HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-DEC-14 4XG8 TITLE CRYSTAL STRUCTURE OF AN INHIBITOR-BOUND SYK COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE SYK; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN, RESIDUES 356-635; COMPND 5 SYNONYM: SPLEEN TYROSINE KINASE,P72-SYK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SYK KINASE, INHIBITOR, SPLEEN TYROSINE KINASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.LEE,J.CHOI,B.G.HAN,H.SONG,J.S.KOH,B.I.LEE REVDAT 5 08-NOV-23 4XG8 1 REMARK REVDAT 4 05-FEB-20 4XG8 1 REMARK REVDAT 3 19-OCT-16 4XG8 1 JRNL REVDAT 2 31-AUG-16 4XG8 1 JRNL REVDAT 1 30-DEC-15 4XG8 0 JRNL AUTH S.J.LEE,J.S.CHOI,B.G.HAN,H.S.KIM,H.J.SONG,J.LEE,S.NAM, JRNL AUTH 2 S.H.GOH,J.H.KIM,J.S.KOH,B.I.LEE JRNL TITL CRYSTAL STRUCTURES OF SPLEEN TYROSINE KINASE IN COMPLEX WITH JRNL TITL 2 NOVEL INHIBITORS: STRUCTURAL INSIGHTS FOR DESIGN OF JRNL TITL 3 ANTICANCER DRUGS JRNL REF FEBS J. V. 283 3613 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27504936 JRNL DOI 10.1111/FEBS.13831 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 19912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 3.93000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : -1.97000 REMARK 3 B13 (A**2) : -0.60000 REMARK 3 B23 (A**2) : 0.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.731 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4299 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4194 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5790 ; 1.534 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9545 ; 1.065 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 6.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;35.889 ;24.213 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 786 ;15.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4750 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 980 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2039 ; 3.258 ; 5.435 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2038 ; 3.247 ; 5.434 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2533 ; 5.021 ; 8.129 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2534 ; 5.021 ; 8.131 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2260 ; 3.243 ; 5.710 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2261 ; 3.243 ; 5.710 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3254 ; 5.076 ; 8.455 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4908 ; 7.607 ;42.952 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4909 ; 7.607 ;42.956 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10~20%(V/V) PEG3350, 100 MM TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 ILE A 358 REMARK 465 ARG A 359 REMARK 465 PRO A 360 REMARK 465 LYS A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 TYR A 364 REMARK 465 LEU A 365 REMARK 465 ASN A 381 REMARK 465 PHE A 382 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 LYS A 405 REMARK 465 ASN A 406 REMARK 465 GLU A 407 REMARK 465 ALA A 408 REMARK 465 ASN A 409 REMARK 465 GLY A 532 REMARK 465 LYS A 533 REMARK 465 TRP A 534 REMARK 465 LEU A 636 REMARK 465 GLU