HEADER HYDROLASE 16-DEC-14 4XAY TITLE CYCLES OF DESTABILIZATION AND REPAIR UNDERLIE EVOLUTIONARY TRANSITIONS TITLE 2 IN ENZYMES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE VARIANT PTE-R8; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYNAMICS, EVOLUTION, PHOSPHOTRIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,E.CAMPBELL,M.KALTENBACH,N.TOKURIKI REVDAT 6 15-NOV-23 4XAY 1 REMARK REVDAT 5 27-SEP-23 4XAY 1 REMARK LINK REVDAT 4 26-OCT-16 4XAY 1 JRNL REVDAT 3 28-SEP-16 4XAY 1 JRNL REVDAT 2 07-SEP-16 4XAY 1 JRNL REVDAT 1 16-DEC-15 4XAY 0 JRNL AUTH E.CAMPBELL,M.KALTENBACH,G.J.CORREY,P.D.CARR,B.T.POREBSKI, JRNL AUTH 2 E.K.LIVINGSTONE,L.AFRIAT-JURNOU,A.M.BUCKLE,M.WEIK, JRNL AUTH 3 F.HOLLFELDER,N.TOKURIKI,C.J.JACKSON JRNL TITL THE ROLE OF PROTEIN DYNAMICS IN THE EVOLUTION OF NEW ENZYME JRNL TITL 2 FUNCTION. JRNL REF NAT.CHEM.BIOL. V. 12 944 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27618189 JRNL DOI 10.1038/NCHEMBIO.2175 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4199 - 5.0728 1.00 2843 91 0.1706 0.1636 REMARK 3 2 5.0728 - 4.0278 1.00 2675 145 0.1376 0.1659 REMARK 3 3 4.0278 - 3.5191 1.00 2667 117 0.1441 0.1807 REMARK 3 4 3.5191 - 3.1975 1.00 2615 140 0.1622 0.1854 REMARK 3 5 3.1975 - 2.9684 1.00 2630 137 0.1721 0.2189 REMARK 3 6 2.9684 - 2.7934 1.00 2615 129 0.1701 0.2279 REMARK 3 7 2.7934 - 2.6536 1.00 2615 138 0.1670 0.2274 REMARK 3 8 2.6536 - 2.5381 1.00 2534 167 0.1731 0.2340 REMARK 3 9 2.5381 - 2.4404 1.00 2591 150 0.1764 0.2079 REMARK 3 10 2.4404 - 2.3562 1.00 2611 126 0.1807 0.2095 REMARK 3 11 2.3562 - 2.2825 1.00 2557 142 0.1894 0.2257 REMARK 3 12 2.2825 - 2.2173 1.00 2581 137 0.1850 0.2573 REMARK 3 13 2.2173 - 2.1589 1.00 2570 119 0.1910 0.2810 REMARK 3 14 2.1589 - 2.1063 1.00 2632 103 0.1951 0.2553 REMARK 3 15 2.1063 - 2.0584 1.00 2540 135 0.2059 0.2739 REMARK 3 16 2.0584 - 2.0146 1.00 2536 197 0.2126 0.2448 REMARK 3 17 2.0146 - 1.9743 1.00 2558 151 0.2268 0.3009 REMARK 3 18 1.9743 - 1.9370 1.00 2548 161 0.2359 0.3235 REMARK 3 19 1.9370 - 1.9024 1.00 2527 143 0.2411 0.3012 REMARK 3 20 1.9024 - 1.8702 1.00 2591 122 0.2524 0.2794 REMARK 3 21 1.8702 - 1.8400 1.00 2541 139 0.2714 0.3553 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5305 REMARK 3 ANGLE : 1.114 7236 REMARK 3 CHIRALITY : 0.040 847 REMARK 3 PLANARITY : 0.005 946 REMARK 3 DIHEDRAL : 13.452 1948 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57480 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 38.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.10690 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA CACODYLATE, 30% METHANE-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.88150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.96150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.88150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.96150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 MET G 33 REMARK 465 ARG G 363 REMARK 465 ALA G 364 REMARK 465 SER G 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2670 O HOH A 2682 1.97 REMARK 500 O HOH G 537 O HOH G 638 2.05 REMARK 500 OG1 THR G 202 O HOH G 655 2.07 REMARK 500 O HOH A 2678 O HOH G 545 2.11 REMARK 500 OD2 ASP G 253 O HOH G 646 2.13 REMARK 500 O HOH G 617 O HOH G 677 2.15 REMARK 500 O HOH A 2660 O HOH A 2668 2.17 REMARK 500 O HOH A 2504 O HOH A 2509 2.19 REMARK 500 O ARG G 207 O HOH G 653 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2506 O HOH A 2531 3445 2.11 REMARK 500 O HOH A 2528 O HOH A 2533 3445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU G 303 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -146.65 -144.48 REMARK 500 TRP A 69 58.67 -144.02 REMARK 500 ARG A 108 126.79 -37.62 REMARK 500 TRP A 131 -144.86 -95.26 REMARK 500 GLU A 159 -131.67 52.32 REMARK 500 VAL A 176 113.50 89.16 REMARK 500 ALA A 259 -156.03 57.06 REMARK 500 ILE A 260 136.97 172.84 REMARK 500 LEU A 271 -15.61 -149.31 REMARK 500 LEU A 272 -105.86 -117.73 REMARK 500 SER A 308 46.83 -88.88 REMARK 500 SER A 308 32.41 -84.60 REMARK 500 SER G 61 -150.02 -149.13 REMARK 500 VAL G 101 31.11 -95.12 REMARK 500 THR G 128 -166.82 -115.52 REMARK 500 TRP G 131 -145.57 -103.45 REMARK 500 GLU G 159 -131.17 51.35 REMARK 500 THR G 173 -70.30 -108.37 REMARK 500 VAL G 351 -58.51 -120.