HEADER TRANSFERASE 19-DEC-14 4XDA TITLE VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH RIBOSE, ADP AND SODIUM TITLE 2 ION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.7.1.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 ATCC: 39541; SOURCE 7 GENE: RBSK, VC0395_0007, VC395_A0124; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 -DE3; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28 A(+) KEYWDS RIBOKINASE, RIBOSE, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PAUL,M.D.PATRA,U.SEN REVDAT 3 20-MAR-24 4XDA 1 HETSYN REVDAT 2 29-JUL-20 4XDA 1 COMPND SOURCE KEYWDS JRNL REVDAT 2 2 1 REMARK HETNAM LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 04-MAR-15 4XDA 0 JRNL AUTH R.PAUL,M.D.PATRA,U.SEN JRNL TITL CRYSTAL STRUCTURE OF APO AND LIGAND BOUND VIBRIO CHOLERAE JRNL TITL 2 RIBOKINASE (VC-RK): ROLE OF MONOVALENT CATION INDUCED JRNL TITL 3 ACTIVATION AND STRUCTURAL FLEXIBILITY IN SUGAR JRNL TITL 4 PHOSPHORYLATION JRNL REF ADV.EXP.MED.BIOL. V. 842 293 2015 JRNL REFN ISSN 0065-2598 JRNL PMID 25408351 JRNL DOI 10.1007/978-3-319-11280-0_19 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.PAUL,M.D.PATRA,R.BANERJEE,U.SEN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF A REMARK 1 TITL 2 RIBOKINASE FROM VIBRIO CHOLERAE O395. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 70 1098 2014 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 25084391 REMARK 1 DOI 10.1107/S2053230X14014411 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 117278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4760 - 5.4242 0.98 3778 208 0.1805 0.1941 REMARK 3 2 5.4242 - 4.3107 0.98 3772 233 0.1586 0.1838 REMARK 3 3 4.3107 - 3.7674 0.98 3792 191 0.1551 0.1705 REMARK 3 4 3.7674 - 3.4236 0.98 3814 181 0.1749 0.2085 REMARK 3 5 3.4236 - 3.1786 0.97 3766 200 0.1813 0.2082 REMARK 3 6 3.1786 - 2.9914 0.97 3718 228 0.1823 0.2210 REMARK 3 7 2.9914 - 2.8418 0.97 3756 200 0.1840 0.2211 REMARK 3 8 2.8418 - 2.7182 0.97 3746 192 0.1916 0.2556 REMARK 3 9 2.7182 - 2.6136 0.97 3784 196 0.1896 0.2375 REMARK 3 10 2.6136 - 2.5235 0.97 3725 207 0.1896 0.2586 REMARK 3 11 2.5235 - 2.4447 0.97 3704 220 0.1943 0.2407 REMARK 3 12 2.4447 - 2.3748 0.97 3770 188 0.1919 0.2243 REMARK 3 13 2.3748 - 2.3123 0.96 3744 176 0.1871 0.2506 REMARK 3 14 2.3123 - 2.2559 0.96 3740 198 0.1919 0.2478 REMARK 3 15 2.2559 - 2.2047 0.96 3687 186 0.1899 0.2391 REMARK 3 16 2.2047 - 2.1578 0.96 3731 196 0.1940 0.2338 REMARK 3 17 2.1578 - 2.1146 0.96 3724 186 0.1937 0.2468 REMARK 3 18 2.1146 - 2.0747 0.96 3732 198 0.2002 0.2671 REMARK 3 19 2.0747 - 2.0377 0.96 3691 175 0.2048 0.2675 REMARK 3 20 2.0377 - 2.0032 0.95 3696 234 0.2054 0.2551 REMARK 3 21 2.0032 - 1.9709 0.95 3638 192 0.2073 0.2510 REMARK 3 22 1.9709 - 1.9406 0.95 3740 186 0.2007 0.2427 REMARK 3 23 1.9406 - 1.9120 0.95 3662 180 0.2160 0.2504 REMARK 3 24 1.9120 - 1.8851 0.95 3684 189 0.2086 0.2827 REMARK 3 25 1.8851 - 1.8596 0.94 3582 192 0.2149 0.2518 REMARK 3 26 1.8596 - 1.8355 0.94 3758 167 0.2242 0.2649 REMARK 3 27 1.8355 - 1.8125 0.94 3564 184 0.2397 0.2893 REMARK 3 28 1.8125 - 1.7907 0.93 3688 194 0.2496 0.3161 REMARK 3 29 1.7907 - 1.7699 0.94 3597 204 0.2510 0.2844 REMARK 3 30 1.7699 - 1.7500 0.93 3613 201 0.2553 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 9350 REMARK 3 ANGLE : 1.278 12759 REMARK 3 CHIRALITY : 0.160 1528 REMARK 3 PLANARITY : 0.005 1653 REMARK 3 DIHEDRAL : 15.494 3397 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2191 -12.9429 0.5141 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1770 REMARK 3 T33: 0.1169 T12: -0.0255 REMARK 3 T13: -0.0107 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0417 L22: 0.0880 REMARK 3 L33: 0.0702 L12: -0.0013 REMARK 3 L13: -0.0508 L23: -0.0622 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.1466 S13: 0.0175 