A 637 REMARK 465 HIS A 638 REMARK 465 HIS A 639 REMARK 465 HIS A 640 REMARK 465 HIS A 641 REMARK 465 HIS A 642 REMARK 465 HIS A 643 REMARK 465 HIS A 644 REMARK 465 HIS A 645 REMARK 465 GLU C 356 REMARK 465 GLU C 357 REMARK 465 ILE C 358 REMARK 465 ARG C 359 REMARK 465 PRO C 360 REMARK 465 LYS C 361 REMARK 465 GLU C 362 REMARK 465 VAL C 363 REMARK 465 ASN C 381 REMARK 465 PHE C 382 REMARK 465 ASN C 406 REMARK 465 GLU C 407 REMARK 465 ALA C 408 REMARK 465 ASN C 409 REMARK 465 ASP C 410 REMARK 465 THR C 530 REMARK 465 HIS C 531 REMARK 465 GLY C 532 REMARK 465 LYS C 533 REMARK 465 TRP C 534 REMARK 465 TYR C 630 REMARK 465 TYR C 631 REMARK 465 ASP C 632 REMARK 465 VAL C 633 REMARK 465 VAL C 634 REMARK 465 ASN C 635 REMARK 465 LEU C 636 REMARK 465 GLU C 637 REMARK 465 HIS C 638 REMARK 465 HIS C 639 REMARK 465 HIS C 640 REMARK 465 HIS C 641 REMARK 465 HIS C 642 REMARK 465 HIS C 643 REMARK 465 HIS C 644 REMARK 465 HIS C 645 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 599 O HOH C 801 1.67 REMARK 500 NH2 ARG C 464 O HOH C 802 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 369 33.31 -90.98 REMARK 500 ALA A 441 -144.51 -153.61 REMARK 500 HIS A 465 5.90 -67.34 REMARK 500 ASP A 494 31.15 -147.68 REMARK 500 ASP A 512 68.41 66.71 REMARK 500 SER A 567 31.84 -92.65 REMARK 500 TYR A 568 43.32 35.10 REMARK 500 TYR A 573 52.33 36.97 REMARK 500 LYS C 375 -169.95 -78.18 REMARK 500 LYS C 394 -31.30 -143.89 REMARK 500 ALA C 441 -85.24 -138.76 REMARK 500 ASP C 494 38.60 -150.76 REMARK 500 ASP C 512 72.58 65.43 REMARK 500 PRO C 598 175.06 -54.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X8G A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X8G C 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XG2 RELATED DB: PDB REMARK 900 A LIGAND-FREE PROTEIN REMARK 900 RELATED ID: 4XG3 RELATED DB: PDB REMARK 900 RELATED ID: 4XG4 RELATED DB: PDB REMARK 900 RELATED ID: 4XG5 RELATED DB: PDB REMARK 900 RELATED ID: 4XG6 RELATED DB: PDB REMARK 900 RELATED ID: 4XG7 RELATED DB: PDB REMARK 900 RELATED ID: 4XG9 RELATED DB: PDB DBREF 4XG8 A 356 635 UNP P43405 KSYK_HUMAN 356 635 DBREF 4XG8 C 356 635 UNP P43405 KSYK_HUMAN 356 635 SEQADV 4XG8 LEU A 636 UNP P43405 EXPRESSION TAG SEQADV 4XG8 GLU A 637 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 638 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 639 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 640 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 641 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 642 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 643 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 644 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 645 UNP P43405 EXPRESSION TAG SEQADV 4XG8 LEU C 636 UNP P43405 EXPRESSION TAG SEQADV 4XG8 GLU C 637 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 638 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 639 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 640 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 641 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 642 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 643 