HEADER HYDROLASE 14-DEC-14 4XAG TITLE CYCLES OF DESTABILIZATION AND REPAIR UNDERLIE THE EVOLUTION OF NEW TITLE 2 ENZYME FUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE VARIANT PTE-R6; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYNAMICS, EVOLUTION, PHOSPHOTRIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,E.CAMPBELL,M.KALTENBACH,N.TOKURIKI REVDAT 6 15-NOV-23 4XAG 1 REMARK REVDAT 5 27-SEP-23 4XAG 1 REMARK LINK REVDAT 4 26-OCT-16 4XAG 1 JRNL REVDAT 3 28-SEP-16 4XAG 1 JRNL REVDAT 2 07-SEP-16 4XAG 1 JRNL REVDAT 1 16-DEC-15 4XAG 0 JRNL AUTH E.CAMPBELL,M.KALTENBACH,G.J.CORREY,P.D.CARR,B.T.POREBSKI, JRNL AUTH 2 E.K.LIVINGSTONE,L.AFRIAT-JURNOU,A.M.BUCKLE,M.WEIK, JRNL AUTH 3 F.HOLLFELDER,N.TOKURIKI,C.J.JACKSON JRNL TITL THE ROLE OF PROTEIN DYNAMICS IN THE EVOLUTION OF NEW ENZYME JRNL TITL 2 FUNCTION. JRNL REF NAT.CHEM.BIOL. V. 12 944 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27618189 JRNL DOI 10.1038/NCHEMBIO.2175 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 87362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4172 - 4.9684 1.00 2988 157 0.1659 0.2217 REMARK 3 2 4.9684 - 3.9447 1.00 2830 175 0.1366 0.1606 REMARK 3 3 3.9447 - 3.4464 1.00 2813 150 0.1425 0.1648 REMARK 3 4 3.4464 - 3.1314 1.00 2843 128 0.1535 0.2102 REMARK 3 5 3.1314 - 2.9071 1.00 2793 146 0.1563 0.2053 REMARK 3 6 2.9071 - 2.7357 1.00 2815 124 0.1526 0.1892 REMARK 3 7 2.7357 - 2.5987 1.00 2777 142 0.1505 0.1948 REMARK 3 8 2.5987 - 2.4856 1.00 2766 163 0.1506 0.1860 REMARK 3 9 2.4856 - 2.3900 1.00 2749 142 0.1518 0.1743 REMARK 3 10 2.3900 - 2.3075 1.00 2778 157 0.1492 0.1517 REMARK 3 11 2.3075 - 2.2354 1.00 2758 137 0.1498 0.1994 REMARK 3 12 2.2354 - 2.1715 1.00 2734 158 0.1552 0.1879 REMARK 3 13 2.1715 - 2.1143 1.00 2764 147 0.1567 0.1760 REMARK 3 14 2.1143 - 2.0627 1.00 2729 150 0.1743 0.2110 REMARK 3 15 2.0627 - 2.0158 1.00 2767 149 0.1663 0.2306 REMARK 3 16 2.0158 - 1.9729 1.00 2761 144 0.1693 0.2278 REMARK 3 17 1.9729 - 1.9335 1.00 2733 133 0.1771 0.2222 REMARK 3 18 1.9335 - 1.8970 1.00 2760 140 0.1764 0.2106 REMARK 3 19 1.8970 - 1.8631 1.00 2748 153 0.1809 0.2280 REMARK 3 20 1.8631 - 1.8315 1.00 2753 128 0.1780 0.2267 REMARK 3 21 1.8315 - 1.8020 1.00 2738 154 0.1912 0.2313 REMARK 3 22 1.8020 - 1.7743 1.00 2719 146 0.1966 0.2426 REMARK 3 23 1.7743 - 1.7482 1.00 2761 125 0.1956 0.2233 REMARK 3 24 1.7482 - 1.7235 1.00 2745 148 0.2120 0.2720 REMARK 3 25 1.7235 - 1.7002 1.00 2711 154 0.2208 0.2486 REMARK 3 26 1.7002 - 1.6782 1.00 2740 152 0.2184 0.2446 REMARK 3 27 1.6782 - 1.6572 1.00 2712 145 0.2268 0.2697 REMARK 3 28 1.6572 - 1.6372 1.00 2732 158 0.2385 0.2843 REMARK 3 29 1.6372 - 1.6182 1.00 2733 133 0.2340 0.2762 REMARK 3 30 1.6182 - 1.6000 1.00 2731 143 0.2451 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 5433 REMARK 3 ANGLE : 1.779 7428 REMARK 3 CHIRALITY : 0.092 872 REMARK 3 PLANARITY : 0.009 969 REMARK 3 DIHEDRAL : 14.055 2008 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12120 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CACODYLATE, 30% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.94300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.15200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.94300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.15200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 MET G 33 REMARK 465 ARG G 363 REMARK 465 ALA G 364 REMARK 465 SER G 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 MPD A 2403 O4 MPD A 2405 1.76 REMARK 500 OG1 THR A 350 O2 MPD A 2405 1.80 REMARK 500 O HOH A 2639 O HOH A 2705 1.96 REMARK 500 OD2 ASP A 301 O HOH A 2639 2.04 REMARK 500 O HOH A 2591 O HOH A 2696 2.05 REMARK 500 O HOH A 2595 O HOH A 2680 2.05 REMARK 500 NH2 ARG A 337 O HOH A 2717 2.11 REMARK 500 OD1 ASN G 38 O HOH G 626 2.14 REMARK 500 O HOH G 541 O HOH G 710 2.15 REMARK 500 O HOH G 543 O HOH G 545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 541 O HOH G 543 4454 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 356 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG G 225 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 -13.68 -171.04 REMARK 500 SER A 61 -149.27 -144.06 REMARK 500 TRP A 69 58.16 -145.45 REMARK 500 VAL A 101 31.06 -95.73 REMARK 500 ARG A 108 124.61 -35.32 REMARK 500 THR A 128 -165.79 -112.88 REMARK 500 TRP A 131 -145.22 -97.18 REMARK 500 GLU A 159 -132.53 54.05 REMARK 500 VAL A 176 110.97 85.38 REMARK 500 SER A 258 89.55 -158.60 REMARK 500 LEU A 262 55.79 -102.61 REMARK 500 ALA A 270 34.25 -95.48 REMARK 500 LEU A 271 -8.44 -157.97 REMARK 500 LEU A 272 -84.43 -123.20 REMARK 500 SER A 308 39.98 -86.85 REMARK 500 SER G 61 -147.85 -147.48 REMARK 500 THR G 128 -169.95 -109.91 REMARK 500 TRP G 131 -152.12 -96.02 REMARK 500 GLU G 159 -131.40 51.21 REMARK 500 VAL G 176 114.29 86.30 REMARK 500 ARG G 207 -110.81 -100.06 REMARK 500 SER G 308 39.63 -87.78 REMARK 500 SER G 308 38.21 -86.52 REMARK 500 VAL G 351 -58.42 -122.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 116.9 REMARK 620 3 KCX A 169 OQ2 94.8 85.8 REMARK 620 4 ASP A 301 OD1 87.2 91.9 177.4 REMARK 620 5 HOH A2705 O 113.1 130.0 90.8 89.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 97.6 REMARK 620 3 HIS A 230 NE2 115.5 97.8 REMARK 620 4 HOH A2705 O 106.7 131.6 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 55 NE2 REMARK 620 2 HIS G 57 NE2 118.2 REMARK 620 3 KCX G 169 OQ2 96.9 87.5 REMARK 620 4 ASP G 301 OD1 85.0 88.5 176.0 REMARK 620 5 CAC G 401 O1 111.6 130.1 89.9 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX G 169 OQ1 REMARK 620 2 HIS G 201 ND1 94.9 REMARK 620 3 HIS G 230 NE2 112.3 100.9 REMARK 620 4 CAC G 401 O1 104.6 139.6 103.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC G 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD G 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBE RELATED DB: PDB REMARK 900 MUTANT OF SAME PROTEIN REMARK 900 RELATED ID: 4PBF RELATED DB: PDB REMARK 900 RELATED ID: 4PCN RELATED DB: PDB REMARK 900 RELATED ID: 4PCP RELATED DB: PDB REMARK 900 RELATED ID: 4XAF RELATED DB: PDB REMARK 900 RELATED ID: 4XAY RELATED DB: PDB REMARK 900 RELATED ID: 4XAZ RELATED DB: PDB REMARK 900 RELATED ID: 4XD3 RELATED DB: PDB REMARK 900 RELATED ID: 4XD4 RELATED DB: PDB REMARK 900 RELATED ID: 4XD5 RELATED DB: PDB REMARK 900 RELATED ID: 4XD6 RELATED DB: PDB DBREF1 4XAG A 33 365 UNP A0A060GPQ0_BREDI