HEADER PROTEIN BINDING 01-JAN-15 4XGO TITLE CRYSTAL STRUCTURE OF LEUCINE-RICH REPEAT DOMAIN OF APL1B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANOPHELES PLASMODIUM-RESPONSIVE LEUCINE-RICH REPEAT PROTEIN COMPND 3 1B; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RESIDUES 21-370; COMPND 6 SYNONYM: APL1B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; SOURCE 3 ORGANISM_COMMON: AFRICAN MALARIA MOSQUITO; SOURCE 4 ORGANISM_TAXID: 7165; SOURCE 5 GENE: APL1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PFASTBAC1 KEYWDS PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.WILLIAMS,B.SUMMERS,R.H.G.BAXTER REVDAT 2 29-JUL-20 4XGO 1 COMPND SOURCE REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 01-APR-15 4XGO 0 JRNL AUTH M.WILLIAMS,B.J.SUMMERS,R.H.BAXTER JRNL TITL BIOPHYSICAL ANALYSIS OF ANOPHELES GAMBIAE LEUCINE-RICH JRNL TITL 2 REPEAT PROTEINS APL1A1, APLB AND APL1C AND THEIR INTERACTION JRNL TITL 3 WITH LRIM1. JRNL REF PLOS ONE V. 10 18911 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25775123 JRNL DOI 10.1371/JOURNAL.PONE.0118911 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 91036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.372 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5647 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5309 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7718 ; 1.314 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12151 ; 0.762 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 5.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;42.522 ;25.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 926 ;11.596 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.249 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 924 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6358 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1317 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2709 ; 1.041 ; 1.579 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2707 ; 1.041 ; 1.577 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3385 ; 1.839 ; 2.351 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3386 ; 1.838 ; 2.352 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2938 ; 1.327 ; 1.760 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2931 ; 1.320 ; 1.747 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4309 ; 2.133 ; 2.556 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6780 ; 7.823 ;14.691 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6635 ; 7.663 ;14.123 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7844 13.0597 50.2903 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0147 REMARK 3 T33: 0.0665 T12: -0.0022 REMARK 3 T13: 0.0163 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.1599 L22: 0.3783 REMARK 3 L33: 0.2660 L12: 0.0635 REMARK 3 L13: -0.4485 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.0872 S13: -0.0353 REMARK 3 S21: -0.0373 S22: 0.0279 S23: 0.0644 REMARK 3 S31: 0.0606 S32: -0.0284 S33: 0.0459 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 364 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0735 22.0064 91.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1070 REMARK 3 T33: 0.0687 T12: -0.0386 REMARK 3 T13: 0.0852 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4064 L22: 0.4083 REMARK 3 L33: 0.8937 L12: 0.0996 REMARK 3 L13: 0.5578 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: 0.0201 S13: -0.0168 REMARK 3 S21: 0.2528 S22: -0.0752 S23: 0.1499 REMARK 3 S31: 0.0830 S32: 0.1066 S33: -0.0660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 107.