HEADER CELL ADHESION 06-JAN-15 4XHZ TITLE CRYSTAL STRUCTURE OF HUMAN PROTOCADHERIN-15 EC8-10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-15; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCDH15, USH1F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR R.ARAYA-SECCHI,M.SOTOMAYOR REVDAT 6 27-SEP-23 4XHZ 1 LINK REVDAT 5 18-DEC-19 4XHZ 1 REMARK REVDAT 4 06-SEP-17 4XHZ 1 REMARK REVDAT 3 21-DEC-16 4XHZ 1 JRNL REVDAT 2 23-NOV-16 4XHZ 1 JRNL REVDAT 1 21-SEP-16 4XHZ 0 JRNL AUTH R.ARAYA-SECCHI,B.L.NEEL,M.SOTOMAYOR JRNL TITL AN ELASTIC ELEMENT IN THE PROTOCADHERIN-15 TIP LINK OF THE JRNL TITL 2 INNER EAR. JRNL REF NAT COMMUN V. 7 13458 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27857071 JRNL DOI 10.1038/NCOMMS13458 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 136.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2654 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3633 ; 1.247 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ;10.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.934 ;24.530 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;15.358 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.370 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2035 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1080 ; 0.238 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1868 ; 0.337 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.145 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): 11 ; 0.112 ; 0.500 REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 5.319 ; 5.402 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1662 ; 7.374 ; 8.095 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 7.443 ; 5.682 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1971 ; 9.617 ; 8.353 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 795 A 898 REMARK 3 RESIDUE RANGE : A 2002 A 2003 REMARK 3 ORIGIN FOR THE GROUP (A): 181.6435 315.6607 129.9337 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.1699 REMARK 3 T33: 0.2171 T12: 0.0003 REMARK 3 T13: -0.0060 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 1.3762 L22: 2.5581 REMARK 3 L33: 2.9487 L12: -1.2172 REMARK 3 L13: 1.9851 L23: -1.8291 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: -0.0128 S13: -0.2522 REMARK 3 S21: -0.1778 S22: 0.3703 S23: 0.1699 REMARK 3 S31: -0.0175 S32: 0.0455 S33: -0.3109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 899 A 1009 REMARK 3 RESIDUE RANGE : A 2001 A 2001 REMARK 3 ORIGIN FOR THE GROUP (A): 219.1037 287.8975 139.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.1535 REMARK 3 T33: 0.0791 T12: 0.0671 REMARK 3 T13: -0.0192 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 2.5587 L22: 1.2189 REMARK 3 L33: 0.8786 L12: -1.3215 REMARK 3 L13: 0.7976 L23: 0.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: 0.0253 S13: -0.0046 REMARK 3 S21: -0.1187 S22: 0.0714 S23: 0.1058 REMARK 3 S31: -0.3079 S32: 0.0933 S33: 0.1243 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1010 A 1112 REMARK 3 ORIGIN FOR THE GROUP (A): 244.4357 287.4404 165.7406 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.1329 REMARK 3 T33: 0.1546 T12: -0.0372 REMARK 3 T13: -0.0254 T23: -0.0771 REMARK 3 L TENSOR REMARK 3 L11: 1.5544 L22: 0.3782 REMARK 3 L33: 3.5759 L12: 0.6844 REMARK 3 L13: -0.1402 L23: 0.4452 REMARK 3 S TENSOR REMARK 3 S11: 0.2246 S12: 0.0721 S13: 0.0509 REMARK 3 S21: 0.0711 S22: 0.0634 S23: -0.0280 REMARK 3 S31: -0.0790 S32: 0.0118 S33: -0.2880 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1113 A 1127 REMARK 3 ORIGIN FOR THE GROUP (A): 242.5591 292.0895 198.6684 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.4626 REMARK 3 T33: 0.0435 T12: -0.1632 REMARK 3 T13: -0.0154 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.1113 L22: 3.9016 REMARK 3 L33: 0.7526 L12: 0.6257 REMARK 3 L13: -0.2804 L23: -1.6924 REMARK 3 S TENSOR REMARK 3 S11: 0.1569 S12: -0.0360 S13: 0.0116 REMARK 3 S21: 0.7346 S22: -0.0869 S23: 0.1822 REMARK 3 S31: -0.3607 S32: 0.1247 S33: -0.0700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 136.