HEADER CHAPERONE 17-DEC-14 4XBI TITLE STRUCTURE OF A MALARIAL PROTEIN INVOLVED IN PROTEOSTASIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLPB PROTEIN, PUTATIVE,GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7), AEQUOREA SOURCE 3 VICTORIA; SOURCE 4 ORGANISM_COMMON: JELLYFISH; SOURCE 5 ORGANISM_TAXID: 36329, 6100; SOURCE 6 STRAIN: ISOLATE 3D7; SOURCE 7 GENE: PF08_0063, GFP; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PRSF KEYWDS CLP CHAPERONE, AAA+ ATPASE, REFOLDASE, PROTEIN METABOLISM, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA,A.P.AH YOUNG,D.CASCIO REVDAT 4 15-NOV-23 4XBI 1 REMARK REVDAT 3 27-SEP-23 4XBI 1 JRNL REMARK REVDAT 2 02-SEP-15 4XBI 1 JRNL REVDAT 1 29-JUL-15 4XBI 0 JRNL AUTH A.P.AHYOUNG,A.KOEHL,D.CASCIO,P.F.EGEA JRNL TITL STRUCTURAL MAPPING OF THE CLPB ATPASES OF PLASMODIUM JRNL TITL 2 FALCIPARUM: TARGETING PROTEIN FOLDING AND SECRETION FOR JRNL TITL 3 ANTIMALARIAL DRUG DESIGN. JRNL REF PROTEIN SCI. V. 24 1508 2015 JRNL REFN ESSN 1469-896X JRNL PMID 26130467 JRNL DOI 10.1002/PRO.2739 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 55908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.9896 - 5.4637 0.97 2667 141 0.1652 0.1714 REMARK 3 2 5.4637 - 4.3369 0.98 2664 138 0.1391 0.1718 REMARK 3 3 4.3369 - 3.7887 0.98 2673 136 0.1410 0.1743 REMARK 3 4 3.7887 - 3.4423 0.99 2665 141 0.1563 0.1777 REMARK 3 5 3.4423 - 3.1956 0.99 2674 140 0.1725 0.2074 REMARK 3 6 3.1956 - 3.0072 0.99 2678 144 0.1773 0.2392 REMARK 3 7 3.0072 - 2.8566 0.99 2668 140 0.1987 0.2519 REMARK 3 8 2.8566 - 2.7322 0.99 2673 142 0.1943 0.2190 REMARK 3 9 2.7322 - 2.6270 1.00 2680 140 0.1847 0.2175 REMARK 3 10 2.6270 - 2.5364 1.00 2667 143 0.1808 0.2142 REMARK 3 11 2.5364 - 2.4571 1.00 2688 140 0.1791 0.2289 REMARK 3 12 2.4571 - 2.3868 1.00 2661 143 0.1761 0.2161 REMARK 3 13 2.3868 - 2.3240 1.00 2680 140 0.1699 0.2179 REMARK 3 14 2.3240 - 2.2673 1.00 2698 141 0.1723 0.2242 REMARK 3 15 2.2673 - 2.2157 1.00 2679 129 0.1774 0.2455 REMARK 3 16 2.2157 - 2.1686 1.00 2690 143 0.1762 0.2184 REMARK 3 17 2.1686 - 2.1252 1.00 2650 153 0.1846 0.2297 REMARK 3 18 2.1252 - 2.0851 1.00 2650 175 0.1876 0.2364 REMARK 3 19 2.0851 - 2.0479 1.00 2665 134 0.1942 0.2304 REMARK 3 20 2.0479 - 2.0131 0.86 2334 101 0.2289 0.2768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5988 REMARK 3 ANGLE : 1.035 8103 REMARK 3 CHIRALITY : 0.043 908 REMARK 3 PLANARITY : 0.004 1039 REMARK 3 DIHEDRAL : 13.225 2190 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 7:148 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1175 44.7309 65.0787 REMARK 3 T TENSOR REMARK 3 T11: 0.6887 T22: 0.5722 REMARK 3 T33: 0.4939 T12: 0.0561 REMARK 3 T13: 0.0871 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.9742 L22: 1.7280 REMARK 3 L33: 3.9492 L12: -0.2561 REMARK 3 L13: -2.2690 L23: 0.8664 REMARK 3 S TENSOR REMARK 3 S11: 0.2134 S12: 0.0455 S13: -0.1475 REMARK 3 S21: -0.4929 S22: -0.1958 S23: -0.0477 REMARK 3 S31: -0.1583 S32: 0.1001 S33: -0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 149:382 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9375 27.9109 30.