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 118.0 REMARK 620 3 KCX A 169 OQ2 93.2 87.5 REMARK 620 4 ASP A 301 OD1 86.6 90.4 177.4 REMARK 620 5 HOH A2682 O 113.1 128.8 93.2 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 100.3 REMARK 620 3 HIS A 230 NE2 117.8 93.4 REMARK 620 4 HOH A2682 O 108.1 131.6 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 55 NE2 REMARK 620 2 HIS G 57 NE2 117.0 REMARK 620 3 KCX G 169 OQ2 95.6 84.8 REMARK 620 4 ASP G 301 OD1 87.5 90.4 175.1 REMARK 620 5 CAC G 401 O2 108.1 134.8 94.2 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX G 169 OQ1 REMARK 620 2 HIS G 201 ND1 102.3 REMARK 620 3 HIS G 230 NE2 117.2 97.7 REMARK 620 4 CAC G 401 O1 106.3 77.1 136.2 REMARK 620 5 CAC G 401 O2 103.0 143.5 93.7 70.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC G 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBE RELATED DB: PDB REMARK 900 RELATED ID: 4PBF RELATED DB: PDB REMARK 900 RELATED ID: 4PCN RELATED DB: PDB REMARK 900 RELATED ID: 4PCP RELATED DB: PDB REMARK 900 RELATED ID: 4XAF RELATED DB: PDB REMARK 900 RELATED ID: 4XAG RELATED DB: PDB REMARK 900 RELATED ID: 4XAZ RELATED DB: PDB REMARK 900 RELATED ID: 4XD3 RELATED DB: PDB REMARK 900 RELATED ID: 4XD4 RELATED DB: PDB REMARK 900 RELATED ID: 4XD5 RELATED DB: PDB REMARK 900 RELATED ID: 4XD6 RELATED DB: PDB DBREF1 4XAY A 33 365 UNP A0A060GTM7_BREDI DBREF2 4XAY A A0A060GTM7 1 333 DBREF1 4XAY G 33 365 UNP A0A060GTM7_BREDI DBREF2 4XAY G A0A060GTM7 1 333 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER ILE ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 A 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA LEU LEU GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 ILE SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 G 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 G 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 G 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 G 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 G 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 G 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 G 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 G 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 G 333 SER ILE ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 G 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 G 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 G 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 G 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 G 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 G 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 G 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 G 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 G 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 G 333 SER ALA THR ALA LEU LEU GLY SER ARG SER TRP GLN THR SEQRES 20 G 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 G 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 G 333 ILE SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 G 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 G 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 G 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 G 333 LEU SER PRO THR LEU ARG ALA SER MODRES 4XAY KCX A 169 LYS MODIFIED RESIDUE MODRES 4XAY KCX G 169 LYS MODIFIED RESIDUE HET KCX A 169 12 HET KCX G 169 12 HET ZN A2401 1 HET ZN A2402 1 HET MPD A2403 8 HET CAC G 401 5 HET ZN G 402 1 HET ZN G 403 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MPD C6 H14 O2 FORMUL 6 CAC C2 H6 AS O2 1- FORMUL 