ASP PRO ARG ARG GLY TYR FORMUL 2 HOH *173(H2 O) HELIX 1 AA1 ILE A 17 HIS A 29 1 13 HELIX 2 AA2 ASP A 47 GLU A 49 5 3 HELIX 3 AA3 GLY A 62 PHE A 67 5 6 HELIX 4 AA4 ASN A 101 ARG A 119 1 19 HELIX 5 AA5 ASP A 120 GLU A 130 1 11 HELIX 6 AA6 THR A 140 GLU A 143 5 4 HELIX 7 AA7 GLY A 152 HIS A 165 1 14 HELIX 8 AA8 ALA A 190 GLY A 197 1 8 HELIX 9 AA9 ASN A 216 LEU A 223 1 8 HELIX 10 AB1 ARG A 234 VAL A 238 5 5 HELIX 11 AB2 ASP A 239 SER A 249 1 11 HELIX 12 AB3 ILE A 288 ALA A 305 1 18 SHEET 1 AA1 5 ASP A 33 ILE A 36 0 SHEET 2 AA1 5 ALA A 8 TYR A 12 1 N LEU A 9 O ASP A 33 SHEET 3 AA1 5 VAL A 51 VAL A 56 1 O ARG A 52 N ALA A 8 SHEET 4 AA1 5 LEU A 72 ASN A 75 1 O ILE A 74 N ALA A 54 SHEET 5 AA1 5 VAL A 94 ARG A 96 1 O THR A 95 N ASN A 75 SHEET 1 AA2 7 SER A 183 HIS A 186 0 SHEET 2 AA2 7 ASP A 168 SER A 173 1 N GLY A 171 O PHE A 185 SHEET 3 AA2 7 ARG A 145 LEU A 149 1 N VAL A 146 O ARG A 170 SHEET 4 AA2 7 ILE A 200 VAL A 203 1 O VAL A 202 N GLY A 147 SHEET 5 AA2 7 ALA A 227 ASN A 231 1 O ILE A 230 N VAL A 203 SHEET 6 AA2 7 ILE A 252 LEU A 257 1 O THR A 256 N ASN A 231 SHEET 7 AA2 7 VAL A 277 VAL A 279 1 O LEU A 278 N LEU A 257 CISPEP 1 GLU A 263 PRO A 264 0 -4.02 CRYST1 58.762 63.714 154.967 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006453 0.00000