DBREF2 4XAG A A0A060GPQ0 1 333 DBREF1 4XAG G 33 365 UNP A0A060GPQ0_BREDI DBREF2 4XAG G A0A060GPQ0 1 333 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS SEQRES 14 A 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA LEU LEU GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 LEU SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 G 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 G 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 G 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 G 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 G 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 G 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 G 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 G 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 G 333 SER MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 G 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 G 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 G 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 G 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS SEQRES 14 G 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 G 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 G 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 G 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 G 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 G 333 SER ALA THR ALA LEU LEU GLY SER ARG SER TRP GLN THR SEQRES 20 G 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 G 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 G 333 LEU SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 G 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 G 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 G 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 G 333 LEU SER PRO THR LEU ARG ALA SER MODRES 4XAG KCX A 169 LYS MODIFIED RESIDUE MODRES 4XAG KCX G 169 LYS MODIFIED RESIDUE HET KCX A 169 12 HET KCX G 169 12 HET ZN A2401 1 HET ZN A2402 1 HET MPD A2403 8 HET MPD A2404 8 HET MPD A2405 8 HET CAC G 401 5 HET ZN G 402 1 HET ZN G 403 1 HET MPD G 404 8 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MPD 4(C6 H14 O2) FORMUL 8 CAC C2 H6 AS O2 1- FORMUL 12 HOH *468(H2 O) HELIX 1 AA1 SER A 47 ALA A 49 5 3 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 GLY A 208 GLU A 219 1 12 HELIX 11 AB2 SER A 222 SER A 224 5 3 HELIX 12 AB3 HIS A 230 THR A 234 5 5 HELIX 13 AB4 ASP A 236 ARG A 246 1 11 HELIX 14 AB5 SER A 276 GLN A 290 1 15 HELIX 15 AB6 TYR A 292 LYS A 294 5 3 HELIX 16 AB7 ASN A 312 ASN A 321 1 10 HELIX 17 AB8 ASP A 323 MET A 325 5 3 HELIX 18 AB9 ALA A 326 ARG A 331 1 6 HELIX 19 AC1 ARG A 331 LYS A 339 1 9 HELIX 20 AC2 PRO A 342 VAL A 351 1 10 HELIX 21 AC3 VAL A 351 SER A 359 1 9 HELIX 22 AC4 THR G 45 GLY G 50 1 6 HELIX 23 AC5 GLY G 64 TRP G 69 1 6 HELIX 24 AC6 PRO G 70 GLY G 74 5 5 HELIX 25 AC7 SER G 75 ALA G 93 1 19 HELIX 26 AC8 THR G 103 GLY G 107 5 5 HELIX 27 AC9 ASP G 109 ASP G 121 1 13 HELIX 28 AD1 PRO G 135 LEU G 140 1 6 HELIX 29 AD2 SER G 142 TYR G 156 1 15 HELIX 30 AD3 THR G 177 GLY G 195 1 19 HELIX 31 AD4 GLY G 208 GLU G 219 1 12 HELIX 32 AD5 SER G 222 SER G 224 5 3 HELIX 33 AD6 HIS