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.2263 REMARK 3 T33: 0.1966 T12: 0.0017 REMARK 3 T13: -0.0098 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.8032 L22: 1.4200 REMARK 3 L33: 1.1557 L12: -0.2695 REMARK 3 L13: 0.0719 L23: 0.1154 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.1273 S13: 0.0737 REMARK 3 S21: 0.1259 S22: -0.0436 S23: 0.0339 REMARK 3 S31: -0.1035 S32: -0.1261 S33: 0.0038 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESSEQ 5:149 REMARK 3 ORIGIN FOR THE GROUP (A): 67.2401 27.0632 6.0582 REMARK 3 T TENSOR REMARK 3 T11: 0.3424 T22: 0.5873 REMARK 3 T33: 0.7023 T12: 0.0031 REMARK 3 T13: 0.1063 T23: -0.1260 REMARK 3 L TENSOR REMARK 3 L11: 2.3174 L22: 2.1457 REMARK 3 L33: 1.9028 L12: -0.7186 REMARK 3 L13: -0.2027 L23: 0.3677 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.5530 S13: 0.7729 REMARK 3 S21: -0.0259 S22: 0.0413 S23: -0.1463 REMARK 3 S31: -0.0619 S32: -0.1495 S33: -0.1216 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 150:379 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4874 46.1363 11.2314 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.2706 REMARK 3 T33: 0.2968 T12: -0.0199 REMARK 3 T13: -0.0154 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.2832 L22: 1.9013 REMARK 3 L33: 2.0313 L12: -0.0204 REMARK 3 L13: -0.1359 L23: 0.2871 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.2933 S13: 0.3670 REMARK 3 S21: -0.0931 S22: 0.0653 S23: -0.1263 REMARK 3 S31: -0.1522 S32: 0.2660 S33: -0.0515 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 70.946 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P, 4IOD AND 4IRF REMARK 200 REMARK 200 REMARK: BRIGHT YELLOW HEXAGONAL SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE 100 MM HEPES REMARK 280 PH=7 PROTEIN AT 13-15 MG/ML, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.71333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.85667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.28500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.42833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.14167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 GLY B 79 REMARK 465 PHE B 80 REMARK 465 GLY B 81 REMARK 465 LEU B 380 REMARK 465 VAL B 381 REMARK 465 PRO B 382 REMARK 465 ARG B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 THR A 8 OG1 CG2 REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 GLN A 64 CG CD OE1 NE2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASN A 105 CG OD1 ND2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 TYR A 108 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 109 CG1 CG2 CD1 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ARG A 383 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 TYR B 108 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 134 CG OD1 ND2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 470 LYS B 307 CG CD