HEADER OXIDOREDUCTASE 19-DEC-14 4XDG TITLE CRYSTAL STRUCTURE OF QUINONE REDUCTASE II IN COMPLEX WITH 2-(4- TITLE 2 AMINOPHENYL)-5-METHOXY-1-OXY-INDOL-3-ONE MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE [QUINONE]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NRH DEHYDROGENASE [QUINONE] 2,NRH:QUINONE OXIDOREDUCTASE 2, COMPND 5 QUINONE REDUCTASE 2,QR2; COMPND 6 EC: 1.10.99.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO2, NMOR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS QR2, FAD, FLAVOPROTEIN, METAL-BINDING, OXIDOREDUCTASE, INDOLONE OXIDE EXPDTA X-RAY DIFFRACTION AUTHOR S.SIRIGU,F.NEPVEU,L.VUILLARD,G.FERRY,T.ISABET,A.THOMPSON,J.A.BOUTIN REVDAT 4 08-MAY-24 4XDG 1 REMARK REVDAT 3 01-MAR-17 4XDG 1 JRNL REVDAT 2 20-JAN-16 4XDG 1 REVDAT 1 13-JAN-16 4XDG 0 JRNL AUTH L.E.CASSAGNES,N.RAKOTOARIVELO,S.SIRIGU,P.PERIO,E.NAJAHI, JRNL AUTH 2 L.M.CHAVAS,A.THOMPSON,R.GAYON,G.FERRY,J.A.BOUTIN,A.VALENTIN, JRNL AUTH 3 K.REYBIER,F.NEPVEU JRNL TITL ROLE OF QUINONE REDUCTASE 2 IN THE ANTIMALARIAL PROPERTIES JRNL TITL 2 OF INDOLONE-TYPE DERIVATIVES. JRNL REF MOLECULES V. 22 2017 JRNL REFN ESSN 1420-3049 JRNL PMID 28146103 JRNL DOI 10.3390/MOLECULES22020210 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4066 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5929 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2419 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5632 REMARK 3 BIN R VALUE (WORKING SET) : 0.2398 REMARK 3 BIN FREE R VALUE : 0.2835 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 297 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 163 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.46770 REMARK 3 B22 (A**2) : -1.02400 REMARK 3 B33 (A**2) : 3.49180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.217 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.069 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.068 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.066 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.065 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4007 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5474 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1327 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 89 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 697 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4007 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 499 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5333 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.18 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.6461 8.9615 4.2695 REMARK 3 T TENSOR REMARK 3 T11: -0.0014 T22: -0.1519 REMARK 3 T33: -0.1196 T12: 0.0299 REMARK 3 T13: 0.0264 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3209 L22: 0.4327 REMARK 3 L33: 3.8706 L12: -0.1422 REMARK 3 L13: -0.5527 L23: 0.6511 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.0551 S13: 0.0336 REMARK 3 S21: -0.1687 S22: -0.0126 S23: -0.0451 REMARK 3 S31: -0.5442 S32: -0.1290 S33: -0.0933 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.3985 7.7953 26.4392 REMARK 3 T TENSOR REMARK 3 T11: -0.0201 T22: -0.0728 REMARK 3 T33: -0.0553 T12: 0.0082 REMARK 3 T13: 0.0131 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.2316 L22: 0.9224 REMARK 3 L33: 1.9025 L12: -0.0586 REMARK 3 L13: -0.1116 L23: 0.4002 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0496 S13: -0.0081 REMARK 3 S21: -0.0084 S22: 0.0268 S23: 0.0084 REMARK 3 S31: -0.1659 S32: 0.0152 S33: -0.0509 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : CHANEL CUT SI III REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.310 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.00900 REMARK 200 FOR THE DATA SET : 12.