REMARK 3 S21: -0.0273 S22: 0.0272 S23: -0.0089 REMARK 3 S31: -0.0086 S32: -0.0303 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6974 -7.5666 11.9404 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.1368 REMARK 3 T33: 0.1274 T12: -0.0131 REMARK 3 T13: -0.0164 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0813 L22: 0.0998 REMARK 3 L33: 0.0617 L12: -0.0211 REMARK 3 L13: -0.0644 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0658 S13: 0.0133 REMARK 3 S21: 0.0485 S22: 0.0001 S23: -0.0181 REMARK 3 S31: -0.0330 S32: 0.0060 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6563 0.9612 8.1819 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.1239 REMARK 3 T33: 0.1571 T12: -0.0428 REMARK 3 T13: 0.0318 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.2364 L22: 0.1439 REMARK 3 L33: 0.0886 L12: -0.1494 REMARK 3 L13: -0.1230 L23: 0.0351 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.2335 S13: 0.1350 REMARK 3 S21: -0.0912 S22: 0.0219 S23: 0.0415 REMARK 3 S31: -0.2343 S32: -0.0577 S33: 0.0576 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2658 11.5718 10.1404 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.1510 REMARK 3 T33: 0.2651 T12: -0.0217 REMARK 3 T13: 0.0321 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.0104 L22: 0.0009 REMARK 3 L33: 0.0024 L12: 0.0023 REMARK 3 L13: -0.0062 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0696 S13: 0.0958 REMARK 3 S21: -0.0172 S22: 0.0819 S23: 0.0019 REMARK 3 S31: -0.2038 S32: 0.0488 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6716 9.2433 -4.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.2913 REMARK 3 T33: 0.2581 T12: 0.0845 REMARK 3 T13: 0.0022 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 0.0743 L22: 0.1500 REMARK 3 L33: 0.0105 L12: 0.0971 REMARK 3 L13: -0.0228 L23: -0.0300 REMARK 3 S TENSOR REMARK 3 S11: 0.1500 S12: 0.3927 S13: 0.2012 REMARK 3 S21: 0.0420 S22: -0.0265 S23: 0.1404 REMARK 3 S31: -0.1691 S32: -0.2071 S33: 0.0064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8904 10.8219 -12.5165 REMARK 3 T TENSOR REMARK 3 T11: 0.4025 T22: 0.3807 REMARK 3 T33: 0.2884 T12: 0.0336 REMARK 3 T13: 0.0255 T23: 0.1915 REMARK 3 L TENSOR REMARK 3 L11: 0.3410 L22: 0.2134 REMARK 3 L33: 0.1687 L12: 0.2743 REMARK 3 L13: 0.2266 L23: 0.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: 0.3317 S13: 0.1514 REMARK 3 S21: -0.0010 S22: 0.1120 S23: -0.0010 REMARK 3 S31: -0.3631 S32: -0.1100 S33: 0.1050 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5284 -5.9681 -5.8003 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.2246 REMARK 3 T33: 0.1580 T12: -0.0228 REMARK 3 T13: -0.0156 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0233 L22: 0.0250 REMARK 3 L33: 0.0516 L12: 0.0048 REMARK 3 L13: -0.0205 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: 0.3035 S13: 0.0643 REMARK 3 S21: 0.0237 S22: 0.0358 S23: 0.0071 REMARK 3 S31: -0.0775 S32: -0.0355 S33: 0.0011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8133 -25.6911 7.5074 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1720 REMARK 3 T33: 0.1473 T12: 0.0038 REMARK 3 T13: -0.0283 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2379 L22: 0.2410 REMARK 3 L33: 0.1339 L12: 0.0089 REMARK 3 L13: -0.0920 L23: 0.1895 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.0792 S13: 0.0345 REMARK 3 S21: 0.0159 S22: 0.0288 S23: -0.0000 REMARK 3 S31: -0.0200 S32: -0.0149 S33: 0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.3055 -33.8531 1.