CE NZ REMARK 470 ASP B 339 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 281 O HOH A 617 1.85 REMARK 500 O HOH A 723 O HOH A 727 1.86 REMARK 500 O HOH B 523 O HOH B 635 1.88 REMARK 500 O HOH A 523 O HOH A 584 1.89 REMARK 500 O1 SO4 A 402 O HOH A 720 1.91 REMARK 500 O HOH A 512 O HOH A 583 1.96 REMARK 500 O HOH B 614 O HOH B 623 1.99 REMARK 500 NE ARG B 229 O HOH B 642 2.00 REMARK 500 NZ LYS A 363 O HOH A 501 2.14 REMARK 500 O HOH A 696 O HOH A 699 2.14 REMARK 500 O HOH B 639 O HOH B 640 2.15 REMARK 500 O HOH B 637 O HOH B 638 2.15 REMARK 500 O HOH A 655 O HOH A 704 2.16 REMARK 500 NZ LYS B 315 OD2 ASP B 329 2.17 REMARK 500 O HOH A 631 O HOH A 643 2.17 REMARK 500 O HOH A 698 O HOH A 700 2.18 REMARK 500 O HOH A 721 O HOH A 727 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 505 O HOH A 571 5555 1.96 REMARK 500 O HOH A 568 O HOH B 529 5555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 33.86 -99.76 REMARK 500 SER A 43 -68.24 105.26 REMARK 500 ASP A 252 -154.27 -152.62 REMARK 500 ASP B 45 75.78 51.03 REMARK 500 PHE B 125 -65.14 -133.50 REMARK 500 ASP B 252 -152.72 -156.60 REMARK 500 HIS B 348 -168.95 -162.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B3P RELATED DB: PDB REMARK 900 2B3P IS THE SUPERFOLDER GFP PROTEIN FUSED TO THIS TARGET FOR REMARK 900 CRYSTALLIZATION DBREF 4XBI A 3 149 UNP Q8IB03 Q8IB03_PLAF7 152 298 DBREF 4XBI A 151 379 UNP P42212 GFP_AEQVI 2 230 DBREF 4XBI B 3 149 UNP Q8IB03 Q8IB03_PLAF7 152 298 DBREF 4XBI B 151 379 UNP P42212 GFP_AEQVI 2 230 SEQADV 4XBI MET A 1 UNP Q8IB03 INITIATING METHIONINE SEQADV 4XBI GLY A 2 UNP Q8IB03 EXPRESSION TAG SEQADV 4XBI GLY A 150 UNP Q8IB03 LINKER SEQADV 4XBI ARG A 179 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 4XBI ASN A 188 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 4XBI LEU A 213 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 4XBI A UNP P42212 SER 65 DELETION SEQADV 4XBI A UNP P42212 TYR 66 DELETION SEQADV 4XBI CRO A 215 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4XBI ARG A 229 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 4XBI SER A 248 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 4XBI THR A 254 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 4XBI PHE A 294 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 4XBI THR A 302 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 4XBI ALA A 312 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 4XBI VAL A 320 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 4XBI VAL A 355 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 4XBI LEU A 380 UNP P42212 EXPRESSION TAG SEQADV 4XBI VAL A 381 UNP P42212 EXPRESSION TAG SEQADV 4XBI PRO A 382 UNP P42212 EXPRESSION TAG SEQADV 4XBI ARG A 383 UNP P42212 EXPRESSION TAG SEQADV 4XBI MET B 1 UNP Q8IB03 INITIATING METHIONINE SEQADV 4XBI GLY B 2 UNP Q8IB03 EXPRESSION TAG SEQADV 4XBI GLY B 150 UNP Q8IB03 LINKER SEQADV 4XBI ARG B 179 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 4XBI ASN B 188 