HEADER TRANSFERASE 04-JAN-15 4XH4 TITLE CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM PROPIONATE KINASE A88V TITLE 2 MUTANT, IN COMPLEX WITH AMPPNP AND PROPIONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPIONATE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-402; COMPND 5 EC: 2.7.2.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 3 ATCC 700720); SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 6 GENE: TDCD, OXD-2, STM3242; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRSET C PRSET C PRSETPRSET PRSET C KEYWDS TRANSFERASE, KINASE, TDCD, AMPPNP, PROPIONATE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.V.MURTHY,S.MATHIVANAN,S.CHITTORI,H.S.SAVITHRI,M.R.N.MURTHY REVDAT 3 08-NOV-23 4XH4 1 REMARK REVDAT 2 23-SEP-15 4XH4 1 REVDAT 1 19-AUG-15 4XH4 0 JRNL AUTH A.M.V.MURTHY,S.MATHIVANAN,S.CHITTORI,H.S.SAVITHRI, JRNL AUTH 2 M.R.N.MURTHY JRNL TITL STRUCTURES OF SUBSTRATE- AND NUCLEOTIDE-BOUND PROPIONATE JRNL TITL 2 KINASE FROM SALMONELLA TYPHIMURIUM: SUBSTRATE SPECIFICITY JRNL TITL 3 AND PHOSPHATE-TRANSFER MECHANISM JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1640 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26249345 JRNL DOI 10.1107/S1399004715009992 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 40234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3033 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2857 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4130 ; 1.978 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6522 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;36.173 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;13.644 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3477 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1577 ; 3.055 ; 3.165 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1576 ; 3.054 ; 3.163 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1970 ; 4.104 ; 4.730 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1971 ; 4.104 ; 4.732 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1456 ; 4.051 ; 3.495 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1457 ; 4.050 ; 3.496 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2160 ; 5.857 ; 5.128 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3394 ; 7.273 ;25.612 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3395 ; 7.272 ;25.618 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 1.0.7 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 32.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2E1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 30% PENTAERYTHRITOL REMARK 280 ETHOXYLATE, 0.05 M AMMONIUM SULPHATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.14667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.29333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.29333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.14667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.29333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 GOL A 502 LIES ON A SPECIAL POSITION. REMARK 375 O2 GOL A 502 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 665 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 398 REMARK 465 VAL A 399 REMARK 465 GLU A 