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 36.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.1 M LITHIUM REMARK 280 SULFATE, 1.0 M AMMONIUM PHOSPHATE, PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.21150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.47800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.21150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.47800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 GLN A 22 REMARK 465 LEU A 23 REMARK 465 SER A 24 REMARK 465 ASP A 365 REMARK 465 LYS A 366 REMARK 465 PRO A 367 REMARK 465 TYR A 368 REMARK 465 LEU A 369 REMARK 465 ASP A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 GLY B 21 REMARK 465 GLN B 22 REMARK 465 LEU B 23 REMARK 465 SER B 24 REMARK 465 TYR B 25 REMARK 465 LYS B 26 REMARK 465 TYR B 264 REMARK 465 GLY B 265 REMARK 465 ARG B 266 REMARK 465 PRO B 267 REMARK 465 ILE B 268 REMARK 465 PRO B 269 REMARK 465 ALA B 338 REMARK 465 GLN B 339 REMARK 465 PRO B 340 REMARK 465 ALA B 341 REMARK 465 ASP B 365 REMARK 465 LYS B 366 REMARK 465 PRO B 367 REMARK 465 TYR B 368 REMARK 465 LEU B 369 REMARK 465 ASP B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CD CE NZ REMARK 470 LYS A 44 NZ REMARK 470 ARG A 195 NE CZ NH1 NH2 REMARK 470 LYS A 236 CE NZ REMARK 470 LYS A 244 CE NZ REMARK 470 ARG A 257 NH1 NH2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 288 OE1 NE2 REMARK 470 LYS A 293 CE NZ REMARK 470 HIS A 313 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 335 CZ NH1 NH2 REMARK 470 GLN A 339 CB CG CD OE1 NE2 REMARK 470 PRO A 340 CB CG CD REMARK 470 ARG B 80 CZ NH1 NH2 REMARK 470 LYS B 116 CE NZ REMARK 470 LYS B 206 NZ REMARK 470 LYS B 236 CD CE NZ REMARK 470 ILE B 237 CD1 REMARK 470 TYR B 239 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 244 NZ REMARK 470 LYS B 293 CD CE NZ REMARK 470 HIS B 313 CB CG ND1 CD2 CE1 NE2 REMARK 470 THR B 314 CB OG1 CG2 REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 337 CG1 CG2 REMARK 470 HIS B 343 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 348 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 351 CG1 CG2 CD1 REMARK 470 ASP B 352 CG OD1 OD2 REMARK 470 LYS B 362 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1205 O HOH A 1385 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 -159.56 -116.00 REMARK 500 ARG A 100 61.38 64.06 REMARK 500 MET A 122 42.03 -144.25 REMARK 500 ASN A 125 -159.59 -109.61 REMARK 500 ASN A 149 -150.93 -116.22 REMARK 500 ILE A 159 79.62 -115.80 REMARK 500 ASN A 189 -159.12 -127.51 REMARK 500 HIS A 209 63.87 66.53 REMARK 500 ASN A 232 -160.50 -120.97 REMARK 500 ARG A 247 22.12 -144.85 REMARK 500 ASN A 256 -150.63 -108.27 REMARK 500 ASN A 279 -152.04 -118.70 REMARK 500 HIS A 301 64.97 61.96 REMARK 500 THR A 311 45.94 -96.66 REMARK 500 ASN A 323 -154.22 -127.44 REMARK 500 ASN B 77 -162.49 -110.78 REMARK 500 ARG B 100 67.08 62.46 REMARK 500 ASN B 125 -161.12 -120.20 REMARK 500 ASN B 149 -154.81 -118.08 REMARK 500 ASN B 170 -159.67 -135.78 REMARK 500 ASN B 189 -156.66 -125.48 REMARK 500 HIS B 209 66.91 64.06 REMARK 500 ASN B 232 -163.12 -120.47 REMARK 500 ASN B 256 -153.28 -113.60 REMARK 500 ASN B 279 -155.73 -119.42 REMARK 500 GLN B 288 -47.10 -146.57 REMARK 500 GLN B 290 -3.08 -57.28 REMARK 500 THR B 311 95.19 -69.48 REMARK 500 ASN B 323 -154.67 -130.83 REMARK 500 ASP B 352 -20.79 85.