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.1887 REMARK 3 T33: 0.1167 T12: -0.0176 REMARK 3 T13: -0.0348 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.5924 L22: 0.2215 REMARK 3 L33: 0.1778 L12: 0.1023 REMARK 3 L13: -0.1747 L23: -0.0525 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: 0.2028 S13: 0.0309 REMARK 3 S21: -0.0535 S22: 0.0296 S23: 0.0814 REMARK 3 S31: 0.0166 S32: -0.0763 S33: 0.0006 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5487 -32.6583 -28.5711 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.0959 REMARK 3 T33: 0.2041 T12: 0.0499 REMARK 3 T13: 0.0386 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.1507 L22: 0.0038 REMARK 3 L33: 0.1488 L12: -0.0010 REMARK 3 L13: 0.0734 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.1835 S12: -0.1428 S13: -0.0600 REMARK 3 S21: 0.0955 S22: -0.0005 S23: 0.2385 REMARK 3 S31: -0.0352 S32: 0.2149 S33: -0.0816 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 40 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7805 -46.4252 -33.2369 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: -0.1369 REMARK 3 T33: 0.2918 T12: 0.1762 REMARK 3 T13: 0.1808 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.1982 L22: 0.1523 REMARK 3 L33: 0.2166 L12: 0.1129 REMARK 3 L13: -0.0642 L23: 0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.2548 S12: -0.1294 S13: -0.1941 REMARK 3 S21: -0.0279 S22: 0.1649 S23: -0.0296 REMARK 3 S31: -0.0821 S32: 0.3142 S33: -0.0654 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2206 -54.4392 -40.8675 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.1787 REMARK 3 T33: 0.3381 T12: -0.0454 REMARK 3 T13: 0.1475 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.0023 L22: 0.0036 REMARK 3 L33: -0.0047 L12: -0.0016 REMARK 3 L13: 0.0045 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: 0.0715 S13: -0.0356 REMARK 3 S21: -0.0507 S22: -0.0685 S23: 0.0237 REMARK 3 S31: 0.1462 S32: -0.0955 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2293 -42.7983 -34.9589 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.1863 REMARK 3 T33: 0.3649 T12: -0.0314 REMARK 3 T13: 0.0301 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0198 L22: 0.0011 REMARK 3 L33: 0.0111 L12: -0.0031 REMARK 3 L13: -0.0093 L23: -0.0070 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: 0.0434 S13: -0.1293 REMARK 3 S21: -0.0145 S22: 0.1517 S23: 0.1998 REMARK 3 S31: -0.0066 S32: -0.2104 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 200 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1962 -45.0787 -26.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: 0.0604 REMARK 3 T33: 0.3483 T12: 0.1031 REMARK 3 T13: 0.1351 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.0507 L22: 0.0800 REMARK 3 L33: 0.3149 L12: -0.0097 REMARK 3 L13: -0.0775 L23: 0.1548 REMARK 3 S TENSOR REMARK 3 S11: -0.1890 S12: -0.0702 S13: -0.1528 REMARK 3 S21: 0.0552 S22: 0.0487 S23: 0.2473 REMARK 3 S31: -0.0239 S32: -0.2136 S33: -0.0521 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 240 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3646 -45.0241 -16.4642 REMARK 3 T TENSOR REMARK 3 T11: 0.2973 T22: 0.1357 REMARK 3 T33: 0.2809 T12: 0.1246 REMARK 3 T13: 0.1653 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.0450 L22: 0.0417 REMARK 3 L33: 0.2035 L12: 0.0479 REMARK 3 L13: 0.0169 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: -0.1609 S13: -0.1333 REMARK 3 S21: 0.1430 S22: 0.0586 S23: 0.1964 REMARK 3 S31: -0.0577 S32: 0.0329 S33: -0.1825 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8879 -20.2623 -35.6309 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.1631 REMARK 3 T33: 0.1596 T12: 0.0128 REMARK 3 T13: -0.0251 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.0093 L22: 0.2828 REMARK 3 L33: 0.1583 L12: 0.0425 REMARK 3 L13: -0.0367 L23: 0.