HEADER OXIDOREDUCTASE 15-DEC-14 4XAP TITLE CRYSTAL STRUCTURE OF ALDO-KETO REDUCTASE FROM SINORHIZOBIUM MELILOTI TITLE 2 1021 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM MELILOTI (STRAIN 1021); SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI, SINORHIZOBIUM MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R02112, SMC01429; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, ALDO- KEYWDS 2 KETO REDUCTASE, NADP-BINDING, NYSGRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.GASIOROWSKA,K.B.HANDING,I.G.SHABALIN,J.BONANNO,S.C.ALMO,W.MINOR, AUTHOR 2 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 6 27-SEP-23 4XAP 1 REMARK REVDAT 5 13-APR-22 4XAP 1 AUTHOR JRNL REVDAT 4 04-DEC-19 4XAP 1 REMARK REVDAT 3 27-SEP-17 4XAP 1 REMARK REVDAT 2 14-OCT-15 4XAP 1 REMARK REVDAT 1 31-DEC-14 4XAP 0 JRNL AUTH O.A.GASIOROWSKA,K.B.HANDING,I.G.SHABALIN,J.BONANNO,S.C.ALMO, JRNL AUTH 2 W.MINOR,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM JRNL AUTH 3 (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF ALDO-KETO REDUCTASE FROM SINORHIZOBIUM JRNL TITL 2 MELILOTI 1021 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2119 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2159 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2069 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2934 ; 1.720 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4744 ; 0.855 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 5.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;36.377 ;23.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;14.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2479 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 1.507 ; 2.358 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1122 ; 1.503 ; 2.357 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1402 ; 2.195 ; 3.531 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1800 14.9120 13.5620 REMARK 3 T TENSOR REMARK 3 T11: 0.8383 T22: 0.5700 REMARK 3 T33: 0.3249 T12: -0.3727 REMARK 3 T13: 0.0996 T23: -0.3064 REMARK 3 L TENSOR REMARK 3 L11: 24.3256 L22: 37.5530 REMARK 3 L33: 4.2391 L12: 30.1720 REMARK 3 L13: 10.0993 L23: 12.5761 REMARK 3 S TENSOR REMARK 3 S11: -1.3504 S12: 1.4046 S13: -1.6033 REMARK 3 S21: -1.9509 S22: 1.9637 S23: -2.0498 REMARK 3 S31: -0.6996 S32: 0.6316 S33: -0.6133 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4050 -2.4420 9.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.1872 REMARK 3 T33: 0.1157 T12: 0.0084 REMARK 3 T13: -0.0076 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.7728 L22: 4.3106 REMARK 3 L33: 3.6493 L12: -1.9219 REMARK 3 L13: 1.6719 L23: -2.5883 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: -0.0091 S13: -0.1166 REMARK 3 S21: 0.0852 S22: -0.0224 S23: 0.0505 REMARK 3 S31: -0.0587 S32: 0.0950 S33: -0.0823 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2730 -2.8900 16.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.2139 REMARK 3 T33: 0.0941 T12: -0.0266 REMARK 3 T13: -0.0011 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.3066 L22: 1.0586 REMARK 3 L33: 2.0406 L12: -0.3632 REMARK 3 L13: -0.5472 L23: 0.6940 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.1191 S13: 0.0269 REMARK 3 S21: 0.0995 S22: -0.0918 S23: 0.0352 REMARK 3 S31: 0.0105 S32: 0.0076 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9490 -10.0520 16.6610 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.1923 REMARK 3 T33: 0.0702 T12: -0.0629 REMARK 3 T13: 0.0117 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.6612 L22: 2.5837 REMARK 3 L33: 4.1290 L12: -1.2819 REMARK 3 L13: -1.2548 L23: 0.9025 REMARK 3 S TENSOR REMARK 3 S11: 0.1458 S12: -0.4132 S13: 0.1108 REMARK 3 S21: 0.3132 S22: 0.0441 S23: -0.1756 REMARK 3 S31: 0.2090 S32: 0.2253 S33: -0.1898 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0780 -12.9360 4.