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 4XBI LEU B 213 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 4XBI B UNP P42212 SER 65 DELETION SEQADV 4XBI B UNP P42212 TYR 66 DELETION SEQADV 4XBI CRO B 215 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4XBI ARG B 229 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 4XBI SER B 248 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 4XBI THR B 254 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 4XBI PHE B 294 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 4XBI THR B 302 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 4XBI ALA B 312 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 4XBI VAL B 320 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 4XBI VAL B 355 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 4XBI LEU B 380 UNP P42212 EXPRESSION TAG SEQADV 4XBI VAL B 381 UNP P42212 EXPRESSION TAG SEQADV 4XBI PRO B 382 UNP P42212 EXPRESSION TAG SEQADV 4XBI ARG B 383 UNP P42212 EXPRESSION TAG SEQRES 1 A 381 MET GLY ASN SER ASP ASP TYR THR GLU LYS ALA TRP GLU SEQRES 2 A 381 ALA ILE SER SER LEU ASN LYS ILE GLY GLU LYS TYR ASP SEQRES 3 A 381 SER ALA TYR VAL GLU ALA GLU MET LEU LEU LEU ALA LEU SEQRES 4 A 381 LEU ASN ASP SER PRO ASP GLY LEU ALA GLU ARG ILE LEU SEQRES 5 A 381 LYS GLU SER GLY ILE ASP THR GLN LEU LEU VAL GLN GLU SEQRES 6 A 381 ILE ASP ASP TYR LEU LYS LYS GLN PRO LYS MET PRO SER SEQRES 7 A 381 GLY PHE GLY GLU GLN LYS ILE LEU GLY ARG THR LEU GLN SEQRES 8 A 381 THR VAL LEU SER THR SER LYS ARG LEU LYS LYS GLU PHE SEQRES 9 A 381 ASN ASP GLU TYR ILE SER ILE GLU HIS LEU LEU LEU SER SEQRES 10 A 381 ILE ILE SER GLU ASP SER LYS PHE THR ARG PRO TRP LEU SEQRES 11 A 381 LEU LYS TYR ASN VAL ASN TYR GLU LYS VAL LYS LYS ALA SEQRES 12 A 381 VAL GLU LYS ILE ARG GLY GLY SER LYS GLY GLU GLU LEU SEQRES 13 A 381 PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY SEQRES 14 A 381 ASP VAL ASN GLY HIS LYS PHE SER VAL ARG GLY GLU GLY SEQRES 15 A 381 GLU GLY ASP ALA THR ASN GLY LYS LEU THR LEU LYS PHE SEQRES 16 A 381 ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR SEQRES 17 A 381 LEU VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR SEQRES 18 A 381 PRO ASP HIS MET LYS ARG HIS ASP PHE PHE LYS SER ALA SEQRES 19 A 381 MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE SER PHE SEQRES 20 A 381 LYS ASP ASP GLY THR TYR LYS THR ARG ALA GLU VAL LYS SEQRES 21 A 381 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS SEQRES 22 A 381 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS SEQRES 23 A 381 LYS LEU GLU TYR ASN PHE ASN SER HIS ASN VAL TYR ILE SEQRES 24 A 381 THR ALA ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE SEQRES 25 A 381 LYS ILE ARG HIS ASN VAL GLU ASP GLY SER VAL GLN LEU SEQRES 26 A 381 ALA ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY SEQRES 27 A 381 PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN SEQRES 28 A 381 SER VAL LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS SEQRES 29 A 381 MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR SEQRES 30 A 381 LEU VAL PRO ARG SEQRES 1 B 381 MET GLY ASN SER ASP ASP TYR THR GLU LYS ALA TRP GLU SEQRES 2 B 381 ALA ILE SER SER LEU ASN LYS ILE GLY GLU LYS TYR ASP SEQRES 3 B 381 SER ALA TYR VAL GLU ALA GLU MET LEU LEU LEU ALA LEU SEQRES 4 B 381 LEU ASN ASP SER PRO ASP GLY LEU ALA GLU ARG ILE LEU SEQRES 5 B 381 LYS GLU SER GLY ILE ASP THR GLN LEU LEU VAL GLN GLU SEQRES 6 B 381 ILE ASP ASP TYR LEU LYS LYS GLN PRO LYS MET PRO SER SEQRES 7 B 381 GLY PHE GLY GLU GLN LYS ILE LEU GLY ARG THR LEU GLN SEQRES 8 B 381 THR VAL LEU SER THR SER LYS ARG LEU LYS LYS GLU PHE SEQRES 9 B 381 ASN ASP GLU TYR ILE SER ILE GLU HIS LEU LEU LEU SER SEQRES 10 B 381 ILE ILE SER GLU ASP SER LYS PHE THR ARG PRO TRP LEU SEQRES 11 B 381 LEU LYS TYR ASN VAL ASN TYR GLU LYS VAL LYS LYS ALA SEQRES 12 B 381 VAL GLU LYS ILE ARG GLY GLY SER LYS GLY GLU GLU LEU SEQRES 13 B 381 PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY SEQRES 14 B 381 ASP VAL ASN GLY HIS LYS PHE SER VAL ARG GLY GLU GLY SEQRES 15 B 381 GLU GLY ASP ALA THR ASN GLY LYS LEU THR LEU LYS PHE SEQRES 16 B 381 ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR SEQRES 17 B 381 LEU VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR SEQRES 18 B 381 PRO ASP HIS MET LYS ARG HIS ASP PHE PHE LYS SER ALA SEQRES 19 B 381 MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE SER PHE SEQRES 20 B 381 LYS ASP ASP GLY THR TYR LYS THR ARG ALA GLU VAL LYS SEQRES 21 B 381 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS SEQRES 22 B 381 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS SEQRES 23 B 381 LYS LEU GLU TYR ASN PHE ASN SER HIS ASN VAL TYR ILE SEQRES 24 B 381 THR ALA ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE SEQRES 25 B 381 LYS ILE ARG HIS ASN VAL GLU ASP GLY SER VAL GLN LEU SEQRES 26 B 381 ALA ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY SEQRES 27 B 381 PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN SEQRES 28 B 381 SER VAL LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS SEQRES 29 B 381 MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR SEQRES 30 B 381 LEU VAL PRO ARG MODRES 4XBI CRO A 215 GLY CHROMOPHORE MODRES 4XBI CRO B 215 GLY CHROMOPHORE HET CRO A 215 22 HET CRO B 215 22 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 B 401 5 HET SO4 B 402 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM SO4 SULFATE ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *382(H2 O) HELIX 1 AA1 THR A 8 SER A 17 1 10 HELIX 2 AA2 SER A 17 TYR A 25 1 9 HELIX 3 AA3 GLU A 31 LEU A 40 1 10 HELIX 4 AA4 GLY A 46 GLU A 54 1 9 HELIX 5 AA5 ASP A 58 GLN A 73 1 16 HELIX 6 AA6 GLY A 87 PHE A 104 1 18 HELIX 7 AA7 SER A 110 ASP A 122 1 13 HELIX 8 AA8 PHE A 125 TYR A 133 1 9 HELIX 9 AA9 ASN A 136 GLY A 149 1 14 HELIX 10 AB1 LYS A 152 THR A 158 5 7 HELIX 11 AB2 ALA A 186 ASN A 188 5 3 HELIX 12 AB3 PRO A 205 VAL A 210 5 6 HELIX 13 AB4 VAL A 217 SER A 221 5 5 HELIX 14 AB5 PRO A 224 HIS A 230 5 7 HELIX 15 AB6 ASP A 231 ALA A 236 1 6 