HEADER HYDROLASE 24-DEC-14 4XEP TITLE CRYSTAL STRUCTURE OF F222 FORM OF E112A/H234A MUTANT OF STATIONARY TITLE 2 PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'/3'-NUCLEOTIDASE SURE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXOPOLYPHOSPHATASE,NUCLEOSIDE MONOPHOSPHATE COMPND 5 PHOSPHOHYDROLASE; COMPND 6 EC: 3.1.3.5,3.1.3.6,3.6.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: SURE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETC KEYWDS STATIONARY PHASE SURVIVAL PROTEIN, DOMAIN SWAPPING, ROSSMANN FOLD KEYWDS 2 LIKE, PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.K.MATHIHARAN,M.R.N.MURTHY REVDAT 3 08-NOV-23 4XEP 1 LINK REVDAT 2 18-DEC-19 4XEP 1 JRNL REMARK REVDAT 1 09-SEP-15 4XEP 0 JRNL AUTH Y.K.MATHIHARAN,H.S.SAVITHRI,M.R.MURTHY JRNL TITL INSIGHTS INTO STABILIZING INTERACTIONS IN THE DISTORTED JRNL TITL 2 DOMAIN-SWAPPED DIMER OF SALMONELLA TYPHIMURIUM SURVIVAL JRNL TITL 3 PROTEIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1812 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26327371 JRNL DOI 10.1107/S1399004715011992 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 46518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1875 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2227 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3083 ; 1.887 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 6.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;33.434 ;24.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;13.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1766 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6080 -20.1000 15.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.0076 REMARK 3 T33: 0.0694 T12: -0.0240 REMARK 3 T13: 0.0416 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.5693 L22: 1.1433 REMARK 3 L33: 0.6396 L12: 0.2047 REMARK 3 L13: -0.2457 L23: -0.3734 REMARK 3 S TENSOR REMARK 3 S11: 0.1136 S12: -0.0524 S13: 0.1137 REMARK 3 S21: 0.1792 S22: -0.0377 S23: 0.0621 REMARK 3 S31: -0.2074 S32: 0.0542 S33: -0.0760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4XEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49090 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 68.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V4N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.02 M MGCL2 REMARK 280 HEXAHYDRATE, 22% (W/V) POLYACRYLIC ACID 5100 SODIUM SALT, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.82650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.70050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.82650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.70050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.82650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.70050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.82650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.70050 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.70050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 71.70050 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.70050 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.70050 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.82650 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.82650 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 60.82650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 