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1751 REMARK 3 T33: 0.1028 T12: 0.0051 REMARK 3 T13: -0.0044 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.2999 L22: 3.9448 REMARK 3 L33: 2.0160 L12: 1.6009 REMARK 3 L13: -0.2725 L23: 1.7858 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0166 S13: -0.0309 REMARK 3 S21: 0.1394 S22: 0.0488 S23: 0.1981 REMARK 3 S31: 0.0814 S32: -0.0841 S33: -0.0682 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5660 -13.6410 4.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.1524 T22: 0.1844 REMARK 3 T33: 0.1515 T12: -0.0112 REMARK 3 T13: -0.0040 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8714 L22: 1.4648 REMARK 3 L33: 2.3929 L12: 0.0123 REMARK 3 L13: -0.3858 L23: 1.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0054 S13: -0.1974 REMARK 3 S21: -0.0280 S22: -0.0734 S23: 0.3015 REMARK 3 S31: -0.0042 S32: -0.0918 S33: 0.0680 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8530 -6.8720 -5.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.2074 REMARK 3 T33: 0.0772 T12: 0.0135 REMARK 3 T13: -0.0086 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.8228 L22: 1.0338 REMARK 3 L33: 0.1626 L12: 0.3217 REMARK 3 L13: -0.0679 L23: -0.2099 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0314 S13: -0.0131 REMARK 3 S21: -0.1446 S22: 0.0188 S23: 0.0481 REMARK 3 S31: 0.0460 S32: 0.0284 S33: -0.0123 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7250 2.5830 3.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.2010 REMARK 3 T33: 0.1210 T12: -0.0053 REMARK 3 T13: 0.0059 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.6695 L22: 1.0613 REMARK 3 L33: 1.1897 L12: 0.0437 REMARK 3 L13: 1.4045 L23: -0.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: -0.0131 S13: -0.0099 REMARK 3 S21: -0.0210 S22: -0.0557 S23: -0.1735 REMARK 3 S31: -0.0204 S32: 0.1058 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6620 5.9200 15.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.2121 REMARK 3 T33: 0.1346 T12: -0.0289 REMARK 3 T13: -0.0216 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.8294 L22: 7.9780 REMARK 3 L33: 10.0825 L12: 1.1034 REMARK 3 L13: -4.5522 L23: -6.3250 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.2694 S13: 0.0284 REMARK 3 S21: 0.2513 S22: -0.1207 S23: -0.2466 REMARK 3 S31: -0.0962 S32: 0.4511 S33: 0.1366 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5670 10.1390 -1.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2346 REMARK 3 T33: 0.2205 T12: -0.0589 REMARK 3 T13: 0.0609 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 1.1287 L22: 7.5225 REMARK 3 L33: 5.4425 L12: 0.6019 REMARK 3 L13: 1.7961 L23: 3.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: 0.1836 S13: 0.1268 REMARK 3 S21: -0.4229 S22: 0.0669 S23: -0.2375 REMARK 3 S31: -0.5058 S32: 0.4278 S33: 0.0109 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 272 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5860 -7.6160 -9.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.3470 REMARK 3 T33: 0.1866 T12: 0.0681 REMARK 3 T13: 0.0711 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 5.3646 L22: 3.2592 REMARK 3 L33: 6.4182 L12: 1.5229 REMARK 3 L13: -5.2177 L23: 0.4084 REMARK 3 S TENSOR REMARK 3 S11: -0.2564 S12: -0.3432 S13: -0.5167 REMARK 3 S21: -0.2153 S22: -0.1206 S23: -0.4244 REMARK 3 S31: 0.2628 S32: 0.3840 S33: 0.3770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4XAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: 4PMJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 15 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5 MM TCEP WERE MIXED WITH 0.2 UL OF THE PEG/ION HT CONDITION # REMARK 280 70 (0.2M AMMONIUM CITRATE TRIBASIC ANHYDROUS, 20% W/V PEG 3350 REMARK 280 PH=7) AND EQUILIBRATED AGAINST 1.5 M NACL SOLUTION IN 96 WELL 3 REMARK 280 DROP CRYSTALLIZATION PLATE (SWISSCI). BEFORE CRYSTALLIZATION REMARK 280 