G 230 THR G 234 5 5 HELIX 34 AD7 ASP G 236 ARG G 246 1 11 HELIX 35 AD8 ASN G 265 GLY G 273 1 9 HELIX 36 AD9 SER G 276 GLN G 290 1 15 HELIX 37 AE1 TYR G 292 LYS G 294 5 3 HELIX 38 AE2 ASN G 312 ASN G 321 1 10 HELIX 39 AE3 ASP G 323 MET G 325 5 3 HELIX 40 AE4 ALA G 326 ARG G 331 1 6 HELIX 41 AE5 ARG G 331 LYS G 339 1 9 HELIX 42 AE6 PRO G 342 VAL G 351 1 10 HELIX 43 AE7 VAL G 351 SER G 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 LEU A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 LEU A 130 0 SHEET 2 AA4 6 ILE A 167 THR A 173 1 O KCX A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 ALA A 203 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N VAL A 226 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ILE G 37 THR G 39 0 SHEET 2 AA5 2 GLY G 42 ILE G 44 -1 O ILE G 44 N ILE G 37 SHEET 1 AA6 3 THR G 52 GLU G 56 0 SHEET 2 AA6 3 THR G 97 ASP G 100 1 O THR G 97 N LEU G 53 SHEET 3 AA6 3 HIS G 123 VAL G 125 1 O HIS G 123 N ILE G 98 SHEET 1 AA7 6 ALA G 127 LEU G 130 0 SHEET 2 AA7 6 ILE G 167 ALA G 171 1 O KCX G 169 N THR G 128 SHEET 3 AA7 6 VAL G 198 HIS G 201 1 O THR G 199 N ILE G 168 SHEET 4 AA7 6 VAL G 226 ILE G 228 1 O CYS G 227 N VAL G 198 SHEET 5 AA7 6 LEU G 249 LEU G 252 1 O LEU G 249 N VAL G 226 SHEET 6 AA7 6 ILE G 296 VAL G 298 1 O LEU G 297 N LEU G 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.34 LINK C KCX A 169 N VAL A 170 1555 1555 1.33 LINK C ILE G 168 N KCX G 169 1555 1555 1.33 LINK C KCX G 169 N VAL G 170 1555 1555 1.33 LINK NE2 HIS A 55 ZN ZN A2401 1555 1555 2.12 LINK NE2 HIS A 57 ZN ZN A2401 1555 1555 2.06 LINK OQ2 KCX A 169 ZN ZN A2401 1555 1555 2.17 LINK OQ1 KCX A 169 ZN ZN A2402 1555 1555 1.98 LINK ND1 HIS A 201 ZN ZN A2402 1555 1555 1.97 LINK NE2 HIS A 230 ZN ZN A2402 1555 1555 2.03 LINK OD1 ASP A 301 ZN ZN A2401 1555 1555 2.15 LINK ZN ZN A2401 O HOH A2705 1555 1555 2.05 LINK ZN ZN A2402 O HOH A2705 1555 1555 2.06 LINK NE2 HIS G 55 ZN ZN G 402 1555 1555 2.06 LINK NE2 HIS G 57 ZN ZN G 402 1555 1555 2.09 LINK OQ2 KCX G 169 ZN ZN G 402 1555 1555 2.17 LINK OQ1 KCX G 169 ZN ZN G 403 1555 1555 1.94 LINK ND1 HIS G 201 ZN ZN G 403 1555 1555 1.93 LINK NE2 HIS G 230 ZN ZN G 403 1555 1555 2.02 LINK OD1 ASP G 301 ZN ZN G 402 1555 1555 2.19 LINK O1 CAC G 401 ZN ZN G 402 1555 1555 2.00 LINK O1 CAC G 401 ZN ZN G 403 1555 1555 2.05 SITE 1 AC1 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 6 ZN A2402 HOH A2705 SITE 1 AC2 6 KCX A 169 HIS A 201 HIS A 230 ZN A2401 SITE 2 AC2 6 MPD A2404 HOH A2705 SITE 1 AC3 3 GLN A 343 ALA A 347 MPD A2405 SITE 1 AC4 8 LEU A 106 ARG A 254 HIS A 257 LEU A 271 SITE 2 AC4 8 ASP A 301 ZN A2402 HOH A2639 HOH A2705 SITE 1 AC5 7 PHE A 51 GLY A 94 LEU A 346 ALA A 347 SITE 2 AC5 7 THR A 350 MPD A2403 HOH A2552 SITE 1 AC6 11 HIS G 55 TRP G 131 KCX G 169 HIS G 201 SITE 2 AC6 11 HIS G 230 ARG G 254 ASP G 301 ZN G 402 SITE 3 AC6 11 ZN G 403 HOH G 669 HOH G 688 SITE 1 AC7 6 HIS G 55 HIS G 57 KCX G 169 ASP G 301 SITE 2 AC7 6 CAC G 401 ZN G 403 SITE 1 AC8 6 KCX G 169 HIS G 201 HIS G 230 CAC G 401 SITE 2 AC8 6 ZN G 402 HOH G 699 SITE 1 AC9 2 PHE G 51 GLN G 343 CRYST1 85.886 86.304 88.583 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011289 0.00000