HEADER TRANSFERASE/TRANSFERASE INHIBITOR 05-JAN-15 4XHK TITLE PIM1 KINASE IN COMPLEX WITH COMPOUND 1S COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUES 92-404; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MARCOTTE,L.F.SILVIAN REVDAT 2 27-SEP-23 4XHK 1 SOURCE JRNL REMARK REVDAT 1 11-FEB-15 4XHK 0 JRNL AUTH A.ISHCHENKO,L.ZHANG,J.Y.LE BRAZIDEC,J.FAN,J.H.CHONG, JRNL AUTH 2 A.HINGWAY,A.RADITSIS,L.SINGH,B.ELENBAAS,V.S.HONG,D.MARCOTTE, JRNL AUTH 3 L.SILVIAN,I.ENYEDY,J.CHAO JRNL TITL STRUCTURE-BASED DESIGN OF LOW-NANOMOLAR PIM KINASE JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 474 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 25575657 JRNL DOI 10.1016/J.BMCL.2014.12.041 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2302 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2149 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3125 ; 2.114 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4927 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;32.612 ;23.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;12.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2580 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 2.667 ; 2.243 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1077 ; 2.657 ; 2.240 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 3.439 ; 3.334 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6270 40.1970 1.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0340 REMARK 3 T33: 0.0218 T12: -0.0080 REMARK 3 T13: -0.0112 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4584 L22: 0.5195 REMARK 3 L33: 0.6964 L12: 0.2084 REMARK 3 L13: -0.0827 L23: -0.1777 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.0284 S13: -0.0049 REMARK 3 S21: -0.0170 S22: -0.0476 S23: -0.0075 REMARK 3 S31: 0.0498 S32: -0.0583 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33796 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1XWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PH 5.5, 0.2M NACL, 1.5M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.84800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.92400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.38600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.46200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 ILE B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 HIS B 11 REMARK 465 LEU B 12 REMARK 465 ARG B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 PRO B 16 REMARK 465 CYS B 17 REMARK 465 ASN B 18 REMARK 465 ASP B 19 REMARK 465 LEU B 20 REMARK 465 HIS B 21 REMARK 465 ALA B 22 REMARK 465 THR B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 ALA B 26 REMARK 465 PRO B 27 REMARK 465 GLY B 28 REMARK 465 LYS B 29 REMARK 465 GLU B 30 REMARK 465 LYS B 31 REMARK 465 PRO B 81 REMARK 465 ASN B 82 REMARK 465 GLY B 83 REMARK 465 THR B 84 REMARK 465 SER B 306 REMARK 465 LEU B 307 REMARK 465 SER B 308 REMARK 465 PRO B 309 REMARK 465 GLY B 310 REMARK 465 PRO B 311 REMARK 465 SER B 312 REMARK 465 LYS B 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 SER B 36 OG REMARK 470 SER B 98 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 140 O HOH B 706 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 565 O HOH B 683 6554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 262 CD GLU B 262 OE1 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU B 152 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG B 179 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 250 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 167 45.99 -148.16 REMARK 500 ASP B 186 73.24 62.73 REMARK 500 ASP B 202 24.82 -144.