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0372 S13: 0.0028 REMARK 3 S21: -0.0399 S22: 0.0003 S23: 0.0333 REMARK 3 S31: 0.1255 S32: 0.0835 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 120 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0674 -0.9557 -39.9087 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.1505 REMARK 3 T33: 0.1256 T12: -0.0224 REMARK 3 T13: -0.0242 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.2196 L22: 0.3735 REMARK 3 L33: 0.3897 L12: 0.0447 REMARK 3 L13: -0.1723 L23: -0.3412 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: -0.0299 S13: -0.0455 REMARK 3 S21: 0.0508 S22: -0.0210 S23: 0.0301 REMARK 3 S31: -0.1080 S32: 0.0911 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 4XDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117286 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGULAR PARALLELEPIPED, THE ENTRY CONTAINS FRIEDEL REMARK 200 PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, MES BUFFER 0.1MM WAS USED AS REMARK 280 PRECIPITANT. CRYSTAL GROWN IN 7 DAYS., PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 687 O HOH C 733 1.96 REMARK 500 O HOH B 718 O HOH B 721 2.03 REMARK 500 O HOH B 562 O HOH B 765 2.08 REMARK 500 O HOH B 765 O HOH B 767 2.11 REMARK 500 O HOH D 737 O HOH D 762 2.12 REMARK 500 O HOH D 568 O HOH D 569 2.12 REMARK 500 N ALA C 249 O HOH C 733 2.12 REMARK 500 O HOH B 698 O HOH B 789 2.13 REMARK 500 O HOH A 730 O HOH B 721 2.14 REMARK 500 O HOH B 509 O HOH B 530 2.14 REMARK 500 O HOH B 771 O HOH B 789 2.15 REMARK 500 O HOH D 712 O HOH D 832 2.15 REMARK 500 OG SER B 73 O HOH B 792 2.15 REMARK 500 O HOH D 790 O HOH D 833 2.16 REMARK 500 O HOH D 765 O HOH D 833 2.16 REMARK 500 O HOH C 707 O HOH C 719 2.17 REMARK 500 O HOH D 524 O HOH D 525 2.17 REMARK 500 O3B ADP C 402 O HOH C 641 2.17 REMARK 500 O HOH D 602 O HOH D 793 2.17 REMARK 500 O HOH D 785 O HOH D 801 2.17 REMARK 500 O HOH B 524 O HOH B 544 2.18 REMARK 500 O HOH C 688 O HOH C 692 2.18 REMARK 500 O HOH A 628 O HOH A 749 2.18 REMARK 500 O HOH B 556 O HOH B 560 2.19 REMARK 500 O HOH C 528 O HOH C 532 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 541 O HOH D 793 1556 2.08 REMARK 500 O HOH A 541 O HOH D 568 1556 2.14 REMARK 500 O HOH B 551 O HOH D 516 1456 2.15 REMARK 500 O HOH B 542 O HOH D 544 1556 2.16 REMARK 500 O HOH C 741 O HOH D 590 1545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 207 CB - CG - OD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP D 207 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 26.62 80.97 REMARK 500 GLU A 112 -127.49 44.58 REMARK 500 GLN A 138 -160.12 -128.73 REMARK 500 ALA A 156 30.46 -150.37 REMARK 500 ASN A 231 77.38 36.22 REMARK 500 ASP A 246 118.45 -167.99 REMARK 500 ALA A 288 -87.24 -63.04 REMARK 500 GLU B 112 -126.21 45.51 REMARK 500 GLN B 138 -161.56 -129.35 REMARK 500 ALA B 288 -100.68 -69.43 REMARK 500 SER C 20 -178.26 -171.31 REMARK 500 GLN C 52 24.16 81.15 REMARK 500 GLU C 112 -128.38 46.61 REMARK 500 GLN C 138 -157.77 -128.48 REMARK 500 ASP C 246 115.75 -175.24 REMARK 500 ALA C 288 -83.26 -66.34 REMARK 500 SER D 102 -126.11 -68.07 REMARK 500 GLU D 112 -125.41 46.30 REMARK 500 GLN D 138 -158.96 -130.62 REMARK 500 ALA D 288 -88.43 -112.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 752 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 758 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B 760 DISTANCE = 8.02 ANGSTROMS REMARK 525 HOH C 695 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH C 705 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH C 721 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH C 725 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH C 736 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH C 743 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH D 834 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH D 842 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 246 O REMARK 620 2 SER A 282 O 109.1 REMARK 620 3 ARG A 285 O 106.5 85.2 REMARK 620 4 HOH A 565 O 93.8 152.6 102.9 REMARK 620 5 HOH A 568 O 92.6 75.8 156.7 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 246 O REMARK 620 2 SER B 282 O 105.3 REMARK 620 3 ARG B 285 O 107.8 88.5 REMARK 620 4 HOH B 593 O 102.2 151.7 89.3 REMARK 620 5 HOH B 633 O 79.9 87.2 171.9 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 246 O REMARK 620 2 SER C 282 O 113.2 REMARK 620 3 ARG C 285 O 99.7 79.4 REMARK 620 4 HOH C 643 O 100.9 86.4 158.3 REMARK 620 5 HOH C 687 O 94.7 152.1 95.7 89.2 REMARK 620 6 HOH C 733 O 87.3 137.6 135.6 52.4 39.