HEADER OXIDOREDUCTASE 17-DEC-14 4XBW TITLE R2-LIKE LIGAND-BINDING OXIDASE WITH AEROBICALLY RECONSTITUTED TITLE 2 DIMANGANESE COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: R2-LIKE LIGAND-BINDING OXIDASE; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426); SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 GENE: GK2771; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-46 EK/LIC KEYWDS R2-LIKE LIGAND-BINDING OXIDASE, DIMANGANESE COFACTOR, RIBONUCLEOTIDE KEYWDS 2 REDUCTASE R2 SUBUNIT FOLD, METALLOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.GRIESE,M.HOGBOM REVDAT 3 10-JAN-24 4XBW 1 LINK ATOM REVDAT 2 28-OCT-15 4XBW 1 JRNL REVDAT 1 09-SEP-15 4XBW 0 JRNL AUTH J.J.GRIESE,R.KOSITZKI,P.SCHRAPERS,R.M.BRANCA,A.NORDSTROM, JRNL AUTH 2 J.LEHTIO,M.HAUMANN,M.HOGBOM JRNL TITL STRUCTURAL BASIS FOR OXYGEN ACTIVATION AT A HETERODINUCLEAR JRNL TITL 2 MANGANESE/IRON COFACTOR. JRNL REF J.BIOL.CHEM. V. 290 25254 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26324712 JRNL DOI 10.1074/JBC.M115.675223 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1606) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7744 - 4.1415 0.98 2693 143 0.1528 0.2144 REMARK 3 2 4.1415 - 3.2875 1.00 2609 137 0.1661 0.2027 REMARK 3 3 3.2875 - 2.8720 1.00 2589 138 0.1922 0.2277 REMARK 3 4 2.8720 - 2.6094 1.00 2576 133 0.1846 0.2486 REMARK 3 5 2.6094 - 2.4224 1.00 2568 136 0.1823 0.2235 REMARK 3 6 2.4224 - 2.2796 1.00 2545 137 0.1911 0.2128 REMARK 3 7 2.2796 - 2.1654 1.00 2539 132 0.2031 0.2592 REMARK 3 8 2.1654 - 2.0711 1.00 2541 134 0.2441 0.2711 REMARK 3 9 2.0711 - 1.9914 0.98 2521 132 0.2751 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 2355 REMARK 3 ANGLE : 1.313 3161 REMARK 3 CHIRALITY : 0.061 330 REMARK 3 PLANARITY : 0.008 407 REMARK 3 DIHEDRAL : 16.022 876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4HR4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5 % (W/V) PEG1500, 0.1 M HEPES-NA, REMARK 280 PH 7.0, 22.5 % (W/V) PEG1500, 0.1 M HEPES-NA, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.18700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.57650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.03350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.18700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.57650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.03350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.18700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.57650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.03350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.18700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.57650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.03350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 VAL A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 6 REMARK 465 PHE A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 VAL A 10 REMARK 465 LYS A 11 REMARK 465 ALA A 12 REMARK 465 LYS A 287 REMARK 465 ARG A 288 REMARK 465 VAL A 289 REMARK 465 ASP A 290 REMARK 465 VAL A 291 REMARK 465 VAL A 292 REMARK 465 GLU A 293 