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 644 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 645 UNP P43405 EXPRESSION TAG SEQRES 1 A 290 GLU GLU ILE ARG PRO LYS GLU VAL TYR LEU ASP ARG LYS SEQRES 2 A 290 LEU LEU THR LEU GLU ASP LYS GLU LEU GLY SER GLY ASN SEQRES 3 A 290 PHE GLY THR VAL LYS LYS GLY TYR TYR GLN MET LYS LYS SEQRES 4 A 290 VAL VAL LYS THR VAL ALA VAL LYS ILE LEU LYS ASN GLU SEQRES 5 A 290 ALA ASN ASP PRO ALA LEU LYS ASP GLU LEU LEU ALA GLU SEQRES 6 A 290 ALA ASN VAL MET GLN GLN LEU ASP ASN PRO TYR ILE VAL SEQRES 7 A 290 ARG MET ILE GLY ILE CYS GLU ALA GLU SER TRP MET LEU SEQRES 8 A 290 VAL MET GLU MET ALA GLU LEU GLY PRO LEU ASN LYS TYR SEQRES 9 A 290 LEU GLN GLN ASN ARG HIS VAL LYS ASP LYS ASN ILE ILE SEQRES 10 A 290 GLU LEU VAL HIS GLN VAL SER MET GLY MET LYS TYR LEU SEQRES 11 A 290 GLU GLU SER ASN PHE VAL HIS ARG ASP LEU ALA ALA ARG SEQRES 12 A 290 ASN VAL LEU LEU VAL THR GLN HIS TYR ALA LYS ILE SER SEQRES 13 A 290 ASP PHE GLY LEU SER LYS ALA LEU ARG ALA ASP GLU ASN SEQRES 14 A 290 TYR TYR LYS ALA GLN THR HIS GLY LYS TRP PRO VAL LYS SEQRES 15 A 290 TRP TYR ALA PRO GLU CYS ILE ASN TYR TYR LYS PHE SER SEQRES 16 A 290 SER LYS SER ASP VAL TRP SER PHE GLY VAL LEU MET TRP SEQRES 17 A 290 GLU ALA PHE SER TYR GLY GLN LYS PRO TYR ARG GLY MET SEQRES 18 A 290 LYS GLY SER GLU VAL THR ALA MET LEU GLU LYS GLY GLU SEQRES 19 A 290 ARG MET GLY CYS PRO ALA GLY CYS PRO ARG GLU MET TYR SEQRES 20 A 290 ASP LEU MET ASN LEU CYS TRP THR TYR ASP VAL GLU ASN SEQRES 21 A 290 ARG PRO GLY PHE ALA ALA VAL GLU LEU ARG LEU ARG ASN SEQRES 22 A 290 TYR TYR TYR ASP VAL VAL ASN LEU GLU HIS HIS HIS HIS SEQRES 23 A 290 HIS HIS HIS HIS SEQRES 1 C 290 GLU GLU ILE ARG PRO LYS GLU VAL TYR LEU ASP ARG LYS SEQRES 2 C 290 LEU LEU THR LEU GLU ASP LYS GLU LEU GLY SER GLY ASN SEQRES 3 C 290 PHE GLY THR VAL LYS LYS GLY TYR TYR GLN MET LYS LYS SEQRES 4 C 290 VAL VAL LYS THR VAL ALA VAL LYS ILE LEU LYS ASN GLU SEQRES 5 C 290 ALA ASN ASP PRO ALA LEU LYS ASP GLU LEU LEU ALA GLU SEQRES 6 C 290 ALA ASN VAL MET GLN GLN LEU ASP ASN PRO TYR ILE VAL SEQRES 7 C 290 ARG MET ILE GLY ILE CYS GLU ALA GLU SER TRP MET LEU SEQRES 8 C 290 VAL MET GLU MET ALA GLU LEU GLY PRO LEU ASN LYS TYR SEQRES 9 C 290 LEU GLN GLN ASN ARG HIS VAL LYS ASP LYS ASN ILE ILE SEQRES 10 C 290 GLU LEU VAL HIS GLN VAL SER MET GLY MET LYS TYR LEU SEQRES 11 C 290 GLU GLU SER ASN PHE VAL HIS ARG ASP LEU ALA ALA ARG SEQRES 12 C 290 ASN VAL LEU LEU VAL THR GLN HIS TYR ALA LYS ILE SER SEQRES 13 C 290 ASP PHE GLY LEU SER LYS ALA LEU ARG ALA ASP GLU ASN SEQRES 14 C 290 TYR TYR LYS ALA GLN THR HIS GLY LYS TRP PRO VAL LYS SEQRES 15 C 290 TRP TYR ALA PRO GLU CYS ILE ASN TYR TYR LYS PHE SER SEQRES 16 C 290 SER LYS SER ASP VAL TRP SER PHE GLY VAL LEU MET TRP SEQRES 17 C 290 GLU ALA PHE SER TYR GLY GLN LYS PRO TYR ARG GLY MET SEQRES 18 C 290 LYS GLY SER GLU VAL THR ALA MET LEU GLU LYS GLY GLU SEQRES 19 C 290 ARG MET GLY CYS PRO ALA GLY CYS PRO ARG GLU MET TYR SEQRES 20 C 290 ASP LEU MET ASN LEU CYS TRP THR TYR ASP VAL GLU ASN SEQRES 21 C 290 ARG PRO GLY PHE ALA ALA VAL GLU LEU ARG LEU ARG ASN SEQRES 22 C 290 TYR TYR TYR ASP VAL VAL ASN LEU GLU HIS HIS