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YR B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X7Q RELATED DB: PDB DBREF 4XHK B 1 313 UNP P11309 PIM1_HUMAN 92 404 SEQADV 4XHK GLY B -1 UNP P11309 EXPRESSION TAG SEQADV 4XHK PRO B 0 UNP P11309 EXPRESSION TAG SEQRES 1 B 315 GLY PRO MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS SEQRES 2 B 315 LEU ARG ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS SEQRES 3 B 315 LEU ALA PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN SEQRES 4 B 315 TYR GLN VAL GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SEQRES 5 B 315 SER VAL TYR SER GLY ILE ARG VAL SER ASP ASN LEU PRO SEQRES 6 B 315 VAL ALA ILE LYS HIS VAL GLU LYS ASP ARG ILE SER ASP SEQRES 7 B 315 TRP GLY GLU LEU PRO ASN GLY THR ARG VAL PRO MET GLU SEQRES 8 B 315 VAL VAL LEU LEU LYS LYS VAL SER SER GLY PHE SER GLY SEQRES 9 B 315 VAL ILE ARG LEU LEU ASP TRP PHE GLU ARG PRO ASP SER SEQRES 10 B 315 PHE VAL LEU ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP SEQRES 11 B 315 LEU PHE ASP PHE ILE THR GLU ARG GLY ALA LEU GLN GLU SEQRES 12 B 315 GLU LEU ALA ARG SER PHE PHE TRP GLN VAL LEU GLU ALA SEQRES 13 B 315 VAL ARG HIS CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP SEQRES 14 B 315 ILE LYS ASP GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY SEQRES 15 B 315 GLU LEU LYS LEU ILE ASP PHE GLY SER GLY ALA LEU LEU SEQRES 16 B 315 LYS ASP THR VAL TYR THR ASP PHE ASP GLY THR ARG VAL SEQRES 17 B 315 TYR SER PRO PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS SEQRES 18 B 315 GLY ARG SER ALA ALA VAL TRP SER LEU GLY ILE LEU LEU SEQRES 19 B 315 TYR ASP MET VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP SEQRES 20 B 315 GLU GLU ILE ILE ARG GLY GLN VAL PHE PHE ARG GLN ARG SEQRES 21 B 315 VAL SER SEP GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU SEQRES 22 B 315 ALA LEU ARG PRO SER ASP ARG PRO THR PHE GLU GLU ILE SEQRES 23 B 315 GLN ASN HIS PRO TRP MET GLN ASP VAL LEU LEU PRO GLN SEQRES 24 B 315 GLU THR ALA GLU ILE HIS LEU HIS SER LEU SER PRO GLY SEQRES 25 B 315 PRO SER LYS MODRES 4XHK SEP B 261 SER MODIFIED RESIDUE HET SEP B 261 10 HET 3YR B 401 28 HETNAM SEP PHOSPHOSERINE HETNAM 3YR 2-(2,6-DIFLUOROPHENYL)-N-{4-[(3S)-PYRROLIDIN-3- HETNAM 2 3YR YLOXY]PYRIDIN-3-YL}-1,3-THIAZOLE-4-CARBOXAMIDE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 3YR C19 H16 F2 N4 O2 S FORMUL 3 HOH *267(H2 O) HELIX 1 AA1 PRO B 33 GLN B 37 1 5 HELIX 2 AA2 ASP B 72 ILE B 74 5 3 HELIX 3 AA3 MET B 88 SER B 97 1 10 HELIX 4 AA4 LEU B 129 GLY B 137 1 9 HELIX 5 AA5 GLN B 140 CYS B 161 1 22 HELIX 6 AA6 LYS B 169 GLU B 171 5 3 HELIX 7 AA7 THR B 204 SER B 208 5 5 HELIX 8 AA8 PRO B 209 HIS B 216 1 8 HELIX 9 AA9 HIS B 219 GLY B 238 1 20 HELIX 10 AB1 HIS B 244 GLY B 251 1 8 HELIX 11 AB2 SER B 260 LEU B 271 1 12 HELIX 12 AB3 ARG B 274 ARG B 278 5 5 HELIX 13 AB4 THR B 280 HIS B 287 1 8 HELIX 14 AB5 PRO B 288 GLN B 291 5 4 HELIX 15 AB6 LEU B 295 LEU B 304 1 10 SHEET 1 AA1 5 TYR B 38 GLY B 47 0 SHEET 2 AA1 5 GLY B 50 ARG B 57 -1 O VAL B 52 N LEU B 44 SHEET 3 AA1 5 PRO B 63 GLU B 70 -1 O HIS B 68 N SER B 51 SHEET 4 AA1 5 SER B 115 GLU B 121 -1 O LEU B 120 N ALA B 65 SHEET 5 AA1 5 LEU B 106 GLU B 111 -1 N LEU B 107 O ILE B 119 SHEET 1 AA2 2 TRP B 77 GLY B 78 0 SHEET 2 AA2 2 VAL B 86 PRO B 87 -1 O VAL B 86 N GLY B 78 SHEET 1 AA3 3 VAL B 126 ASP B 128 0 SHEET 2 AA3 3 ILE B 173 ASP B 176 -1 O ILE B 175 N GLN B 127 SHEET 3 AA3 3 GLU B 181 LEU B 184 -1 O GLU B 181 N ASP B 176 SHEET 1 AA4 2 VAL B 163 LEU B 164 0 SHEET 2 AA4 2 ALA B 191 LEU B 192 -1 O ALA B 191 N LEU B 164 LINK C SER B 260 N SEP B 261 1555 1555 1.34 LINK C SEP B 261 N GLU B 262 1555 1555 1.33 CISPEP 1 GLU B 124 PRO B 125 0 -0.47 SITE 1 AC1 13 PHE B 49 ALA B 65 LYS B 67 LEU B 120 SITE 2 AC1 13 GLU B 121 ARG B 122 VAL B 126 LEU B 174 SITE 3 AC1 13 ILE B 185 ASP B 186 HOH B 585 HOH B 645 SITE 4 AC1 13 HOH B 685 CRYST1 96.990 96.990 80.772 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010310 0.005953 0.000000 0.00000 SCALE2 0.000000 0.011905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012381 0.00000