HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-DEC-14 4XFM TITLE CRYSTAL STRUCTURE OF A DOMAIN OF UNKNOWN FUNCTION (DUF1537) FROM TITLE 2 PECTOBACTERIUM ATROSEPTICUM (ECA3761), TARGET EFI-511609, WITH BOUND TITLE 3 D-THREONATE, DOMAIN SWAPPED DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM; SOURCE 3 ORGANISM_TAXID: 218491; SOURCE 4 STRAIN: SCRI 1043 / ATCC BAA-672; SOURCE 5 GENE: ECA3761; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH,S.R.WASSERMAN, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 6 27-SEP-23 4XFM 1 JRNL REMARK REVDAT 5 10-AUG-16 4XFM 1 JRNL REVDAT 4 27-JUL-16 4XFM 1 JRNL REVDAT 3 13-JUL-16 4XFM 1 JRNL REVDAT 2 30-SEP-15 4XFM 1 REMARK REVDAT 1 01-APR-15 4XFM 0 JRNL AUTH X.ZHANG,M.S.CARTER,M.W.VETTING,B.SAN FRANCISCO,S.ZHAO, JRNL AUTH 2 N.F.AL-OBAIDI,J.O.SOLBIATI,J.J.THIAVILLE,V.DE CRECY-LAGARD, JRNL AUTH 3 M.P.JACOBSON,S.C.ALMO,J.A.GERLT JRNL TITL ASSIGNMENT OF FUNCTION TO A DOMAIN OF UNKNOWN FUNCTION: JRNL TITL 2 DUF1537 IS A NEW KINASE FAMILY IN CATABOLIC PATHWAYS FOR JRNL TITL 3 ACID SUGARS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E4161 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27402745 JRNL DOI 10.1073/PNAS.1605546113 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 63973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9233 - 4.4026 0.91 2554 120 0.1810 0.1955 REMARK 3 2 4.4026 - 3.4966 0.99 2696 136 0.1496 0.1655 REMARK 3 3 3.4966 - 3.0552 1.00 2681 144 0.1595 0.1659 REMARK 3 4 3.0552 - 2.7762 1.00 2648 153 0.1526 0.1963 REMARK 3 5 2.7762 - 2.5773 1.00 2677 133 0.1560 0.1798 REMARK 3 6 2.5773 - 2.4255 1.00 2651 179 0.1521 0.1975 REMARK 3 7 2.4255 - 2.3041 1.00 2653 151 0.1453 0.1887 REMARK 3 8 2.3041 - 2.2038 0.99 2672 118 0.1536 0.2069 REMARK 3 9 2.2038 - 2.1190 1.00 2651 151 0.1581 0.2086 REMARK 3 10 2.1190 - 2.0459 0.99 2603 149 0.1581 0.1718 REMARK 3 11 2.0459 - 1.9819 1.00 2650 137 0.1614 0.1736 REMARK 3 12 1.9819 - 1.9253 1.00 2666 146 0.1632 0.1771 REMARK 3 13 1.9253 - 1.8746 0.99 2599 164 0.1720 0.2059 REMARK 3 14 1.8746 - 1.8289 1.00 2619 132 0.1705 0.1913 REMARK 3 15 1.8289 - 1.7873 0.99 2640 138 0.1651 0.1869 REMARK 3 16 1.7873 - 1.7493 0.99 2641 146 0.1803 0.2211 REMARK 3 17 1.7493 - 1.7143 1.00 2641 140 0.1878 0.2448 REMARK 3 18 1.7143 - 1.6820 0.99 2643 134 0.1950 0.2676 REMARK 3 19 1.6820 - 1.6519 1.00 2623 139 0.1978 0.2200 REMARK 3 20 1.6519 - 1.6239 0.98 2637 132 0.2104 0.2613 REMARK 3 21 1.6239 - 1.5977 0.99 2592 139 0.2170 0.2696 REMARK 3 22 1.5977 - 1.5732 0.98 2639 130 0.2343 0.2640 REMARK 3 23 1.5732 - 1.5500 0.99 2650 136 0.2405 0.2751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3000 REMARK 3 ANGLE : 1.269 4087 REMARK 3 CHIRALITY : 0.071 507 REMARK 3 PLANARITY : 0.007 532 REMARK 3 DIHEDRAL : 12.772 1068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4619 8.2396 2.5311 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.1142 REMARK 3 T33: 0.0926 T12: -0.0109 REMARK 3 T13: -0.0065 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.8497 L22: 2.7387 REMARK 3 L33: 1.4014 L12: 0.3219 REMARK 3 L13: -0.0591 L23: 0.1507 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.0513 S13: -0.0648 REMARK 3 S21: -0.1428 S22: 0.0512 S23: 0.0190 REMARK 3 S31: -0.0159 S32: 0.0967 S33: -0.0190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.7309 20.8621 28.9056 REMARK 3 T TENSOR REMARK 3 T11: 0.3208 T22: 0.3175 REMARK 3 T33: 0.1778 T12: -0.0635 REMARK 3 T13: 0.0395 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.9274 L22: 1.9492 REMARK 3 L33: 2.1888 L12: 0.0421 REMARK 3 L13: -0.1844 L23: 0.4043 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.4331 S13: -0.0670 REMARK 3 S21: -0.4365 S22: 0.1080 S23: -0.1936 REMARK 3 S31: 0.0840 S32: 0.1709 S33: 0.0613 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 61.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XGJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (67.0 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM D-THREONATE); RESERVOIR (MCSG1(F1); 0.1 M REMARK 280 BIS-TRIS PH 6.5, 20%(W/V) PEG MME 5000); CRYOPROTECTION (80% REMARK 280 RESERVOIR, 20% ETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.84800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.80550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.84800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.80550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS UNDETERMINED, COULD BE MONOMER OR DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.81427 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.29989 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 HIS A 313A REMARK 465 ASN A 313B REMARK 465 GLU A 313C REMARK 465 ASN A 313D REMARK 465 GLN A 313E REMARK 465 ARG A 313F REMARK 465 PHE A 313G REMARK 465 GLU A 313H REMARK 465 ILE A 313I REMARK 465 ASP A 313J REMARK 465 ALA A 313K REMARK 465 ARG A 313L REMARK 465 CYS A 313M REMARK 465 ARG A 313N REMARK 465 GLU A 313O REMARK 465 LEU A 313P REMARK 465 GLY A 313Q REMARK 465 LEU A 313R REMARK 465 SER A 313S REMARK 465 ARG A 313T REMARK 465 ASP A 356 REMARK 465 SER A 357 REMARK 465 LEU A 358 REMARK 465 ALA A 359 REMARK 465 ALA A 360 REMARK 465 ASP A 361 REMARK 465 GLY A 362 REMARK 465 THR A 363 REMARK 465 ARG A 364 REMARK 465 ARG A 365 REMARK 465 ARG A 366 REMARK 465 VAL A 440 REMARK 465 SER A 441 REMARK 465 GLU A 442 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 439 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 601 O HOH A 959 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 138 O GLY A 387 2646 1.47 REMARK 500 O HOH A 648 O HOH A 705 2656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 50.61 39.51 REMARK 500 SER A 147 68.46 -114.04 REMARK 500 ASP A 148 -143.04 50.41 REMARK 500 SER A 227 -153.16 -115.00 REMARK 500 CYS A 400 11.66 -154.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 867 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 950 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 966 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 5.