HELIX 16 AB7 LYS A 305 ASN A 308 5 4 HELIX 17 AB8 THR B 8 TYR B 25 1 18 HELIX 18 AB9 GLU B 31 ASN B 41 1 11 HELIX 19 AC1 GLY B 46 SER B 55 1 10 HELIX 20 AC2 ASP B 58 GLN B 73 1 16 HELIX 21 AC3 GLY B 87 PHE B 104 1 18 HELIX 22 AC4 SER B 110 ASP B 122 1 13 HELIX 23 AC5 PHE B 125 LYS B 132 1 8 HELIX 24 AC6 ASN B 136 LEU B 156 1 21 HELIX 25 AC7 PRO B 205 VAL B 210 5 6 HELIX 26 AC8 VAL B 217 SER B 221 5 5 HELIX 27 AC9 PRO B 224 HIS B 230 5 7 HELIX 28 AD1 ASP B 231 ALA B 236 1 6 HELIX 29 AD2 LYS B 305 ASN B 308 5 4 SHEET 1 AA1 2 TYR A 29 VAL A 30 0 SHEET 2 AA1 2 ILE A 85 LEU A 86 1 O ILE A 85 N VAL A 30 SHEET 1 AA212 VAL A 161 VAL A 171 0 SHEET 2 AA212 HIS A 174 ASP A 185 -1 O GLY A 182 N ILE A 163 SHEET 3 AA212 LYS A 190 CYS A 197 -1 O LYS A 190 N ASP A 185 SHEET 4 AA212 HIS A 366 ALA A 376 -1 O MET A 367 N PHE A 195 SHEET 5 AA212 HIS A 348 SER A 357 -1 N SER A 351 O THR A 374 SHEET 6 AA212 HIS A 297 ASP A 304 -1 N HIS A 297 O THR A 352 SHEET 7 AA212 GLY A 309 ASN A 319 -1 O GLY A 309 N ASP A 304 SHEET 8 AA212 VAL A 325 PRO A 336 -1 O HIS A 330 N PHE A 314 SHEET 9 AA212 TYR A 241 PHE A 249 -1 N VAL A 242 O THR A 335 SHEET 10 AA212 THR A 254 GLU A 264 -1 O TYR A 255 N ILE A 247 SHEET 11 AA212 THR A 267 ILE A 277 -1 O VAL A 269 N LYS A 262 SHEET 12 AA212 VAL A 161 VAL A 171 1 N ASP A 170 O GLY A 276 SHEET 1 AA3 2 TYR B 29 VAL B 30 0 SHEET 2 AA3 2 ILE B 85 LEU B 86 1 O ILE B 85 N VAL B 30 SHEET 1 AA412 VAL B 161 VAL B 171 0 SHEET 2 AA412 HIS B 174 ASP B 185 -1 O PHE B 176 N GLY B 169 SHEET 3 AA412 LYS B 190 CYS B 197 -1 O LYS B 190 N ASP B 185 SHEET 4 AA412 HIS B 366 ALA B 376 -1 O MET B 367 N PHE B 195 SHEET 5 AA412 HIS B 348 SER B 357 -1 N VAL B 355 O LEU B 370 SHEET 6 AA412 HIS B 297 ASP B 304 -1 N HIS B 297 O THR B 352 SHEET 7 AA412 GLY B 309 ASN B 319 -1 O GLY B 309 N ASP B 304 SHEET 8 AA412 VAL B 325 PRO B 336 -1 O GLN B 326 N HIS B 318 SHEET 9 AA412 TYR B 241 PHE B 249 -1 N VAL B 242 O THR B 335 SHEET 10 AA412 THR B 254 GLU B 264 -1 O VAL B 261 N TYR B 241 SHEET 11 AA412 THR B 267 ILE B 277 -1 O THR B 267 N GLU B 264 SHEET 12 AA412 VAL B 161 VAL B 171 1 N ASP B 170 O GLY B 276 LINK C LEU A 213 N1 CRO A 215 1555 1555 1.25 LINK C3 CRO A 215 N VAL A 217 1555 1555 1.24 LINK C LEU B 213 N1 CRO B 215 1555 1555 1.38 LINK C3 CRO B 215 N VAL B 217 1555 1555 1.23 CISPEP 1 MET A 237 PRO A 238 0 5.49 CISPEP 2 MET B 237 PRO B 238 0 3.72 SITE 1 AC1 10 LYS A 175 PHE A 249 ASP A 251 ASP A 252 SITE 2 AC1 10 HOH A 511 HOH A 522 HOH A 527 HOH A 539 SITE 3 AC1 10 HOH A 544 HOH A 642 SITE 1 AC2 4 ARG A 222 PRO A 224 ASP A 225 HOH A 720 SITE 1 AC3 10 VAL A 204 PRO A 205 TRP A 206 PRO A 207 SITE 2 AC3 10 HIS A 288 HOH A 589 HOH A 608 HOH A 658 SITE 3 AC3 10 HOH A 675 HOH A 691 SITE 1 AC4 2 LYS B 72 LYS B 190 SITE 1 AC5 4 ARG B 222 PRO B 224 ASP B 225 HOH B 575 CRYST1 127.530 127.530 92.570 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007841 0.004527 0.000000 0.00000 SCALE2 0.000000 0.009054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010803 0.00000