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 246 O REMARK 620 2 SER D 282 O 88.0 REMARK 620 3 ARG D 285 O 106.6 90.1 REMARK 620 4 GLY D 287 O 112.4 155.8 95.9 REMARK 620 5 SER D 291 OG 154.1 78.9 95.8 77.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X8F RELATED DB: PDB REMARK 900 4X8F CONTAINS THE SAME PROTEIN WITHOUT LIGAND. REMARK 900 RELATED ID: 4XCK RELATED DB: PDB REMARK 900 4XCK CONTAINS THE SAME PROTEIN IN ADP, RIBOSE AND CESIUM ION BOUND REMARK 900 FORM. DBREF 4XDA A 1 306 UNP A5F1B7 A5F1B7_VIBC3 1 306 DBREF 4XDA B 1 306 UNP A5F1B7 A5F1B7_VIBC3 1 306 DBREF 4XDA C 1 306 UNP A5F1B7 A5F1B7_VIBC3 1 306 DBREF 4XDA D 1 306 UNP A5F1B7 A5F1B7_VIBC3 1 306 SEQADV 4XDA GLY A -2 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA SER A -1 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA HIS A 0 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA GLY B -2 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA SER B -1 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA HIS B 0 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA GLY C -2 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA SER C -1 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA HIS C 0 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA GLY D -2 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA SER D -1 UNP A5F1B7 EXPRESSION TAG SEQADV 4XDA HIS D 0 UNP A5F1B7 EXPRESSION TAG SEQRES 1 A 309 GLY SER HIS MET ASN LYS LEU VAL VAL LEU GLY SER VAL SEQRES 2 A 309 ASN ALA ASP HIS VAL LEU GLN VAL PRO SER PHE PRO ARG SEQRES 3 A 309 PRO GLY GLU THR LEU HIS GLY ARG ASN TYR GLN VAL ILE SEQRES 4 A 309 PRO GLY GLY LYS GLY ALA ASN GLN ALA VAL ALA ALA ALA SEQRES 5 A 309 ARG MET GLN ALA ASP VAL GLY PHE ILE ALA CYS VAL GLY SEQRES 6 A 309 ASP ASP SER PHE GLY ILE ASN ILE ARG GLU SER PHE LYS SEQRES 7 A 309 LEU ASP GLY ILE ASN THR ALA GLY VAL LYS LEU GLN PRO SEQRES 8 A 309 ASN CYS PRO THR GLY ILE ALA MET ILE GLN VAL SER ASP SEQRES 9 A 309 SER GLY GLU ASN SER ILE CYS ILE SER ALA GLU ALA ASN SEQRES 10 A 309 ALA LYS LEU THR ALA ALA ALA ILE GLU PRO ASP LEU ALA SEQRES 11 A 309 ALA ILE ARG ASP ALA ARG TYR LEU LEU MET GLN LEU GLU SEQRES 12 A 309 THR PRO LEU ASP GLY ILE LEU LYS ALA ALA GLN GLU ALA SEQRES 13 A 309 LYS THR ALA LYS THR ASN VAL ILE LEU ASN PRO ALA PRO SEQRES 14 A 309 ALA ARG GLU LEU PRO ASP GLU LEU LEU LYS CYS VAL ASP SEQRES 15 A 309 LEU ILE THR PRO ASN GLU THR GLU ALA GLU VAL LEU THR SEQRES 16 A 309 GLY ILE THR VAL TYR ASP ASP SER SER ALA GLN GLN ALA SEQRES 17 A 309 ALA ASP ALA LEU HIS CYS LYS GLY ILE GLU ILE VAL ILE SEQRES 18 A 309 ILE THR LEU GLY SER LYS GLY VAL TRP LEU SER GLN ASN SEQRES 19 A 309 GLY ARG GLY GLN ARG ILE PRO GLY PHE VAL VAL LYS ALA SEQRES 20 A 309 THR ASP THR THR ALA ALA GLY ASP THR PHE ASN GLY ALA SEQRES 21 A 309 LEU VAL THR GLY LEU LEU GLN GLU MET PRO LEU GLU SER SEQRES 22 A 309 ALA ILE LYS PHE ALA HIS ALA ALA ALA ALA ILE SER VAL SEQRES 23 A 309 THR ARG PHE GLY ALA GLN THR SER ILE PRO THR ARG ALA SEQRES 24 A 309 GLU VAL GLU ALA PHE LEU ALA GLU HIS SER SEQRES 1 B 309 GLY SER HIS MET ASN LYS LEU VAL VAL LEU GLY SER VAL SEQRES 2 B 309 ASN ALA ASP HIS VAL LEU GLN VAL PRO SER PHE PRO ARG SEQRES 3 B 309 PRO GLY GLU THR LEU HIS GLY ARG ASN TYR GLN VAL ILE SEQRES 4 B 309 PRO GLY GLY LYS GLY ALA ASN GLN ALA VAL ALA ALA ALA SEQRES 5 B 309 ARG MET GLN ALA