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THE A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511609 RELATED DB: TARGETTRACK DBREF 4XFM A 1 442 UNP Q6D0N7 Q6D0N7_PECAS 1 442 SEQADV 4XFM MET A -21 UNP Q6D0N7 INITIATING METHIONINE SEQADV 4XFM HIS A -20 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM HIS A -19 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM HIS A -18 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM HIS A -17 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM HIS A -16 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM HIS A -15 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM SER A -14 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM SER A -13 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM GLY A -12 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM VAL A -11 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM ASP A -10 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM LEU A -9 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM GLY A -8 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM THR A -7 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM GLU A -6 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM ASN A -5 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM LEU A -4 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM TYR A -3 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM PHE A -2 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM GLN A -1 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XFM SER A 0 UNP Q6D0N7 EXPRESSION TAG SEQRES 1 A 464 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 464 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ASN VAL SEQRES 3 A 464 GLN GLN SER ALA GLY GLN VAL LEU VAL VAL ALA ASP ASP SEQRES 4 A 464 PHE THR GLY ALA ASN ASP ALA GLY VAL GLY LEU ALA GLN SEQRES 5 A 464 HIS GLY ALA ARG VAL SER VAL VAL PHE ASP VAL ASN THR SEQRES 6 A 464 LEU HIS ALA ASP LEU LEU GLY ASP ALA VAL VAL ILE ASN SEQRES 7 A 464 THR ASP SER ARG ALA ALA ARG ASP ASP VAL ALA SER GLN SEQRES 8 A 464 ARG THR ALA ALA ALA VAL ALA ALA TRP GLN ALA VAL GLY SEQRES 9 A 464 GLY LYS GLY TRP ILE ILE LYS LYS ILE ASP SER THR LEU SEQRES 10 A 464 ARG GLY ASN LEU GLY ALA GLU VAL ALA ALA ALA LEU SER SEQRES 11 A 464 ALA ALA ASP VAL PRO VAL ALA LEU ILE ALA ALA ALA SER SEQRES 12 A 464 PRO THR LEU GLY ARG VAL THR ARG GLN GLY GLU VAL TRP SEQRES 13 A 464 VAL ASN GLY ARG ARG LEU THR ASP THR GLU PHE ALA SER SEQRES 14 A 464 ASP PRO LYS THR PRO VAL THR SER ALA SER ILE ALA ALA SEQRES 15 A 464 ARG LEU ALA GLU GLN THR ALA LEU PRO VAL ALA GLU ILE SEQRES 16 A 464 HIS LEU ASP GLU VAL ARG GLN ALA ASN LEU ALA HIS ARG SEQRES 17 A 464 LEU GLN GLN LEU ALA ASP GLU GLY THR ARG LEU ILE ILE SEQRES 18 A 464 LEU ASP THR ASP VAL GLN ASP ASP LEU THR HIS ILE VAL SEQRES 19 A 464 ASN ALA ALA ARG ALA LEU PRO PHE ARG PRO LEU LEU VAL SEQRES 20 A 464 GLY SER ALA GLY LEU SER ASP ALA LEU ALA THR ALA GLN SEQRES 21 A 464 ASP PHE THR ARG LYS THR GLU LYS PRO LEU LEU ALA VAL SEQRES 22 A 464 VAL GLY SER MET SER ASP ILE ALA GLN LYS GLN ILE ALA SEQRES 23 A 464 ALA ALA ARG LEU ARG SER ASP VAL THR LEU VAL GLU ILE SEQRES 24 A 464 ASP ILE ASN ALA LEU PHE SER PRO ASP SER