400 REMARK 465 PHE A 401 REMARK 465 ALA A 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 4 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 ASN A 54 CG OD1 ND2 REMARK 470 HIS A 57 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 73 CE NZ REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 117 CG CD1 CD2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 LEU A 256 CG CD1 CD2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 272 CG1 CD1 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 GLU A 291 CD OE1 OE2 REMARK 470 LYS A 355 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 184 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 27 27.14 42.54 REMARK 500 PRO A 52 86.46 -65.54 REMARK 500 ALA A 56 -98.95 75.86 REMARK 500 ALA A 115 66.82 -153.25 REMARK 500 LEU A 117 -70.29 -60.98 REMARK 500 HIS A 175 17.34 58.42 REMARK 500 MET A 233 -158.84 -130.16 REMARK 500 SER A 267 -160.85 -116.16 REMARK 500 LEU A 275 -57.53 -131.30 REMARK 500 ASN A 380 87.68 -150.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPI A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XH1 RELATED DB: PDB REMARK 900 RELATED ID: 4XH5 RELATED DB: PDB DBREF 4XH4 A 1 402 UNP O06961 TDCD_SALTY 1 402 SEQADV 4XH4 MET A -13 UNP O06961 INITIATING METHIONINE SEQADV 4XH4 ARG A -12 UNP O06961 EXPRESSION TAG SEQADV 4XH4 GLY A -11 UNP O06961 EXPRESSION TAG SEQADV 4XH4 SER A -10 UNP O06961 EXPRESSION TAG SEQADV 4XH4 HIS A -9 UNP O06961 EXPRESSION TAG SEQADV 4XH4 HIS A -8 UNP O06961 EXPRESSION TAG SEQADV 4XH4 HIS A -7 UNP O06961 EXPRESSION TAG SEQADV 4XH4 HIS A -6 UNP O06961 EXPRESSION TAG SEQADV 4XH4 HIS A -5 UNP O06961 EXPRESSION TAG SEQADV 4XH4 HIS A -4 UNP O06961 EXPRESSION TAG SEQADV 4XH4 GLY A -3 UNP O06961 EXPRESSION TAG SEQADV 4XH4 MET A -2 UNP O06961 EXPRESSION TAG SEQADV 4XH4 ALA A -1 UNP O06961 EXPRESSION TAG SEQADV 4XH4 SER A 0 UNP O06961 EXPRESSION TAG SEQADV 4XH4 VAL A 88 UNP O06961 ALA 88 ENGINEERED MUTATION SEQRES 1 A 416 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 416 SER MET ASN GLU PHE PRO VAL VAL LEU VAL ILE ASN CYS SEQRES 3 A 416 GLY SER SER SER ILE LYS PHE SER VAL LEU ASP VAL ALA SEQRES 4 A 416 THR CYS ASP VAL LEU MET ALA GLY ILE ALA ASP GLY MET SEQRES 5 A 416 ASN THR GLU ASN ALA PHE LEU SER ILE ASN GLY ASP LYS SEQRES 6 A 416 PRO ILE ASN LEU ALA HIS SER ASN TYR GLU ASP ALA LEU SEQRES 7 A 416 LYS ALA ILE ALA PHE GLU LEU GLU LYS ARG ASP LEU THR SEQRES 8 A 416 ASP SER VAL ALA LEU ILE GLY HIS ARG ILE VAL HIS GLY SEQRES 9 A 416 GLY GLU LEU PHE THR GLN SER VAL ILE ILE THR ASP GLU SEQRES 10 A 416 ILE ILE ASP ASN ILE ARG ARG VAL SER PRO LEU ALA PRO SEQRES 11 A 416 LEU HIS ASN TYR ALA ASN LEU SER GLY ILE ASP ALA ALA SEQRES 12 A 416 ARG HIS LEU PHE PRO ALA VAL ARG GLN VAL ALA VAL PHE SEQRES 13 A 416 ASP THR SER PHE HIS GLN THR LEU ALA PRO GLU ALA TYR SEQRES 14 A 416 LEU TYR GLY LEU PRO TRP GLU TYR PHE SER SER LEU GLY SEQRES 15 A 416 VAL ARG ARG TYR GLY PHE HIS GLY THR SER HIS ARG TYR SEQRES 16 A 416 VAL SER ARG ARG ALA TYR GLU LEU LEU ASP LEU ASP GLU SEQRES 17 A 416 LYS ASP SER GLY LEU ILE VAL ALA HIS LEU GLY ASN GLY SEQRES 18 A 416 ALA SER ILE CYS ALA VAL ARG ASN GLY GLN SER VAL ASP SEQRES 19 A 416 THR SER MET GLY MET THR PRO LEU GLU GLY LEU MET MET SEQRES 