REMARK 465 GLY A 294 REMARK 465 LEU A 295 REMARK 465 GLU A 296 REMARK 465 LYS A 297 REMARK 465 THR A 298 REMARK 465 ALA A 299 REMARK 465 ALA A 300 REMARK 465 GLU A 301 REMARK 465 SER A 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 221 HE ARG A 285 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 262 CB GLU A 262 CG 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 121 115.14 -39.57 REMARK 500 GLU A 137 -66.58 -130.79 REMARK 500 ILE A 165 -62.18 -98.08 REMARK 500 THR A 169 -56.11 -120.63 REMARK 500 ILE A 181 -63.58 -97.11 REMARK 500 ASP A 220 102.51 -160.11 REMARK 500 GLU A 221 -7.47 -59.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 OE2 REMARK 620 2 GLU A 102 OE2 95.5 REMARK 620 3 HIS A 105 ND1 99.2 89.7 REMARK 620 4 GLU A 202 OE1 158.8 103.5 90.3 REMARK 620 5 PLM A 404 O1 85.6 108.0 161.2 79.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 102 OE1 REMARK 620 2 GLU A 167 OE2 96.7 REMARK 620 3 GLU A 202 OE1 105.2 157.3 REMARK 620 4 GLU A 202 OE2 164.7 98.6 59.6 REMARK 620 5 HIS A 205 ND1 84.8 94.4 93.4 93.8 REMARK 620 6 PLM A 404 O2 75.7 83.9 95.7 106.2 160.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HR0 RELATED DB: PDB REMARK 900 4HR0 CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED MN/FE REMARK 900 COFACTOR. REMARK 900 RELATED ID: 4HR4 RELATED DB: PDB REMARK 900 4HR4 CONTAINS THE SAME PROTEIN WITH ANAEROBICALLY RECONSTITUTED MN/ REMARK 900 FE COFACTOR. REMARK 900 RELATED ID: 4HR5 RELATED DB: PDB REMARK 900 4HR5 CONTAINS THE SAME PROTEIN WITHOUT METAL COFACTOR. REMARK 900 RELATED ID: 4XB9 RELATED DB: PDB REMARK 900 4XB9 CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED REMARK 900 DIIRON COFACTOR. REMARK 900 RELATED ID: 4XBV RELATED DB: PDB REMARK 900 4XBV CONTAINS THE SAME PROTEIN WITH ANAEROBICALLY RECONSTITUTED REMARK 900 DIIRON COFACTOR. DBREF 4XBW A 1 302 UNP Q5KW80 Q5KW80_GEOKA 1 302 SEQADV 4XBW MET A -13 UNP Q5KW80 INITIATING METHIONINE SEQADV 4XBW ALA A -12 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW HIS A -11 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW HIS A -10 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW HIS A -9 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW HIS A -8 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW HIS A -7 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW HIS A -6 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW VAL A -5 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW ASP A -4 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW ASP A -3 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW ASP A -2 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW ASP A -1 UNP Q5KW80 EXPRESSION TAG SEQADV 4XBW LYS A 0 UNP Q5KW80 EXPRESSION TAG SEQRES 1 A 316 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 316 LYS MET VAL HIS HIS ASP GLY PHE GLN THR VAL LYS ALA SEQRES 3 A 316 THR ILE ASP TRP GLU HIS PRO MET PHE LYS LEU TYR GLU SEQRES 4 A 316 LYS ALA LYS ARG ASN GLY LYS TRP ASN PRO ALA ASP ILE SEQRES 5 A 316 ASP PHE SER GLN ASP GLN LYS ASP PHE ALA SER LEU THR SEQRES 6 A 316 SER GLU GLU