PROTEIN WAS INCUBATED WITH 1/50 V/V OF 1 MG/ML TEV SOLUTION AT REMARK 280 289 K FOR 1 HOUR, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.26650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.53650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.53650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.26650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.03400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CE NZ REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 32 CE NZ REMARK 470 ARG A 38 CD NE CZ NH1 NH2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 260 CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 320 O HOH A 323 2.01 REMARK 500 O HOH A 388 O HOH A 398 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 152.71 -42.19 REMARK 500 TYR A 57 94.55 -69.27 REMARK 500 ARG A 73 31.77 -155.93 REMARK 500 ASP A 159 -1.44 68.83 REMARK 500 ASP A 180 -57.31 -141.46 REMARK 500 THR A 240 -105.67 -88.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-012048 RELATED DB: TARGETTRACK DBREF 4XAP A 1 281 UNP Q92NR7 Q92NR7_RHIME 1 281 SEQADV 4XAP SER A 0 UNP Q92NR7 EXPRESSION TAG SEQRES 1 A 282 SER MET HIS ASP PRO ILE PRO THR ILE ALA PHE PRO ASP SEQRES 2 A 282 GLY ARG LYS VAL PRO ALA LEU GLY GLN GLY THR TRP ARG SEQRES 3 A 282 MET GLY GLU ASN ARG ALA LYS THR ALA ASP GLU VAL ARG SEQRES 4 A 282 SER LEU GLN THR GLY LEU ASP LEU GLY MET THR LEU ILE SEQRES 5 A 282 ASP THR ALA GLU MET TYR GLY ASP GLY ALA ALA GLU ARG SEQRES 6 A 282 ILE VAL GLY GLU ALA ILE LYS GLY ARG ARG ASP GLU ALA SEQRES 7 A 282 PHE VAL VAL SER LYS VAL LEU PRO SER ASN ALA SER ARG SEQRES 8 A 282 ALA GLY THR VAL ALA ALA CYS GLU ARG SER LEU ARG ASN SEQRES 9 A 282 LEU GLY ILE ASP CYS VAL ASP LEU TYR LEU LEU HIS TRP SEQRES 10 A 282 ARG GLY GLY TYR PRO LEU ALA GLU THR VAL ALA ALA PHE SEQRES 11 A 282 GLU GLU LEU LYS LYS ALA GLY LYS ILE ARG ALA TRP GLY SEQRES 12 A 282 VAL SER ASN PHE ASP VAL ASP ASP MET GLU GLU LEU SER SEQRES 13 A 282 ALA VAL PRO ASP GLY GLY ASN VAL ALA ALA ASN GLN VAL SEQRES 14 A 282 LEU TYR ASN LEU ALA ARG ARG GLY ILE GLU PHE ASP LEU SEQRES 15 A 282 LEU PRO ARG CYS ARG ALA GLN GLY VAL PRO VAL MET ALA SEQRES 16 A 282 TYR SER PRO LEU ASP GLU GLY ARG LEU LEU HIS ASP ALA SEQRES 17 A 282 ASP LEU ILE HIS ILE ALA LYS ALA HIS GLN ALA THR PRO SEQRES 18 A 282 ALA GLN VAL ALA LEU ALA PHE LEU LYS THR CYS SER GLY SEQRES 19 A 282 VAL ILE SER ILE PRO LYS THR GLY SER PRO GLU ARG ALA SEQRES 20 A 282 ARG GLU ASN ARG ASP ALA MET ASP ILE HIS LEU THR THR SEQRES 21 A 282 GLU ASN LEU ALA GLU LEU ASP ARG HIS PHE PRO PRO PRO SEQRES 22 A 282 ARG ARG LYS THR ARG LEU GLU VAL ILE FORMUL 2 HOH *103(H2 O) HELIX 1 AA1 ASN A 29 ALA A 31 5 3 HELIX 2 AA2 LYS A 32 LEU A 46 1 15 HELIX 3 AA3 GLY A 60 ILE A 70 1 11 HELIX 4 AA4 ARG A 73 ALA A 77 5 5 HELIX 5 AA5 LEU A 84 ALA A 88 5 5 HELIX 6 AA6 SER A 89 GLY A 105 1 17 HELIX 7 AA7 PRO A 121 ALA A 135 1 15 HELIX 8 AA8 ASP A 147 VAL A 157 1 11 HELIX 9 AA9 ASP A 159 VAL A 163 5 5 HELIX 10 AB1 ARG A 175 PHE A 179 5 5 HELIX 11 AB2 ASP A 180 GLN A 188 1 9 HELIX 12 AB3 LEU A 198 HIS A 205 5 8 HELIX 13 AB4 ASP A 206 HIS A 216 1 11 HELIX 14 AB5 THR A 219 THR A 230 1 12 HELIX 15 AB6 SER A 242 ALA A 252 1 11 HELIX 16 AB7 MET A 253 ILE A 255 5 3 HELIX 17 AB8 THR A 258 PHE A 269 1 12 SHEET 1 AA1 2 THR A 7 ALA A 9 0 SHEET 2 AA1 2 LYS A 15 PRO A 17 -1 O VAL A 16 N ILE A 8 SHEET 1 AA2 8 GLN A 21 GLY A 22 0 SHEET 2 AA2 8 LEU A 50 ASP A 52 1 O ASP A 52 N GLN A 21 SHEET 3 AA2 8 PHE A 78 VAL A 83 1 O VAL A 80 N ILE A 51 SHEET 4 AA2 8 LEU A 111 LEU A 114 1 O LEU A 113 N VAL A 83 SHEET 5 AA2 8 TRP A 141 SER A 144 1 O GLY A 142 N TYR A 112 SHEET 6 AA2 8 ASN A 166 LEU A 169 1 O GLN A 167 N VAL A 143 SHEET 7 AA2 8 VAL A 192 TYR A 195 1 O TYR A 195 N VAL A 168 SHEET 8 AA2 8 VAL A 234 SER A 236 1 O ILE A 235 N VAL A 192 CRYST1 44.533 78.068 79.073 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012647 0.00000