ASP VAL GLY PHE ILE ALA CYS VAL GLY SEQRES 6 B 309 ASP ASP SER PHE GLY ILE ASN ILE ARG GLU SER PHE LYS SEQRES 7 B 309 LEU ASP GLY ILE ASN THR ALA GLY VAL LYS LEU GLN PRO SEQRES 8 B 309 ASN CYS PRO THR GLY ILE ALA MET ILE GLN VAL SER ASP SEQRES 9 B 309 SER GLY GLU ASN SER ILE CYS ILE SER ALA GLU ALA ASN SEQRES 10 B 309 ALA LYS LEU THR ALA ALA ALA ILE GLU PRO ASP LEU ALA SEQRES 11 B 309 ALA ILE ARG ASP ALA ARG TYR LEU LEU MET GLN LEU GLU SEQRES 12 B 309 THR PRO LEU ASP GLY ILE LEU LYS ALA ALA GLN GLU ALA SEQRES 13 B 309 LYS THR ALA LYS THR ASN VAL ILE LEU ASN PRO ALA PRO SEQRES 14 B 309 ALA ARG GLU LEU PRO ASP GLU LEU LEU LYS CYS VAL ASP SEQRES 15 B 309 LEU ILE THR PRO ASN GLU THR GLU ALA GLU VAL LEU THR SEQRES 16 B 309 GLY ILE THR VAL TYR ASP ASP SER SER ALA GLN GLN ALA SEQRES 17 B 309 ALA ASP ALA LEU HIS CYS LYS GLY ILE GLU ILE VAL ILE SEQRES 18 B 309 ILE THR LEU GLY SER LYS GLY VAL TRP LEU SER GLN ASN SEQRES 19 B 309 GLY ARG GLY GLN ARG ILE PRO GLY PHE VAL VAL LYS ALA SEQRES 20 B 309 THR ASP THR THR ALA ALA GLY ASP THR PHE ASN GLY ALA SEQRES 21 B 309 LEU VAL THR GLY LEU LEU GLN GLU MET PRO LEU GLU SER SEQRES 22 B 309 ALA ILE LYS PHE ALA HIS ALA ALA ALA ALA ILE SER VAL SEQRES 23 B 309 THR ARG PHE GLY ALA GLN THR SER ILE PRO THR ARG ALA SEQRES 24 B 309 GLU VAL GLU ALA PHE LEU ALA GLU HIS SER SEQRES 1 C 309 GLY SER HIS MET ASN LYS LEU VAL VAL LEU GLY SER VAL SEQRES 2 C 309 ASN ALA ASP HIS VAL LEU GLN VAL PRO SER PHE PRO ARG SEQRES 3 C 309 PRO GLY GLU THR LEU HIS GLY ARG ASN TYR GLN VAL ILE SEQRES 4 C 309 PRO GLY GLY LYS GLY ALA ASN GLN ALA VAL ALA ALA ALA SEQRES 5 C 309 ARG MET GLN ALA ASP VAL GLY PHE ILE ALA CYS VAL GLY SEQRES 6 C 309 ASP ASP SER PHE GLY ILE ASN ILE ARG GLU SER PHE LYS SEQRES 7 C 309 LEU ASP GLY ILE ASN THR ALA GLY VAL LYS LEU GLN PRO SEQRES 8 C 309 ASN CYS PRO THR GLY ILE ALA MET ILE GLN VAL SER ASP SEQRES 9 C 309 SER GLY GLU ASN SER ILE CYS ILE SER ALA GLU ALA ASN SEQRES 10 C 309 ALA LYS LEU THR ALA ALA ALA ILE GLU PRO ASP LEU ALA SEQRES 11 C 309 ALA ILE ARG ASP ALA ARG TYR LEU LEU MET GLN LEU GLU SEQRES 12 C 309 THR PRO LEU ASP GLY ILE LEU LYS ALA ALA GLN GLU ALA SEQRES 13 C 309 LYS THR ALA LYS THR ASN VAL ILE LEU ASN PRO ALA PRO SEQRES 14 C 309 ALA ARG GLU LEU PRO ASP GLU LEU LEU LYS CYS VAL ASP SEQRES 15 C 309 LEU ILE THR PRO ASN GLU THR GLU ALA GLU VAL LEU THR SEQRES 16 C 309 GLY ILE THR VAL TYR ASP ASP SER SER ALA GLN GLN ALA SEQRES 17 C 309 ALA ASP ALA LEU HIS CYS LYS GLY ILE GLU ILE VAL ILE SEQRES 18 C 309 ILE THR LEU GLY SER LYS GLY VAL TRP LEU SER GLN ASN SEQRES 19 C 309 GLY ARG GLY GLN ARG ILE PRO GLY PHE VAL VAL LYS ALA SEQRES 20 C 309 THR ASP THR THR ALA ALA GLY ASP THR PHE ASN GLY ALA SEQRES 21 C 309 LEU VAL THR GLY LEU LEU GLN GLU MET PRO LEU GLU SER SEQRES 22 C 309 ALA ILE LYS PHE ALA HIS ALA ALA ALA ALA ILE SER VAL SEQRES 23 C 309 THR ARG PHE GLY ALA GLN THR SER ILE PRO THR ARG ALA SEQRES 24 C 309 GLU VAL GLU ALA PHE LEU ALA GLU HIS SER SEQRES 1 D 309 GLY SER HIS MET ASN LYS LEU VAL VAL LEU GLY SER VAL SEQRES 2 D 309 ASN ALA ASP HIS VAL LEU GLN VAL PRO SER PHE PRO ARG SEQRES 3 D 309 PRO GLY GLU THR LEU HIS GLY ARG ASN TYR GLN VAL ILE SEQRES 4 D 309 PRO GLY GLY LYS GLY ALA ASN GLN ALA VAL ALA ALA ALA SEQRES 5 D 309 ARG MET GLN ALA ASP VAL GLY PHE ILE ALA CYS VAL GLY SEQRES 6 D 309 ASP ASP SER PHE GLY ILE ASN ILE ARG GLU SER PHE LYS SEQRES 7 D 309 LEU ASP GLY ILE ASN THR ALA GLY VAL LYS LEU GLN PRO SEQRES 8 D 309 ASN CYS PRO THR GLY ILE ALA MET ILE GLN VAL SER ASP SEQRES 9 D 309 SER GLY GLU ASN SER ILE CYS ILE SER ALA GLU ALA ASN SEQRES 10 D 309 ALA LYS LEU THR ALA ALA ALA ILE GLU PRO ASP LEU ALA SEQRES 11 D 309 ALA ILE ARG ASP ALA ARG TYR LEU LEU MET GLN LEU GLU SEQRES 12 D 309 THR PRO LEU ASP GLY ILE LEU LYS ALA ALA GLN GLU ALA SEQRES 13 D 309 LYS THR ALA LYS THR ASN VAL ILE LEU ASN PRO ALA