36.72750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 60.82650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -36.72750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -60.82650 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 420 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 558 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CE NZ REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 154 CZ NH1 NH2 REMARK 470 LYS A 184 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 59 O - C - N ANGL. DEV. = -22.1 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -167.81 -165.52 REMARK 500 PHE A 26 -7.69 -141.85 REMARK 500 SER A 42 -143.00 52.16 REMARK 500 ASP A 60 118.43 -32.60 REMARK 500 MET A 65 14.59 51.55 REMARK 500 ALA A 78 -50.22 -132.53 REMARK 500 GLN A 129 -65.83 -90.99 REMARK 500 PRO A 210 -75.88 -20.94 REMARK 500 ASP A 211 31.77 -99.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 59 25.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 667 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 668 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASP A 8 OD2 53.1 REMARK 620 3 ASP A 9 OD1 77.4 66.8 REMARK 620 4 ASP A 9 OD1 98.5 91.5 25.9 REMARK 620 5 SER A 39 OG 65.6 116.5 86.3 81.4 REMARK 620 6 ASN A 92 OD1 121.0 68.9 90.4 92.3 171.7 REMARK 620 7 HOH A 572 O 114.0 134.6 158.6 133.4 82.6 98.0 REMARK 620 8 HOH A 573 O 150.3 142.6 88.4 62.9 87.8 84.5 72.9 REMARK 620 9 HOH A 738 O 82.9 85.3 151.8 174.8 103.7 82.7 49.4 117.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GAD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF D230A/H234A MUTANT OF STATIONARY PHASE REMARK 900 SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 4G9O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H234A MUTANT OF STATIONARY PHASE SURVIVAL REMARK 900 PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 4RYT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF F222 FORM OF E112A MUTANT OF STATIONARY PHASE REMARK 900 SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 4RYU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C2 FORM OF E112A MUTANT OF STATIONARY PHASE REMARK 900 SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 4XER RELATED DB: PDB REMARK 900 RELATED ID: 4XGB RELATED DB: PDB REMARK 900 RELATED ID: 4XGP RELATED DB: PDB DBREF 4XEP A 1 253 UNP P66881 SURE_SALTY 1 253 SEQADV 4XEP MET A -13 UNP P66881 EXPRESSION TAG SEQADV 4XEP ARG A -12 UNP P66881 EXPRESSION TAG SEQADV 4XEP GLY A -11 UNP P66881 EXPRESSION TAG SEQADV 4XEP SER A -10 UNP P66881 EXPRESSION TAG SEQADV 4XEP HIS A -9 UNP P66881 EXPRESSION TAG SEQADV 4XEP HIS A -8 UNP P66881 EXPRESSION TAG SEQADV 4XEP HIS A -7 UNP P66881 EXPRESSION TAG SEQADV 4XEP HIS A -6 UNP P66881 EXPRESSION TAG SEQADV 4XEP HIS A -5 UNP P66881 EXPRESSION TAG SEQADV 4XEP HIS A -4 UNP P66881 EXPRESSION TAG SEQADV 4XEP GLY A -3 UNP P66881 EXPRESSION TAG SEQADV 4XEP MET A -2 UNP P66881 EXPRESSION TAG SEQADV 4XEP ALA A -1 UNP P66881 EXPRESSION TAG SEQADV 4XEP SER A 0 UNP P66881 EXPRESSION TAG SEQADV 4XEP ALA A 112 UNP P66881 GLU 112 ENGINEERED MUTATION SEQADV 4XEP ALA A 234 UNP P66881 HIS 234 ENGINEERED MUTATION SEQRES 1 A 267 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 267 SER MET ARG ILE LEU LEU SER ASN ASP ASP GLY VAL HIS SEQRES 3 A 267 ALA PRO GLY ILE