20 A 416 GLY THR ARG SER GLY ASP VAL ASP PHE GLY ALA MET ALA SEQRES 21 A 416 TRP ILE ALA LYS GLU THR GLY GLN THR LEU SER ASP LEU SEQRES 22 A 416 GLU ARG VAL VAL ASN LYS GLU SER GLY LEU LEU GLY ILE SEQRES 23 A 416 SER GLY LEU SER SER ASP LEU ARG VAL LEU GLU LYS ALA SEQRES 24 A 416 TRP HIS GLU GLY HIS GLU ARG ALA ARG LEU ALA ILE LYS SEQRES 25 A 416 THR PHE VAL HIS ARG ILE ALA ARG HIS ILE ALA GLY HIS SEQRES 26 A 416 ALA ALA SER LEU HIS ARG LEU ASP GLY ILE ILE PHE THR SEQRES 27 A 416 GLY GLY ILE GLY GLU ASN SER VAL LEU ILE ARG GLN LEU SEQRES 28 A 416 VAL ILE GLU HIS LEU GLY VAL LEU GLY LEU THR LEU ASP SEQRES 29 A 416 VAL GLU MET ASN LYS GLN PRO ASN SER HIS GLY GLU ARG SEQRES 30 A 416 ILE ILE SER ALA ASN PRO SER GLN VAL ILE CYS ALA VAL SEQRES 31 A 416 ILE PRO THR ASN GLU GLU LYS MET ILE ALA LEU ASP ALA SEQRES 32 A 416 ILE HIS LEU GLY ASN VAL LYS ALA PRO VAL GLU PHE ALA HET ANP A 501 31 HET GOL A 502 6 HET SO4 A 503 5 HET PPI A 504 5 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PPI PROPANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 SO4 O4 S 2- FORMUL 5 PPI C3 H6 O2 FORMUL 6 HOH *135(H2 O) HELIX 1 AA1 ASN A 59 ARG A 74 1 16 HELIX 2 AA2 LEU A 76 ASP A 78 5 3 HELIX 3 AA3 THR A 101 SER A 112 1 12 HELIX 4 AA4 ALA A 115 PHE A 133 1 19 HELIX 5 AA5 THR A 144 LEU A 150 5 7 HELIX 6 AA6 ALA A 151 LEU A 156 1 6 HELIX 7 AA7 PRO A 160 GLY A 168 1 9 HELIX 8 AA8 HIS A 175 ASP A 191 1 17 HELIX 9 AA9 ASP A 241 GLY A 253 1 13 HELIX 10 AB1 THR A 255 GLU A 266 1 12 HELIX 11 AB2 SER A 267 GLY A 274 1 8 HELIX 12 AB3 ASP A 278 GLU A 288 1 11 HELIX 13 AB4 HIS A 290 ALA A 313 1 24 HELIX 14 AB5 GLY A 325 SER A 331 1 7 HELIX 15 AB6 SER A 331 HIS A 341 1 11 HELIX 16 AB7 LEU A 342 GLY A 346 5 5 HELIX 17 AB8 ASP A 350 GLN A 356 1 7 HELIX 18 AB9 PRO A 357 GLY A 361 5 5 HELIX 19 AC1 ASN A 380 GLY A 393 1 14 SHEET 1 AA1 8 ILE A 53 ALA A 56 0 SHEET 2 AA1 8 ALA A 43 ASN A 48 -1 N ALA A 43 O LEU A 55 SHEET 3 AA1 8 VAL A 29 ASP A 36 -1 N ILE A 34 O SER A 46 SHEET 4 AA1 8 ILE A 17 ASP A 23 -1 N VAL A 21 O LEU A 30 SHEET 5 AA1 8 VAL A 6 CYS A 12 -1 N ASN A 11 O LYS A 18 SHEET 6 AA1 8 VAL A 80 ILE A 87 1 O GLY A 84 N ILE A 10 SHEET 7 AA1 8 ARG A 137 PHE A 142 1 O VAL A 141 N ILE A 87 SHEET 8 AA1 8 VAL A 98 ILE A 99 -1 N VAL A 98 O ALA A 140 SHEET 1 AA2 6 GLN A 217 THR A 221 0 SHEET 2 AA2 6 ALA A 208 ARG A 214 -1 N ALA A 212 O VAL A 219 SHEET 3 AA2 6 GLY A 198 LEU A 204 -1 N LEU A 199 O VAL A 213 SHEET 4 AA2 6 GLY A 320 THR A 324 1 O ILE A 322 N ALA A 202 SHEET 5 AA2 6 ILE A 373 VAL A 376 1 O ALA A 375 N PHE A 323 SHEET 6 AA2 6 ARG A 363 ILE A 364 -1 N ARG A 363 O VAL A 376 CISPEP 1 ASN A 48 GLY A 49 0 0.76 SITE 1 AC1 15 HIS A 175 HIS A 203 GLY A 205 ASN A 206 SITE 2 AC1 15 GLY A 207 ASP A 278 LEU A 279 ARG A 280 SITE 3 AC1 15 GLU A 283 GLY A 326 ILE A 327 ASN A 330 SITE 4 AC1 15 PPI A 504 HOH A 627 HOH A 688 SITE 1 AC2 5 ARG A 306 HIS A 307 GLY A 310 HOH A 607 SITE 2 AC2 5 HOH A 674 SITE 1 AC3 2 THR A 255 LEU A 256 SITE 1 AC4 5 PHE A 174 MET A 223 PRO A 227 ARG A 236 SITE 2 AC4 5 ANP A 501 CRYST1 110.960 110.960 66.440 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009012 0.005203 0.000000 0.00000 SCALE2 0.000000 0.010406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015051 0.00000