PRO SEQRES 14 D 309 ALA ARG GLU LEU PRO ASP GLU LEU LEU LYS CYS VAL ASP SEQRES 15 D 309 LEU ILE THR PRO ASN GLU THR GLU ALA GLU VAL LEU THR SEQRES 16 D 309 GLY ILE THR VAL TYR ASP ASP SER SER ALA GLN GLN ALA SEQRES 17 D 309 ALA ASP ALA LEU HIS CYS LYS GLY ILE GLU ILE VAL ILE SEQRES 18 D 309 ILE THR LEU GLY SER LYS GLY VAL TRP LEU SER GLN ASN SEQRES 19 D 309 GLY ARG GLY GLN ARG ILE PRO GLY PHE VAL VAL LYS ALA SEQRES 20 D 309 THR ASP THR THR ALA ALA GLY ASP THR PHE ASN GLY ALA SEQRES 21 D 309 LEU VAL THR GLY LEU LEU GLN GLU MET PRO LEU GLU SER SEQRES 22 D 309 ALA ILE LYS PHE ALA HIS ALA ALA ALA ALA ILE SER VAL SEQRES 23 D 309 THR ARG PHE GLY ALA GLN THR SER ILE PRO THR ARG ALA SEQRES 24 D 309 GLU VAL GLU ALA PHE LEU ALA GLU HIS SER HET RIB A 401 10 HET ADP A 402 27 HET NA A 403 1 HET ADP B 401 27 HET ADP B 402 27 HET NA B 403 1 HET RIB C 401 10 HET ADP C 402 27 HET NA C 403 1 HET RIB D 401 10 HET ADP D 402 27 HET NA D 403 1 HETNAM RIB ALPHA-D-RIBOFURANOSE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NA SODIUM ION HETSYN RIB ALPHA-D-RIBOSE; D-RIBOSE; RIBOSE FORMUL 5 RIB 3(C5 H10 O5) FORMUL 6 ADP 5(C10 H15 N5 O10 P2) FORMUL 7 NA 4(NA 1+) FORMUL 17 HOH *1168(H2 O) HELIX 1 AA1 GLY A 39 MET A 51 1 13 HELIX 2 AA2 ASP A 64 ASP A 77 1 14 HELIX 3 AA3 ALA A 111 LEU A 117 5 7 HELIX 4 AA4 ILE A 122 PRO A 124 5 3 HELIX 5 AA5 ASP A 125 ALA A 132 1 8 HELIX 6 AA6 PRO A 142 LYS A 154 1 13 HELIX 7 AA7 PRO A 171 LYS A 176 1 6 HELIX 8 AA8 ASN A 184 GLY A 193 1 10 HELIX 9 AA9 ASP A 198 LYS A 212 1 15 HELIX 10 AB1 GLY A 222 LYS A 224 5 3 HELIX 11 AB2 ALA A 249 GLN A 264 1 16 HELIX 12 AB3 PRO A 267 THR A 284 1 18 HELIX 13 AB4 ALA A 288 ILE A 292 5 5 HELIX 14 AB5 THR A 294 HIS A 305 1 12 HELIX 15 AB6 GLY B 39 MET B 51 1 13 HELIX 16 AB7 ASP B 64 ASP B 77 1 14 HELIX 17 AB8 GLU B 112 LEU B 117 5 6 HELIX 18 AB9 ILE B 122 PRO B 124 5 3 HELIX 19 AC1 ASP B 125 ALA B 132 1 8 HELIX 20 AC2 PRO B 142 ALA B 156 1 15 HELIX 21 AC3 PRO B 171 LYS B 176 1 6 HELIX 22 AC4 ASN B 184 GLY B 193 1 10 HELIX 23 AC5 ASP B 198 CYS B 211 1 14 HELIX 24 AC6 GLY B 222 LYS B 224 5 3 HELIX 25 AC7 ALA B 249 GLN B 264 1 16 HELIX 26 AC8 PRO B 267 THR B 284 1 18 HELIX 27 AC9 ALA B 288 ILE B 292 5 5 HELIX 28 AD1 THR B 294 HIS B 305 1 12 HELIX 29 AD2 GLY C 39 MET C 51 1 13 HELIX 30 AD3 ASP C 64 ASP C 77 1 14 HELIX 31 AD4 ALA C 111 LEU C 117 5 7 HELIX 32 AD5 ILE C 122 PRO C 124 5 3 HELIX 33 AD6 ASP C 125 ALA C 132 1 8 HELIX 34 AD7 PRO C 142 THR C 155 1 14 HELIX 35 AD8 PRO C 171 LYS C 176 1 6 HELIX 36 AD9 ASN C 184 GLY C 193 1 10 HELIX 37 AE1 ASP C 198 CYS C 211 1 14 HELIX 38 AE2 GLY C 222 LYS C 224 5 3 HELIX 39 AE3 ALA C 249 GLN C 264 1 16 HELIX 40 AE4 PRO C 267 THR C 284 1 18 HELIX 41 AE5 ALA C 288 ILE C 292 5 5 HELIX 42 AE6 THR C 294 HIS C 305 1 12 HELIX 43 AE7 GLY D 39 MET D 51 1 13 HELIX 44 AE8 ASP D 64 GLY D 78 1 15 HELIX 45 AE9 ALA D 111 LEU D 117 5 7 HELIX 46 AF1 ALA D 119 PRO D 124 5 6 HELIX 47 AF2 ASP D 125 ALA D 132 1 8 HELIX 48 AF3 PRO D 142 ALA D 156 1 15 HELIX 49 AF4 PRO D 171 LYS D 176 1 6 HELIX 50 AF5 ASN D 184 GLY D 193 1 10 HELIX 51 AF6 ASP D 198 LYS D 212 1 15 HELIX 52 AF7 GLY D 222 LYS D 224 5 3 HELIX 53 AF8 ALA D 249 GLN D 264 1 16 HELIX 54 AF9 PRO D 267 ARG D 285 1 19 HELIX 55 AG1 ALA D 288 ILE D 292 5 5 HELIX 56 AG2 THR D 294 HIS D 305 1 12 SHEET 1 AA1 9 ASN A 80 GLN A 87 0 SHEET 2 AA1 9 VAL A 55 GLY A 62 1 N ALA A 59 O LYS A 85 SHEET 3 AA1 9 LEU A 4 LEU A 7 1 N VAL A 6 O GLY A 56 SHEET 4 AA1 9 TYR A 134 MET A 137 1 O LEU A 136 N VAL A 5 SHEET 5 AA1 9 ASN A 159 LEU A 162 1 O ILE A 161 N LEU A 135 SHEET 6 AA1 9 LEU A 180 ILE A 181 1 O LEU A 180 N LEU A 162 SHEET 7 AA1 9 ILE A 216 THR A 220 1 O ILE A 218 N ILE A 181 SHEET 8 AA1 9 VAL A 226 GLN A 230 -1 O SER A 229 N VAL A 217 SHEET 9 AA1 9 ARG A 233 ILE A 237 -1 O GLN A 235 N LEU A 228 SHEET 1 AA2 9 LEU B 28 HIS B 