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.14 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULPHATE; 100 MM HEPES REMARK 280 PH7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 132 -104.84 56.05 REMARK 500 TYR A 132 -118.83 59.08 REMARK 500 TYR A 155 45.46 -92.83 REMARK 500 TYR B 132 -121.76 55.24 REMARK 500 TYR B 155 53.59 -92.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 697 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 ND1 REMARK 620 2 HIS A 177 ND1 106.9 REMARK 620 3 CYS A 222 O 106.3 96.8 REMARK 620 4 CYS A 222 SG 127.7 115.0 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 173 ND1 REMARK 620 2 HIS B 177 ND1 107.6 REMARK 620 3 CYS B 222 O 106.5 97.5 REMARK 620 4 CYS B 222 SG 127.8 114.6 97.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3ZU A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3ZU B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 303 DBREF 4XDG A 0 230 UNP P16083 NQO2_HUMAN 1 231 DBREF 4XDG B 0 230 UNP P16083 NQO2_HUMAN 1 231 SEQADV 4XDG PHE A 46 UNP P16083 LEU 47 CONFLICT SEQADV 4XDG PHE B 46 UNP P16083 LEU 47 CONFLICT SEQRES 1 A 231 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 A 231 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 A 231 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 A 231 SER ASP LEU TYR ALA MET ASN PHE GLU PRO ARG ALA THR SEQRES 5 A 231 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 A 231 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 A 231 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 A 231 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 A 231 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 A 231 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 A 231 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 A 231 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 A 231 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 A 231 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 A 231 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 A 231 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 A 231 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 A 231 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN SEQRES 1 B 231 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 B 231 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 B 231 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 B 231 SER ASP LEU TYR ALA MET ASN PHE GLU PRO ARG ALA THR SEQRES 5 B 231 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 B 231 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 B 231 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 B 231 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 B 231 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 B 231 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 B 231 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 B 231 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 B 231 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 B 231 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 B 231 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 B 231 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 B 231 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 B 231 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HET ZN A 301 1 HET FAD A 302 53 HET 3ZU A 303 20 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET ZN B 301 1 HET 3ZU B 302 20 HET FAD B 303 53 HETNAM ZN ZINC ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 3ZU (2S)-2-(4-AMINOPHENYL)-1-HYDROXY-5-METHOXY-1,2-DIHYDRO- HETNAM 2 3ZU 3H-INDOL-3-ONE HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 3ZU 2(C15 H12 N2 O3) FORMUL 6 SO4 3(O4 S 