GLN THR LEU ALA LYS ALA LEU ARG GLU SEQRES 4 A 267 PHE ALA ASP VAL GLN VAL VAL ALA PRO ASP ARG ASN ARG SEQRES 5 A 267 SER GLY ALA SER ASN SER LEU THR LEU GLU SER SER LEU SEQRES 6 A 267 ARG THR PHE THR PHE ASP ASN GLY ASP ILE ALA VAL GLN SEQRES 7 A 267 MET GLY THR PRO THR ASP CYS VAL TYR LEU GLY VAL ASN SEQRES 8 A 267 ALA LEU MET ARG PRO ARG PRO ASP ILE VAL VAL SER GLY SEQRES 9 A 267 ILE ASN ALA GLY PRO ASN LEU GLY ASP ASP VAL ILE TYR SEQRES 10 A 267 SER GLY THR VAL ALA ALA ALA MET ALA GLY ARG HIS LEU SEQRES 11 A 267 GLY PHE PRO ALA LEU ALA VAL SER LEU ASN GLY TYR GLN SEQRES 12 A 267 HIS TYR ASP THR ALA ALA ALA VAL THR CYS ALA LEU LEU SEQRES 13 A 267 ARG GLY LEU SER ARG GLU PRO LEU ARG THR GLY ARG ILE SEQRES 14 A 267 LEU ASN VAL ASN VAL PRO ASP LEU PRO LEU ALA GLN VAL SEQRES 15 A 267 LYS GLY ILE ARG VAL THR ARG CYS GLY SER ARG HIS PRO SEQRES 16 A 267 ALA ASP LYS VAL ILE PRO GLN GLU ASP PRO ARG GLY ASN SEQRES 17 A 267 THR LEU TYR TRP ILE GLY PRO PRO GLY ASP LYS TYR ASP SEQRES 18 A 267 ALA GLY PRO ASP THR ASP PHE ALA ALA VAL ASP GLU GLY SEQRES 19 A 267 TYR VAL SER VAL THR PRO LEU HIS VAL ASP LEU THR ALA SEQRES 20 A 267 ALA SER ALA HIS ASP VAL VAL SER ASP TRP LEU ASP SER SEQRES 21 A 267 VAL GLY VAL GLY THR GLN TRP HET MG A 301 1 HET PO4 A 302 5 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *353(H2 O) HELIX 1 AA1 ALA A 13 GLU A 25 1 13 HELIX 2 AA2 THR A 67 ALA A 78 1 12 HELIX 3 AA3 LEU A 97 TYR A 103 5 7 HELIX 4 AA4 SER A 104 ALA A 112 1 9 HELIX 5 AA5 HIS A 130 GLU A 148 1 19 HELIX 6 AA6 PRO A 164 VAL A 168 5 5 HELIX 7 AA7 THR A 212 GLU A 219 1 8 HELIX 8 AA8 ALA A 233 SER A 235 5 3 HELIX 9 AA9 ALA A 236 GLY A 248 1 13 SHEET 1 AA1 9 THR A 53 THR A 55 0 SHEET 2 AA1 9 ILE A 61 VAL A 63 -1 O ALA A 62 N PHE A 54 SHEET 3 AA1 9 ASP A 28 PRO A 34 1 N ALA A 33 O ILE A 61 SHEET 4 AA1 9 ARG A 2 SER A 6 1 N ILE A 3 O ASP A 28 SHEET 5 AA1 9 ILE A 86 ALA A 93 1 O VAL A 88 N SER A 6 SHEET 6 AA1 9 ALA A 120 LEU A 125 1 O VAL A 123 N SER A 89 SHEET 7 AA1 9 ILE A 155 VAL A 160 1 O VAL A 158 N ALA A 122 SHEET 8 AA1 9 VAL A 222 LEU A 227 -1 O THR A 225 N ASN A 157 SHEET 9 AA1 9 ILE A 171 VAL A 173 1 N ARG A 172 O VAL A 222 SHEET 1 AA2 2 SER A 178 ARG A 179 0 SHEET 2 AA2 2 LYS A 205 ASP A 207 -1 O TYR A 206 N SER A 178 SHEET 1 AA3 2 VAL A 185 GLU A 189 0 SHEET 2 AA3 2 THR A 195 ILE A 199 -1 O LEU A 196 N GLN A 188 LINK OD2AASP A 8 MG MG A 301 1555 1555 2.50 LINK OD2BASP A 8 MG MG A 301 1555 1555 2.48 LINK OD1AASP A 9 MG MG A 301 1555 1555 2.73 LINK OD1BASP A 9 MG MG A 301 1555 1555 2.35 LINK OG BSER A 39 MG MG A 301 1555 1555 2.46 LINK OD1 ASN A 92 MG MG A 301 1555 1555 2.41 LINK MG MG A 301 O HOH A 572 1555 1555 2.55 LINK MG MG A 301 O HOH A 573 1555 1555 2.71 LINK MG MG A 301 O HOH A 738 1555 1555 2.95 CISPEP 1 ARG A 81 PRO A 82 0 -13.87 CISPEP 2 GLY A 90 ILE A 91 0 -11.34 SITE 1 AC1 7 ASP A 8 ASP A 9 SER A 39 ASN A 92 SITE 2 AC1 7 HOH A 572 HOH A 573 HOH A 738 SITE 1 AC2 5 PRO A 95 ASN A 96 ASP A 100 HOH A 738 SITE 2 AC2 5 HOH A 743 SITE 1 AC3 4 VAL A 76 ASN A 77 MET A 80 ARG A 83 SITE 1 AC4 4 LEU A 97 LYS A 205 PHE A 214 ASP A 218 SITE 1 AC5 6 LYS A 169 ARG A 172 GLU A 219 TYR A 221 SITE 2 AC5 6 HOH A 459 HOH A 485 SITE 1 AC6 5 GLY A 200 PRO A 202 HOH A 582 HOH A 730 SITE 2 AC6 5 HOH A 752 CRYST1 73.455 121.653 143.401 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006973 0.00000