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1434 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1483 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A1485 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1487 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1488 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1491 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B1170 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1398 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1399 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B1400 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1431 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1007 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 199 O REMARK 620 2 LEU B 202 O 143.0 REMARK 620 N 1 DBREF 4XGO A 21 370 UNP F2YBL9 F2YBL9_ANOGA 21 370 DBREF 4XGO B 21 370 UNP F2YBL9 F2YBL9_ANOGA 21 370 SEQADV 4XGO MET A 120 UNP F2YBL9 LEU 120 CONFLICT SEQADV 4XGO ALA A 176 UNP F2YBL9 VAL 176 CONFLICT SEQADV 4XGO VAL A 225 UNP F2YBL9 THR 225 CONFLICT SEQADV 4XGO LYS A 236 UNP F2YBL9 ILE 236 CONFLICT SEQADV 4XGO TYR A 239 UNP F2YBL9 ILE 239 CONFLICT SEQADV 4XGO GLN A 240 UNP F2YBL9 HIS 240 CONFLICT SEQADV 4XGO LYS A 244 UNP F2YBL9 THR 244 CONFLICT SEQADV 4XGO MET A 245 UNP F2YBL9 ILE 245 CONFLICT SEQADV 4XGO HIS A 371 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS A 372 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS A 373 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS A 374 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS A 375 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS A 376 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO MET B 120 UNP F2YBL9 LEU 120 CONFLICT SEQADV 4XGO ALA B 176 UNP F2YBL9 VAL 176 CONFLICT SEQADV 4XGO VAL B 225 UNP F2YBL9 THR 225 CONFLICT SEQADV 4XGO LYS B 236 UNP F2YBL9 ILE 236 CONFLICT SEQADV 4XGO TYR B 239 UNP F2YBL9 ILE 239 CONFLICT SEQADV 4XGO GLN B 240 UNP F2YBL9 HIS 240 CONFLICT SEQADV 4XGO LYS B 244 UNP F2YBL9 THR 244 CONFLICT SEQADV 4XGO MET B 245 UNP F2YBL9 ILE 245 CONFLICT SEQADV 4XGO HIS B 371 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS B 372 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS B 373 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS B 374 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS B 375 UNP F2YBL9 EXPRESSION TAG SEQADV 4XGO HIS B 376 UNP F2YBL9 EXPRESSION TAG SEQRES 1 A 356 GLY GLN LEU SER TYR LYS SER MET HIS LEU THR PRO PHE SEQRES 2 A 356 THR LEU SER ALA LEU LEU ALA SER PHE HIS LYS VAL GLU SEQRES 3 A 356 VAL LEU ASN LEU ASN GLY LEU GLN ILE GLU GLU ILE ASP SEQRES 4 A 356 THR ASN ALA PHE ALA TYR ALA HIS THR ILE GLN LYS LEU SEQRES 5 A 356 TYR MET ARG PHE ASN VAL ILE ARG TYR LEU PRO PRO HIS SEQRES 6 A 356 VAL PHE GLN ASN VAL PRO LEU LEU THR VAL LEU MET LEU SEQRES 7 A 356 ASP ARG ASN ASP LEU SER SER LEU PRO PRO GLY ILE PHE SEQRES 8 A 356 HIS ASN THR PRO LYS LEU THR MET MET SER MET SER ASN SEQRES 9 A 356 ASN ASN LEU GLU ARG ILE GLU ASP ASP THR PHE GLN ALA SEQRES 10 A 356 THR THR ALA LEU GLN ASN LEU GLN LEU SER SER ASN ARG SEQRES 11 A 356 LEU THR HIS VAL ASP LEU ALA LEU ILE PRO SER LEU PHE SEQRES 12 A 356 HIS VAL ASN VAL SER TYR ASN LEU LEU SER THR LEU ALA SEQRES 