SER THR VAL SEQRES 25 A 464 MET ALA SER GLN CYS GLU ASP ALA LEU LYS ALA LEU THR SEQRES 26 A 464 ASN GLY HIS HIS CYS ILE ILE ARG THR CYS HIS ASN GLU SEQRES 27 A 464 ASN GLN ARG PHE GLU ILE ASP ALA ARG CYS ARG GLU LEU SEQRES 28 A 464 GLY LEU SER ARG GLN GLN LEU GLY GLU THR ILE SER HIS SEQRES 29 A 464 TYR LEU GLY GLU LEU THR ARG SER ILE VAL GLN ALA LEU SEQRES 30 A 464 ASP SER LEU ALA ALA ASP GLY THR ARG ARG ARG LEU PRO SEQRES 31 A 464 GLY GLY LEU TYR LEU SER GLY GLY ASP ILE ALA ILE ALA SEQRES 32 A 464 VAL ALA THR ALA LEU GLY ALA THR GLY PHE GLN ILE LYS SEQRES 33 A 464 GLY GLN ILE ALA SER CYS VAL PRO TRP GLY TYR LEU LEU SEQRES 34 A 464 ASN SER ILE VAL GLY MET THR PRO VAL MET THR LYS ALA SEQRES 35 A 464 GLY GLY PHE GLY ASN GLU THR THR LEU LEU ASP VAL LEU SEQRES 36 A 464 ARG PHE ILE GLU GLU LYS VAL SER GLU HET THE A 501 9 HETNAM THE THREONATE ION FORMUL 2 THE C4 H7 O5 1- FORMUL 3 HOH *406(H2 O) HELIX 1 AA1 ASP A 17 HIS A 31 1 15 HELIX 2 AA2 ASP A 40 LEU A 44 5 5 HELIX 3 AA3 HIS A 45 LEU A 49 5 5 HELIX 4 AA4 ARG A 63 VAL A 81 1 19 HELIX 5 AA5 ASN A 98 ASP A 111 1 14 HELIX 6 AA6 SER A 121 LEU A 124 5 4 HELIX 7 AA7 THR A 141 SER A 147 5 7 HELIX 8 AA8 SER A 157 GLU A 164 1 8 HELIX 9 AA9 HIS A 174 ARG A 179 1 6 HELIX 10 AB1 ASN A 182 GLY A 194 1 13 HELIX 11 AB2 VAL A 204 ARG A 216 1 13 HELIX 12 AB3 SER A 227 ASP A 239 1 13 HELIX 13 AB4 SER A 256 LEU A 268 1 13 HELIX 14 AB5 ASN A 280 PRO A 285 5 6 HELIX 15 AB6 ASP A 286 ASN A 304 1 19 HELIX 16 AB7 GLN A 334 LEU A 354 1 21 HELIX 17 AB8 GLY A 375 LEU A 386 1 12 HELIX 18 AB9 THR A 427 LYS A 439 1 13 SHEET 1 AA1 8 VAL A 35 VAL A 37 0 SHEET 2 AA1 8 ALA A 52 ASN A 56 1 O VAL A 54 N SER A 36 SHEET 3 AA1 8 GLN A 10 ALA A 15 1 N ALA A 15 O ILE A 55 SHEET 4 AA1 8 GLY A 85 LYS A 90 1 O ILE A 88 N LEU A 12 SHEET 5 AA1 8 LEU A 223 GLY A 226 1 O LEU A 224 N LYS A 89 SHEET 6 AA1 8 ALA A 115 ALA A 118 1 N LEU A 116 O LEU A 223 SHEET 7 AA1 8 LEU A 197 LEU A 200 1 O ILE A 198 N ILE A 117 SHEET 8 AA1 8 VAL A 170 ILE A 173 1 N ALA A 171 O ILE A 199 SHEET 1 AA2 3 ARG A 126 ARG A 129 0 SHEET 2 AA2 3 GLU A 132 VAL A 135 -1 O GLU A 132 N ARG A 129 SHEET 3 AA2 3 ARG A 138 ARG A 139 -1 O ARG A 138 N VAL A 135 SHEET 1 AA3 7 VAL A 272 ASP A 278 0 SHEET 2 AA3 7 HIS A 307 CYS A 313 1 O ILE A 309 N VAL A 275 SHEET 3 AA3 7 LEU A 248 VAL A 252 1 N ALA A 250 O ILE A 310 SHEET 4 AA3 7 GLY A 370 SER A 374 1 O TYR A 372 N VAL A 251 SHEET 5 AA3 7 PRO A 415 LYS A 419 1 O MET A 417 N LEU A 371 SHEET 6 AA3 7 VAL A 401 LEU A 407 -1 N GLY A 404 O VAL A 416 SHEET 7 AA3 7 GLY A 390 ILE A 397 -1 N GLN A 392 O TYR A 405 CISPEP 1 GLY A 50 ASP A 51 0 -3.69 CISPEP 2 ASP A 148 PRO A 149 0 -2.48 CISPEP 3 LEU A 367 PRO A 368 0 -6.06 CISPEP 4 SER A 374 GLY A 375 0 -4.96 SITE 1 AC1 11 ASP A 17 GLY A 20 ARG A 60 LYS A 90 SITE 2 AC1 11 ASP A 92 SER A 93 HOH A 725 HOH A 737 SITE 3 AC1 11 HOH A 752 HOH A 771 HOH A 803 CRYST1 153.696 47.611 64.142 90.00 107.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006506 0.000000 0.002004 0.00000 SCALE2 0.000000 0.021004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016313 0.00000