LYS ILE SER ALA LEU PRO LEU VAL ALA GLY SEQRES 7 A 316 PHE SER ALA GLY GLU GLU ALA VAL THR LEU ASP ILE LEU SEQRES 8 A 316 PRO MET ALA HIS ALA LEU ALA ARG GLN GLY ARG LEU GLU SEQRES 9 A 316 ASP VAL LEU PHE LEU THR THR PHE MET HIS ASP GLU ALA SEQRES 10 A 316 LYS HIS VAL GLU MET PHE SER ARG TRP GLN GLN ALA VAL SEQRES 11 A 316 GLY ILE GLY GLN MET ASP LEU SER VAL PHE HIS ASN ASP SEQRES 12 A 316 HIS TYR LYS ARG ILE PHE TYR GLU ALA LEU PRO GLU ALA SEQRES 13 A 316 MET ASN ARG LEU TYR ALA ASP ASP SER PRO GLU ALA VAL SEQRES 14 A 316 ILE ARG ALA ALA THR VAL TYR ASN MET ILE VAL GLU GLY SEQRES 15 A 316 THR LEU ALA GLU SER GLY TYR TYR THR PHE ARG GLN ILE SEQRES 16 A 316 TYR LYS LYS ALA GLY LEU PHE PRO GLY LEU LEU GLN GLY SEQRES 17 A 316 ILE ASP TYR LEU ASN MET ASP GLU GLY ARG HIS ILE GLN SEQRES 18 A 316 PHE GLY ILE TYR THR ILE GLN ARG ILE VAL ASN GLU ASP SEQRES 19 A 316 GLU ARG TYR TYR GLU LEU PHE ILE ARG TYR MET ASP GLU SEQRES 20 A 316 LEU TRP PRO HIS VAL ILE GLY TYR VAL ASP TYR LEU THR SEQRES 21 A 316 GLU LEU GLY LYS ARG GLN GLN GLN LEU ALA ARG THR TYR SEQRES 22 A 316 ALA LEU GLU ILE ASP TYR ASP LEU LEU ARG HIS TYR VAL SEQRES 23 A 316 ILE LYS GLN PHE ASN LEU ARG LYS LYS GLN ILE SER ARG SEQRES 24 A 316 THR LYS ARG VAL ASP VAL VAL GLU GLY LEU GLU LYS THR SEQRES 25 A 316 ALA ALA GLU SER HET MN A 401 1 HET MN A 402 1 HET MN A 403 1 HET PLM A 404 49 HETNAM MN MANGANESE (II) ION HETNAM PLM PALMITIC ACID FORMUL 2 MN 3(MN 2+) FORMUL 5 PLM C16 H32 O2 FORMUL 6 HOH *53(H2 O) HELIX 1 AA1 HIS A 18 GLY A 31 1 14 HELIX 2 AA2 ASN A 34 ILE A 38 5 5 HELIX 3 AA3 PHE A 40 LEU A 50 1 11 HELIX 4 AA4 THR A 51 ILE A 76 1 26 HELIX 5 AA5 ILE A 76 GLN A 86 1 11 HELIX 6 AA6 ARG A 88 GLY A 117 1 30 HELIX 7 AA7 ASP A 122 HIS A 127 5 6 HELIX 8 AA8 ASN A 128 TYR A 136 1 9 HELIX 9 AA9 GLU A 137 ARG A 145 1 9 HELIX 10 AB1 LEU A 146 ALA A 148 5 3 HELIX 11 AB2 SER A 151 ASN A 163 1 13 HELIX 12 AB3 THR A 169 GLY A 186 1 18 HELIX 13 AB4 PHE A 188 ASN A 218 1 31 HELIX 14 AB5 GLU A 221 GLN A 252 1 32 HELIX 15 AB6 GLN A 253 TYR A 259 1 7 HELIX 16 AB7 ASP A 264 GLN A 282 1 19 LINK OE2 GLU A 69 MN MN A 401 1555 1555 2.10 LINK OE2 GLU A 102 MN MN A 401 1555 1555 2.12 LINK OE1 GLU A 102 MN MN A 402 1555 1555 2.20 LINK ND1 HIS A 105 MN MN A 401 1555 1555 2.15 LINK NE2 HIS A 130 MN MN A 403 1555 1555 2.29 LINK OE2 GLU A 167 MN MN A 402 1555 1555 1.98 LINK OE1 GLU A 202 MN MN A 401 1555 1555 2.41 LINK OE1 GLU A 202 MN MN A 402 1555 1555 2.35 LINK OE2 GLU A 202 MN MN A 402 1555 1555 2.22 LINK ND1 HIS A 205 MN MN A 402 1555 1555 2.27 LINK MN MN A 401 O1 PLM A 404 1555 1555 1.52 LINK MN MN A 402 O2 PLM A 404 1555 1555 2.01 SITE 1 AC1 6 GLU A 69 GLU A 102 HIS A 105 GLU A 202 SITE 2 AC1 6 MN A 402 PLM A 404 SITE 1 AC2 6 GLU A 102 GLU A 167 GLU A 202 HIS A 205 SITE 2 AC2 6 MN A 401 PLM A 404 SITE 1 AC3 1 HIS A 130 SITE 1 AC4 14 GLY A 64 PHE A 65 GLU A 69 VAL A 72 SITE 2 AC4 14 GLU A 102 HIS A 105 PHE A 135 GLU A 167 SITE 3 AC4 14 LEU A 170 THR A 177 GLU A 202 LEU A 268 SITE 4 AC4 14 MN A 401 MN A 402 CRYST1 56.374 97.153 128.067 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007808 0.00000