13 A 356 ILE PRO ILE ALA VAL GLU GLU LEU ASP ALA SER HIS ASN SEQRES 14 A 356 THR ILE ASN VAL VAL ARG GLY PRO VAL ASN VAL GLU LEU SEQRES 15 A 356 THR ILE LEU LYS LEU GLN HIS ASN ASN LEU THR ASP THR SEQRES 16 A 356 ALA TRP LEU LEU ASN TYR PRO GLY LEU VAL ASP VAL ASP SEQRES 17 A 356 LEU SER TYR ASN GLN LEU GLU LYS ILE THR TYR GLN HIS SEQRES 18 A 356 PHE VAL LYS MET GLN ARG LEU GLU ARG LEU TYR VAL SER SEQRES 19 A 356 ASN ASN ARG LEU VAL ALA LEU ASP PHE TYR GLY ARG PRO SEQRES 20 A 356 ILE PRO THR LEU LYS VAL LEU ASP LEU SER HIS ASN HIS SEQRES 21 A 356 LEU MET TRP VAL GLU HIS ASN GLN ALA GLN PHE ASP LYS SEQRES 22 A 356 LEU GLN TYR LEU TYR LEU ASP HIS ASN SER ILE VAL THR SEQRES 23 A 356 PHE LYS LEU SER THR SER HIS THR LEU LYS ASN LEU THR SEQRES 24 A 356 LEU SER HIS ASN ASP TRP ASP CYS ASN SER LEU ARG ALA SEQRES 25 A 356 LEU PHE ARG ASN VAL ALA GLN PRO ALA VAL HIS ASP ALA SEQRES 26 A 356 ASP GLN HIS CYS LYS ILE ASP TYR HIS LEU GLU HIS GLY SEQRES 27 A 356 LEU CYS CYS LYS GLU SER ASP LYS PRO TYR LEU ASP HIS SEQRES 28 A 356 HIS HIS HIS HIS HIS SEQRES 1 B 356 GLY GLN LEU SER TYR LYS SER MET HIS LEU THR PRO PHE SEQRES 2 B 356 THR LEU SER ALA LEU LEU ALA SER PHE HIS LYS VAL GLU SEQRES 3 B 356 VAL LEU ASN LEU ASN GLY LEU GLN ILE GLU GLU ILE ASP SEQRES 4 B 356 THR ASN ALA PHE ALA TYR ALA HIS THR ILE GLN LYS LEU SEQRES 5 B 356 TYR MET ARG PHE ASN VAL ILE ARG TYR LEU PRO PRO HIS SEQRES 6 B 356 VAL PHE GLN ASN VAL PRO LEU LEU THR VAL LEU MET LEU SEQRES 7 B 356 ASP ARG ASN ASP LEU SER SER LEU PRO PRO GLY ILE PHE SEQRES 8 B 356 HIS ASN THR PRO LYS LEU THR MET MET SER MET SER ASN SEQRES 9 B 356 ASN ASN LEU GLU ARG ILE GLU ASP ASP THR PHE GLN ALA SEQRES 10 B 356 THR THR ALA LEU GLN ASN LEU GLN LEU SER SER ASN ARG SEQRES 11 B 356 LEU THR HIS VAL ASP LEU ALA LEU ILE PRO SER LEU PHE SEQRES 12 B 356 HIS VAL ASN VAL SER TYR ASN LEU LEU SER THR LEU ALA SEQRES 13 B 356 ILE PRO ILE ALA VAL GLU GLU LEU ASP ALA SER HIS ASN SEQRES 14 B 356 THR ILE ASN VAL VAL ARG GLY PRO VAL ASN VAL GLU LEU SEQRES 15 B 356 THR ILE LEU LYS LEU GLN HIS ASN ASN LEU THR ASP THR SEQRES 16 B 356 ALA TRP LEU LEU ASN TYR PRO GLY LEU VAL ASP VAL ASP SEQRES 17 B 356 LEU SER TYR ASN GLN LEU GLU LYS ILE THR TYR GLN HIS SEQRES 18 B 356 PHE VAL LYS MET GLN ARG LEU GLU ARG LEU TYR VAL SER SEQRES 19 B 356 ASN ASN ARG LEU VAL ALA LEU ASP PHE TYR GLY ARG PRO SEQRES 20 B 356 ILE PRO THR LEU LYS VAL LEU ASP LEU SER HIS ASN HIS SEQRES 21 B 356 LEU MET TRP VAL GLU HIS ASN GLN ALA GLN PHE ASP LYS SEQRES 22 B 356 LEU GLN TYR LEU TYR LEU ASP HIS ASN SER ILE VAL THR SEQRES 23 B 356 PHE LYS LEU SER THR SER HIS THR LEU LYS ASN LEU THR SEQRES 24 B 356 LEU SER HIS ASN ASP TRP ASP CYS ASN SER LEU ARG ALA SEQRES 25 B 356 LEU PHE ARG ASN VAL ALA GLN PRO ALA VAL HIS ASP ALA SEQRES 26 B 356 ASP GLN HIS CYS LYS ILE ASP TYR HIS LEU GLU HIS GLY SEQRES 27 B 356 LEU CYS CYS LYS GLU SER ASP LYS PRO TYR LEU ASP HIS SEQRES 28 B 356 HIS HIS HIS HIS HIS MODRES 4XGO NAG C 1 NAG -D MODRES 4XGO NAG C 2 NAG -D MODRES 4XGO NAG D 1 NAG -D MODRES 4XGO NAG D 2 NAG -D HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET PO4 A1003 5 HET ACT A1004 4 HET GOL A1005 6 HET GOL A1006 6 HET GOL A1007 6 HET GOL A1008 6 HET GOL A1009 6 HET GOL A1010 6 HET CL A1011 1 HET ACT B1003 4 HET PO4 B1004 5 HET PO4 B1005 5 HET CL B1006 1 HET NA B1007 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 13 CL 2(CL 1-) FORMUL 18 NA NA 1+ FORMUL 19 