9 HOH *371(H2 O) HELIX 1 AA1 SER A 47 ALA A 49 5 3 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 GLY A 208 GLU A 219 1 12 HELIX 11 AB2 SER A 222 SER A 224 5 3 HELIX 12 AB3 HIS A 230 THR A 234 5 5 HELIX 13 AB4 ASP A 236 ARG A 246 1 11 HELIX 14 AB5 ARG A 254 ALA A 259 5 6 HELIX 15 AB6 ASN A 265 THR A 269 5 5 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 PRO A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 HELIX 24 AC6 SER G 47 ALA G 49 5 3 HELIX 25 AC7 GLY G 64 TRP G 69 1 6 HELIX 26 AC8 PRO G 70 GLY G 74 5 5 HELIX 27 AC9 SER G 75 ALA G 93 1 19 HELIX 28 AD1 THR G 103 GLY G 107 5 5 HELIX 29 AD2 ASP G 109 ASP G 121 1 13 HELIX 30 AD3 PRO G 135 LEU G 140 1 6 HELIX 31 AD4 SER G 142 TYR G 156 1 15 HELIX 32 AD5 THR G 177 GLY G 195 1 19 HELIX 33 AD6 GLY G 208 GLU G 219 1 12 HELIX 34 AD7 SER G 222 SER G 224 5 3 HELIX 35 AD8 HIS G 230 THR G 234 5 5 HELIX 36 AD9 ASP G 236 ARG G 246 1 11 HELIX 37 AE1 ASN G 265 GLY G 273 1 9 HELIX 38 AE2 SER G 276 GLN G 290 1 15 HELIX 39 AE3 TYR G 292 LYS G 294 5 3 HELIX 40 AE4 ASN G 312 ASN G 321 1 10 HELIX 41 AE5 ASP G 323 MET G 325 5 3 HELIX 42 AE6 ALA G 326 ARG G 331 1 6 HELIX 43 AE7 ARG G 331 LYS G 339 1 9 HELIX 44 AE8 PRO G 342 VAL G 351 1 10 HELIX 45 AE9 VAL G 351 SER G 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 ILE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 LEU A 130 0 SHEET 2 AA4 6 ILE A 167 THR A 173 1 O KCX A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 ALA A 203 1 O ILE A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 GLY A 229 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ARG G 36 THR G 39 0 SHEET 2 AA5 2 GLY G 42 THR G 45 -1 O ILE G 44 N ILE G 37 SHEET 1 AA6 3 THR G 52 GLU G 56 0 SHEET 2 AA6 3 THR G 97 ASP G 100 1 O THR G 97 N LEU G 53 SHEET 3 AA6 3 HIS G 123 VAL G 125 1 O HIS G 123 N ILE G 98 SHEET 1 AA7 2 CYS G 59 GLY G 60 0 SHEET 2 AA7 2 GLY G 305 ILE G 306 1 O GLY G 305 N GLY G 60 SHEET 1 AA8 6 ALA G 127 GLY G 129 0 SHEET 2 AA8 6 ILE G 167 ALA G 171 1 O KCX G 169 N THR G 128 SHEET 3 AA8 6 VAL G 198 HIS G 201 1 O ILE G 199 N ILE G 168 SHEET 4 AA8 6 VAL G 226 ILE G 228 1 O CYS G 227 N VAL G 198 SHEET 5 AA8 6 LEU G 249 LEU G 252 1 O LEU G 249 N ILE G 228 SHEET 6 AA8 6 ILE G 296 VAL G 298 1 O LEU G 297 N LEU G 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.33 LINK C KCX A 169 N VAL A 170 1555 1555 1.33 LINK C ILE G 168 N KCX G 169 1555 1555 1.33 LINK C KCX G 169 N VAL G 170 1555 1555 1.34 LINK NE2 HIS A 55 ZN ZN A2401 1555 1555 2.12 LINK NE2 HIS A 57 ZN ZN A2401 1555 1555 2.10 LINK OQ2 KCX A 169 ZN ZN A2401 1555 1555 2.13 LINK OQ1 KCX A 169 ZN ZN A2402 1555 1555 1.99 LINK ND1 HIS A 201 ZN ZN A2402 1555 1555 2.01 LINK NE2 HIS A 230 ZN ZN A2402 1555 1555 2.09 LINK OD1 ASP A 301 ZN ZN A2401 1555 1555 2.28 LINK ZN ZN A2401 O HOH A2682 1555 1555 2.11 LINK ZN ZN A2402 O HOH A2682 1555 1555 2.13 LINK NE2 HIS G 55 ZN ZN G 402 1555 1555 2.16 LINK NE2 HIS G 57 ZN ZN G 402 1555 1555 2.07 LINK OQ2 KCX G 169 ZN ZN G 402 1555 1555 2.15 LINK OQ1 KCX G 169 ZN ZN G 403 1555 1555 1.93 LINK ND1 HIS G 201 ZN ZN G 403 1555 1555 1.95 LINK NE2 HIS G 230 ZN ZN G 403 1555 1555 2.10 LINK OD1 ASP G 301 ZN ZN G 402 1555 1555 2.34 LINK O2 CAC G 401 ZN ZN G 402 1555 1555 2.06 LINK O1 CAC G 401 ZN ZN G 403 1555 1555 2.66 LINK O2 CAC G 401 ZN ZN G 403 1555 1555 2.15 SITE 1 AC1 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 6 ZN A2402 HOH A2682 SITE 1 AC2 6 HIS A 55 KCX A 169 HIS A 201 HIS A 230 SITE 2 AC2 6 ZN A2401 HOH A2682 SITE 1 AC3 2 PHE A 51 GLN A 343 SITE 1 AC4 10 HIS G 55 HIS G 57 TRP G 131 KCX G 169 SITE 2 AC4 10 HIS G 201 HIS G 230 ARG G 254 ASP G 301 SITE 3 AC4 10 ZN G 402 ZN G 403 SITE 1 AC5 6 HIS G 55 HIS G 57 KCX G 169 ASP G 301 SITE 2 AC5 6 CAC G 401 ZN G 403 SITE 1 AC6 5 KCX G 169 HIS G 201 HIS G 230 CAC G 401 SITE 2 AC6 5 ZN G 402 CRYST1 85.763 85.923 88.680 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011276 0.00000