29 0 SHEET 2 AA2 9 ASN A 105 SER A 110 1 N ILE A 107 O LEU B 28 SHEET 3 AA2 9 GLY A 93 SER A 100 -1 N MET A 96 O CYS A 108 SHEET 4 AA2 9 ASN A 11 VAL A 18 1 N HIS A 14 O ALA A 95 SHEET 5 AA2 9 LEU A 28 GLY A 38 -1 O ILE A 36 N ASP A 13 SHEET 6 AA2 9 SER B 106 SER B 110 1 O ILE B 107 N LEU A 28 SHEET 7 AA2 9 GLY B 93 SER B 100 -1 N MET B 96 O CYS B 108 SHEET 8 AA2 9 ASN B 11 VAL B 18 1 N HIS B 14 O ALA B 95 SHEET 9 AA2 9 ARG B 31 GLY B 38 -1 O GLY B 38 N ASN B 11 SHEET 1 AA3 9 ASN B 80 GLN B 87 0 SHEET 2 AA3 9 VAL B 55 GLY B 62 1 N VAL B 61 O LYS B 85 SHEET 3 AA3 9 LEU B 4 LEU B 7 1 N VAL B 6 O GLY B 56 SHEET 4 AA3 9 TYR B 134 MET B 137 1 O LEU B 136 N LEU B 7 SHEET 5 AA3 9 ASN B 159 LEU B 162 1 O ILE B 161 N LEU B 135 SHEET 6 AA3 9 LEU B 180 ILE B 181 1 O LEU B 180 N LEU B 162 SHEET 7 AA3 9 ILE B 216 THR B 220 1 O ILE B 218 N ILE B 181 SHEET 8 AA3 9 VAL B 226 GLN B 230 -1 O TRP B 227 N ILE B 219 SHEET 9 AA3 9 ARG B 233 ILE B 237 -1 O GLN B 235 N LEU B 228 SHEET 1 AA4 9 ASN C 80 GLN C 87 0 SHEET 2 AA4 9 VAL C 55 GLY C 62 1 N VAL C 61 O LYS C 85 SHEET 3 AA4 9 LEU C 4 LEU C 7 1 N VAL C 6 O ILE C 58 SHEET 4 AA4 9 TYR C 134 MET C 137 1 O LEU C 136 N VAL C 5 SHEET 5 AA4 9 ASN C 159 LEU C 162 1 O ASN C 159 N LEU C 135 SHEET 6 AA4 9 LEU C 180 ILE C 181 1 O LEU C 180 N LEU C 162 SHEET 7 AA4 9 ILE C 216 THR C 220 1 O ILE C 218 N ILE C 181 SHEET 8 AA4 9 VAL C 226 SER C 229 -1 O TRP C 227 N ILE C 219 SHEET 9 AA4 9 GLY C 234 ILE C 237 -1 O ILE C 237 N VAL C 226 SHEET 1 AA5 5 ARG C 31 GLY C 38 0 SHEET 2 AA5 5 ASN C 11 GLN C 17 -1 N ASP C 13 O ILE C 36 SHEET 3 AA5 5 GLY C 93 VAL C 99 1 O ALA C 95 N HIS C 14 SHEET 4 AA5 5 ASN C 105 SER C 110 -1 O CYS C 108 N MET C 96 SHEET 5 AA5 5 LEU D 28 HIS D 29 1 O LEU D 28 N ILE C 109 SHEET 1 AA6 5 THR C 27 HIS C 29 0 SHEET 2 AA6 5 ASN D 105 SER D 110 1 O ILE D 109 N LEU C 28 SHEET 3 AA6 5 GLY D 93 SER D 100 -1 N MET D 96 O CYS D 108 SHEET 4 AA6 5 ASN D 11 VAL D 18 1 N HIS D 14 O ALA D 95 SHEET 5 AA6 5 ARG D 31 GLY D 38 -1 O GLN D 34 N VAL D 15 SHEET 1 AA7 9 VAL D 84 GLN D 87 0 SHEET 2 AA7 9 VAL D 55 GLY D 62 1 N ALA D 59 O LYS D 85 SHEET 3 AA7 9 LEU D 4 LEU D 7 1 N VAL D 6 O ILE D 58 SHEET 4 AA7 9 TYR D 134 MET D 137 1 O TYR D 134 N VAL D 5 SHEET 5 AA7 9 ASN D 159 LEU D 162 1 O ILE D 161 N LEU D 135 SHEET 6 AA7 9 LEU D 180 ILE D 181 1 O LEU D 180 N LEU D 162 SHEET 7 AA7 9 ILE D 216 THR D 220 1 O ILE D 218 N ILE D 181 SHEET 8 AA7 9 VAL D 226 GLN D 230 -1 O SER D 229 N VAL D 217 SHEET 9 AA7 9 ARG D 233 ILE D 237 -1 O GLN D 235 N LEU D 228 LINK O ASP A 246 NA NA A 403 1555 1555 2.31 LINK O SER A 282 NA NA A 403 1555 1555 2.31 LINK O ARG A 285 NA NA A 403 1555 1555 2.17 LINK NA NA A 403 O HOH A 565 1555 1555 2.18 LINK NA NA A 403 O HOH A 568 1555 1555 2.33 LINK O ASP B 246 NA NA B 403 1555 1555 2.26 LINK O SER B 282 NA NA B 403 1555 1555 2.23 LINK O ARG B 285 NA NA B 403 1555 1555 2.17 LINK NA NA B 403 O HOH B 593 1555 1555 2.25 LINK NA NA B 403 O HOH B 633 1555 1555 2.42 LINK O ASP C 246 NA NA C 403 1555 1555 2.21 LINK O SER C 282 NA NA C 403 1555 1555 2.40 LINK O ARG C 285 NA NA C 403 1555 1555 2.25 LINK NA NA C 403 O HOH C 643 1555 1555 2.35 LINK NA NA C 403 O HOH C 687 1555 1555 2.32 LINK NA NA C 403 O HOH C 733 1555 1555 3.06 LINK O ASP D 246 NA NA D 403 1555 1555 2.44 LINK O SER D 282 NA NA D 403 1555 1555 2.26 LINK O ARG D 285 NA NA D 403 1555 1555 2.45 LINK O GLY D 287 NA NA D 403 1555 1555 2.45 LINK OG SER D 291 NA NA D 403 1555 1555 2.12 CISPEP 1 ALA A 165 PRO A 166 0 -4.75 CISPEP 2 ALA B 165 PRO B 166 0 -4.64 CISPEP 3 ALA C 165 PRO C 166 0 -1.63 CISPEP 4 ALA D 165 PRO D 166 0 -1.98 CRYST1 59.420 70.700 79.880 106.29 97.65 98.68 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016829 0.002569 0.003203 0.00000 SCALE2 0.000000 0.014308 0.004612 0.00000 SCALE3 0.000000 0.000000 0.013271 0.00000