2-) FORMUL 12 HOH *524(H2 O) HELIX 1 AA1 SER A 16 GLN A 32 1 17 HELIX 2 AA2 THR A 51 ILE A 55 5 5 HELIX 3 AA3 ASN A 66 GLN A 77 1 12 HELIX 4 AA4 ALA A 81 ALA A 94 1 14 HELIX 5 AA5 PRO A 109 LEU A 120 1 12 HELIX 6 AA6 PHE A 131 GLY A 135 5 5 HELIX 7 AA7 ASP A 163 HIS A 173 1 11 HELIX 8 AA8 SER A 196 THR A 213 1 18 HELIX 9 AA9 ILE A 214 GLU A 217 5 4 HELIX 10 AB1 THR A 223 GLY A 229 1 7 HELIX 11 AB2 SER B 16 GLN B 32 1 17 HELIX 12 AB3 THR B 51 ILE B 55 5 5 HELIX 13 AB4 ASN B 66 ARG B 78 1 13 HELIX 14 AB5 ALA B 81 ALA B 94 1 14 HELIX 15 AB6 PRO B 109 LEU B 120 1 12 HELIX 16 AB7 PHE B 131 GLY B 135 5 5 HELIX 17 AB8 ASP B 163 HIS B 173 1 11 HELIX 18 AB9 SER B 196 THR B 213 1 18 HELIX 19 AC1 ILE B 214 GLU B 217 5 4 HELIX 20 AC2 THR B 223 GLY B 229 1 7 SHEET 1 AA1 5 THR A 35 ASP A 40 0 SHEET 2 AA1 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA1 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA1 5 LEU A 141 THR A 147 1 O SER A 145 N PHE A 99 SHEET 5 AA1 5 LYS A 182 VAL A 183 1 O LYS A 182 N ALA A 142 SHEET 1 AA2 5 THR A 35 ASP A 40 0 SHEET 2 AA2 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA2 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA2 5 LEU A 141 THR A 147 1 O SER A 145 N PHE A 99 SHEET 5 AA2 5 GLN A 187 SER A 189 1 O SER A 189 N VAL A 146 SHEET 1 AA3 5 THR B 35 ASP B 40 0 SHEET 2 AA3 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA3 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA3 5 LEU B 141 THR B 147 1 O SER B 145 N PHE B 99 SHEET 5 AA3 5 LYS B 182 VAL B 183 1 O LYS B 182 N ALA B 142 SHEET 1 AA4 5 THR B 35 ASP B 40 0 SHEET 2 AA4 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA4 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA4 5 LEU B 141 THR B 147 1 O SER B 145 N PHE B 99 SHEET 5 AA4 5 GLN B 187 SER B 189 1 O SER B 189 N VAL B 146 LINK ND1 HIS A 173 ZN ZN A 301 1555 1555 2.00 LINK ND1 HIS A 177 ZN ZN A 301 1555 1555 2.07 LINK O CYS A 222 ZN ZN A 301 1555 1555 2.06 LINK SG CYS A 222 ZN ZN A 301 1555 1555 2.25 LINK ND1 HIS B 173 ZN ZN B 301 1555 1555 2.00 LINK ND1 HIS B 177 ZN ZN B 301 1555 1555 2.06 LINK O CYS B 222 ZN ZN B 301 1555 1555 2.05 LINK SG CYS B 222 ZN ZN B 301 1555 1555 2.27 CISPEP 1 ILE A 128 PRO A 129 0 -5.75 CISPEP 2 ILE A 128 PRO A 129 0 5.04 CISPEP 3 ILE B 128 PRO B 129 0 3.61 SITE 1 AC1 3 HIS A 173 HIS A 177 CYS A 222 SITE 1 AC2 29 HIS A 11 LYS A 15 SER A 16 PHE A 17 SITE 2 AC2 29 ASN A 18 SER A 20 PRO A 102 LEU A 103 SITE 3 AC2 29 TYR A 104 TRP A 105 PHE A 106 THR A 147 SITE 4 AC2 29 THR A 148 GLY A 149 GLY A 150 TYR A 155 SITE 5 AC2 29 GLU A 193 GLU A 197 ARG A 200 3ZU A 303 SITE 6 AC2 29 HOH A 496 HOH A 500 HOH A 501 HOH A 509 SITE 7 AC2 29 HOH A 527 HOH A 556 ASN B 66 ASP B 117 SITE 8 AC2 29 HOH B 569 SITE 1 AC3 9 TRP A 105 GLY A 149 MET A 154 ILE A 194 SITE 2 AC3 9 FAD A 302 HOH A 607 PHE B 126 ILE B 128 SITE 3 AC3 9 PHE B 178 SITE 1 AC4 3 MET A 154 GLY A 159 VAL A 160 SITE 1 AC5 4 ARG A 78 GLU A 197 ARG A 200 HOH A 445 SITE 1 AC6 8 GLU A 47 LYS A 53 ASP A 54 ALA A 81 SITE 2 AC6 8 ASP A 83 ARG A 118 HOH A 428 HOH A 544 SITE 1 AC7 3 HIS B 173 HIS B 177 CYS B 222 SITE 1 AC8 10 PHE A 126 ILE A 128 PHE A 178 TRP B 105 SITE 2 AC8 10 GLY B 149 MET B 154 ILE B 194 FAD B 303 SITE 3 AC8 10 HOH B 417 HOH B 500 SITE 1 AC9 29 ASN A 66 ASP A 117 HIS B 11 LYS B 15 SITE 2 AC9 29 SER B 16 PHE B 17 ASN B 18 SER B 20 SITE 3 AC9 29 PRO B 102 LEU B 103 TYR B 104 TRP B 105 SITE 4 AC9 29 PHE B 106 THR B 147 THR B 148 GLY B 149 SITE 5 AC9 29 GLY B 150 TYR B 155 GLU B 193 GLU B 197 SITE 6 AC9 29 ARG B 200 3ZU B 302 HOH B 424 HOH B 431 SITE 7 AC9 29 HOH B 448 HOH B 454 HOH B 495 HOH B 527 SITE 8 AC9 29 HOH B 563 CRYST1 56.480 83.630 106.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009401 0.00000