HOH *772(H2 O) HELIX 1 AA1 THR A 31 LYS A 44 1 14 HELIX 2 AA2 HIS A 85 VAL A 90 5 6 HELIX 3 AA3 ASP A 155 ILE A 159 5 5 HELIX 4 AA4 THR A 215 TYR A 221 5 7 HELIX 5 AA5 THR A 238 VAL A 243 5 6 HELIX 6 AA6 CYS A 327 VAL A 337 1 11 HELIX 7 AA7 THR B 31 LYS B 44 1 14 HELIX 8 AA8 ASP B 155 ILE B 159 5 5 HELIX 9 AA9 THR B 215 TYR B 221 5 7 HELIX 10 AB1 THR B 238 VAL B 243 5 6 HELIX 11 AB2 GLN B 288 ASP B 292 5 5 HELIX 12 AB3 CYS B 327 VAL B 337 1 11 SHEET 1 AA1 2 MET A 28 LEU A 30 0 SHEET 2 AA1 2 ILE B 55 ILE B 58 1 O GLU B 57 N LEU A 30 SHEET 1 AA213 VAL A 47 ASN A 49 0 SHEET 2 AA213 LYS A 71 TYR A 73 1 O LYS A 71 N LEU A 48 SHEET 3 AA213 VAL A 95 MET A 97 1 O VAL A 95 N LEU A 72 SHEET 4 AA213 MET A 119 SER A 121 1 O SER A 121 N LEU A 96 SHEET 5 AA213 ASN A 143 GLN A 145 1 O ASN A 143 N MET A 120 SHEET 6 AA213 HIS A 164 ASN A 166 1 O ASN A 166 N LEU A 144 SHEET 7 AA213 GLU A 183 ASP A 185 1 O ASP A 185 N VAL A 165 SHEET 8 AA213 ILE A 204 LYS A 206 1 O LYS A 206 N LEU A 184 SHEET 9 AA213 ASP A 226 ASP A 228 1 O ASP A 226 N LEU A 205 SHEET 10 AA213 ARG A 250 TYR A 252 1 O ARG A 250 N VAL A 227 SHEET 11 AA213 VAL A 273 ASP A 275 1 O ASP A 275 N LEU A 251 SHEET 12 AA213 TYR A 296 TYR A 298 1 O TYR A 298 N LEU A 274 SHEET 13 AA213 ASN A 317 THR A 319 1 O ASN A 317 N LEU A 297 SHEET 1 AA3 2 ILE A 55 ILE A 58 0 SHEET 2 AA3 2 MET B 28 LEU B 30 1 O LEU B 30 N GLU A 57 SHEET 1 AA4 2 THR A 174 ALA A 176 0 SHEET 2 AA4 2 VAL A 193 ARG A 195 1 O VAL A 193 N LEU A 175 SHEET 1 AA5 2 ALA A 260 PHE A 263 0 SHEET 2 AA5 2 TRP A 283 HIS A 286 1 O GLU A 285 N PHE A 263 SHEET 1 AA6 3 TRP A 325 ASP A 326 0 SHEET 2 AA6 3 LEU A 359 LYS A 362 1 O LYS A 362 N TRP A 325 SHEET 3 AA6 3 HIS A 354 GLU A 356 -1 N HIS A 354 O CYS A 361 SHEET 1 AA713 VAL B 47 ASN B 49 0 SHEET 2 AA713 LYS B 71 TYR B 73 1 O LYS B 71 N LEU B 48 SHEET 3 AA713 VAL B 95 MET B 97 1 O VAL B 95 N LEU B 72 SHEET 4 AA713 MET B 119 SER B 121 1 O SER B 121 N LEU B 96 SHEET 5 AA713 ASN B 143 GLN B 145 1 O GLN B 145 N MET B 120 SHEET 6 AA713 HIS B 164 ASN B 166 1 O ASN B 166 N LEU B 144 SHEET 7 AA713 GLU B 183 ASP B 185 1 O ASP B 185 N VAL B 165 SHEET 8 AA713 ILE B 204 LYS B 206 1 O LYS B 206 N LEU B 184 SHEET 9 AA713 ASP B 226 ASP B 228 1 O ASP B 226 N LEU B 205 SHEET 10 AA713 ARG B 250 TYR B 252 1 O TYR B 252 N VAL B 227 SHEET 11 AA713 VAL B 273 ASP B 275 1 O ASP B 275 N LEU B 251 SHEET 12 AA713 TYR B 296 TYR B 298 1 O TYR B 296 N LEU B 274 SHEET 13 AA713 ASN B 317 THR B 319 1 O ASN B 317 N LEU B 297 SHEET 1 AA8 2 THR B 174 ALA B 176 0 SHEET 2 AA8 2 VAL B 193 ARG B 195 1 O VAL B 193 N LEU B 175 SHEET 1 AA9 2 ALA B 260 PHE B 263 0 SHEET 2 AA9 2 TRP B 283 HIS B 286 1 O GLU B 285 N LEU B 261 SHEET 1 AB1 3 TRP B 325 ASP B 326 0 SHEET 2 AB1 3 LEU B 359 LYS B 362 1 O LYS B 362 N TRP B 325 SHEET 3 AB1 3 TYR B 353 GLU B 356 -1 N HIS B 354 O CYS B 361 SSBOND 1 CYS A 327 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 349 CYS A 360 1555 1555 2.06 SSBOND 3 CYS B 327 CYS B 361 1555 1555 2.03 SSBOND 4 CYS B 349 CYS B 360 1555 1555 2.04 LINK ND2 ASN A 166 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 166 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O ASN B 199 NA NA B1007 1555 1555 2.31 LINK O LEU B 202 NA NA B1007 1555 1555 2.32 CISPEP 1 ASN B 287 GLN B 288 0 -0.39 CISPEP 2 HIS B 313 THR B 314 0 7.15 CRYST1 64.423 74.956 214.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004665 0.00000