HIS HIS SEQRES 23 C 290 HIS HIS HIS HIS HET X8G A 700 30 HET X8G C 700 30 HETNAM X8G 1-[(1-{2-[(3-CHLORO-1-METHYL-1H-INDAZOL-5-YL) HETNAM 2 X8G AMINO]PYRIMIDIN-4-YL}-3-METHYL-1H-PYRAZOL-4-YL) HETNAM 3 X8G METHYL]AZETIDIN-3-OL FORMUL 3 X8G 2(C20 H21 CL N8 O) FORMUL 5 HOH *32(H2 O) HELIX 1 AA1 ASP A 366 LYS A 368 5 3 HELIX 2 AA2 PRO A 411 GLN A 426 1 16 HELIX 3 AA3 LEU A 456 ASN A 463 1 8 HELIX 4 AA4 LYS A 467 SER A 488 1 22 HELIX 5 AA5 ALA A 496 ARG A 498 5 3 HELIX 6 AA6 ASP A 512 SER A 516 5 5 HELIX 7 AA7 PRO A 535 TYR A 539 5 5 HELIX 8 AA8 ALA A 540 TYR A 547 1 8 HELIX 9 AA9 SER A 551 SER A 567 1 17 HELIX 10 AB1 LYS A 577 LYS A 587 1 11 HELIX 11 AB2 PRO A 598 TRP A 609 1 12 HELIX 12 AB3 GLY A 618 ASN A 635 1 18 HELIX 13 AB4 ASP C 366 LYS C 368 5 3 HELIX 14 AB5 ALA C 412 GLN C 426 1 15 HELIX 15 AB6 LEU C 456 GLN C 462 1 7 HELIX 16 AB7 LYS C 467 SER C 488 1 22 HELIX 17 AB8 ALA C 496 ARG C 498 5 3 HELIX 18 AB9 PRO C 535 TYR C 539 5 5 HELIX 19 AC1 ALA C 540 TYR C 546 1 7 HELIX 20 AC2 SER C 551 SER C 567 1 17 HELIX 21 AC3 LYS C 577 LYS C 587 1 11 HELIX 22 AC4 PRO C 598 TRP C 609 1 12 HELIX 23 AC5 GLY C 618 TYR C 629 1 12 SHEET 1 AA1 5 LEU A 370 LEU A 372 0 SHEET 2 AA1 5 THR A 384 TYR A 390 -1 O TYR A 389 N THR A 371 SHEET 3 AA1 5 LYS A 397 ILE A 403 -1 O VAL A 399 N GLY A 388 SHEET 4 AA1 5 TRP A 444 GLU A 449 -1 O MET A 448 N ALA A 400 SHEET 5 AA1 5 MET A 435 GLU A 440 -1 N ILE A 436 O VAL A 447 SHEET 1 AA2 3 GLY A 454 PRO A 455 0 SHEET 2 AA2 3 VAL A 500 THR A 504 -1 O LEU A 502 N GLY A 454 SHEET 3 AA2 3 TYR A 507 ILE A 510 -1 O LYS A 509 N LEU A 501 SHEET 1 AA3 2 PHE A 490 VAL A 491 0 SHEET 2 AA3 2 LYS A 517 ALA A 518 -1 O LYS A 517 N VAL A 491 SHEET 1 AA4 2 TYR A 525 LYS A 527 0 SHEET 2 AA4 2 LYS A 548 SER A 550 -1 O PHE A 549 N TYR A 526 SHEET 1 AA5 4 GLU A 589 ARG A 590 0 SHEET 2 AA5 4 VAL C 396 ILE C 403 -1 O VAL C 396 N ARG A 590 SHEET 3 AA5 4 THR C 384 GLN C 391 -1 N GLY C 388 O VAL C 399 SHEET 4 AA5 4 LEU C 370 LEU C 372 -1 N THR C 371 O TYR C 389 SHEET 1 AA6 4 GLU A 589 ARG A 590 0 SHEET 2 AA6 4 VAL C 396 ILE C 403 -1 O VAL C 396 N ARG A 590 SHEET 3 AA6 4 TRP C 444 GLU C 449 -1 O MET C 448 N ALA C 400 SHEET 4 AA6 4 MET C 435 GLU C 440 -1 N ILE C 436 O VAL C 447 SHEET 1 AA7 3 GLY C 454 PRO C 455 0 SHEET 2 AA7 3 VAL C 500 THR C 504 -1 O LEU C 502 N GLY C 454 SHEET 3 AA7 3 TYR C 507 ILE C 510 -1 O LYS C 509 N LEU C 501 SHEET 1 AA8 2 PHE C 490 VAL C 491 0 SHEET 2 AA8 2 LYS C 517 ALA C 518 -1 O LYS C 517 N VAL C 491 SHEET 1 AA9 2 TYR C 525 LYS C 527 0 SHEET 2 AA9 2 LYS C 548 SER C 550 -1 O PHE C 549 N TYR C 526 SITE 1 AC1 11 LEU A 377 MET A 448 GLU A 449 MET A 450 SITE 2 AC1 11 ALA A 451 GLY A 454 PRO A 455 ARG A 498 SITE 3 AC1 11 ASN A 499 LEU A 501 ASP A 512 SITE 1 AC2 15 LEU C 377 GLY C 378 VAL C 385 ALA C 400 SITE 2 AC2 15 MET C 448 GLU C 449 MET C 450 ALA C 451 SITE 3 AC2 15 GLY C 454 PRO C 455 ARG C 498 ASN C 499 SITE 4 AC2 15 LEU C 501 SER C 511 ASP C 512 CRYST1 39.964 42.212 87.720 99.97 90.50 101.05 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025023 0.004887 0.001108 0.00000 SCALE2 0.000000 0.024138 0.004370 0.00000 SCALE3 0.000000 0.000000 0.011586 0.00000