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UBH, 1EDH, 3Q2W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES (PH6.5), 1.6M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.44900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.44900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.44900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 71.44900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.44900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.44900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2117 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 794 REMARK 465 HIS A 1128 REMARK 465 HIS A 1129 REMARK 465 HIS A 1130 REMARK 465 HIS A 1131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 885 C - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 867 -1.65 83.64 REMARK 500 PRO A 885 138.67 -21.64 REMARK 500 ILE A 924 -54.28 -121.54 REMARK 500 PRO A 934 122.68 -35.23 REMARK 500 THR A 978 -12.63 95.19 REMARK 500 ASP A 989 -163.40 -100.48 REMARK 500 PRO A 993 -176.25 -41.67 REMARK 500 ASN A1117 50.99 -115.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 884 PRO A 885 -84.42 REMARK 500 GLU A 992 PRO A 993 -59.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 992 -10.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 809 OE2 REMARK 620 2 GLU A 862 OE1 74.1 REMARK 620 3 GLU A 862 OE2 101.6 48.1 REMARK 620 4 ASP A 897 OD1 76.7 111.9 81.0 REMARK 620 5 MET A 898 O 88.5 151.2 160.6 85.3 REMARK 620 6 ASP A 900 OD1 82.8 81.1 123.4 151.2 73.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 809 OE1 REMARK 620 2 ASP A 860 OD1 80.3 REMARK 620 3 GLU A 862 OE1 88.8 96.3 REMARK 620 4 ASP A 900 OD2 88.7 156.5 104.3 REMARK 620 5 HOH A2168 O 63.0 80.4 151.8 76.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 899 OD1 REMARK 620 2 TYR A 901 O 95.2 REMARK 620 3 ASP A 931 OD1 136.5 105.8 REMARK 620 4 ASP A 931 OD2 165.5 91.8 52.3 REMARK 620 5 ASP A 933 OD2 74.2 84.2 70.7 119.2 REMARK 620 6 ALA A 939 O 82.9 177.0 77.1 89.6 97.4 REMARK 620 7 ASP A 989 OD2 76.1 94.3 137.5 90.8 149.9 83.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 2004 DBREF 4XHZ A 795 1123 UNP Q96QU1 PCD15_HUMAN 816 1144 SEQADV 4XHZ MET A 794 UNP Q96QU1 CLONING ARTIFACT SEQADV 4XHZ LEU A 1124 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ GLU A 1125 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ HIS A 1126 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ HIS A 1127 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ HIS A 1128 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ HIS A 1129 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ HIS A 1130 UNP Q96QU1 EXPRESSION TAG SEQADV 4XHZ HIS A 1131 UNP Q96QU1 EXPRESSION TAG SEQRES 1 A 338 MET SER PRO VAL PHE THR ASN SER THR TYR THR VAL LEU SEQRES 2 A 338 VAL GLU GLU ASN LEU PRO ALA GLY THR THR ILE LEU GLN SEQRES 3 A 338 ILE GLU ALA LYS ASP VAL ASP LEU GLY ALA ASN VAL SER SEQRES 4 A 338 TYR ARG ILE ARG SER PRO GLU VAL LYS HIS PHE PHE ALA SEQRES 5 A 338 LEU HIS PRO PHE THR GLY GLU LEU SER LEU LEU ARG SER SEQRES 6 A 338 LEU ASP TYR GLU ALA PHE PRO ASP GLN GLU ALA SER ILE SEQRES 7 A 338 THR PHE LEU VAL GLU ALA PHE ASP ILE TYR GLY THR MET SEQRES 8 A 338 PRO PRO GLY ILE ALA THR VAL THR VAL ILE VAL LYS ASP SEQRES 9 A 338 MET ASN ASP TYR PRO PRO VAL PHE SER LYS ARG ILE TYR SEQRES 10 A 338 LYS GLY MET VAL ALA PRO ASP ALA VAL LYS GLY THR PRO SEQRES 11 A 338 ILE THR THR VAL TYR ALA GLU ASP ALA ASP PRO PRO GLY SEQRES 12 A 338 LEU PRO ALA SER ARG VAL ARG TYR ARG VAL ASP ASP VAL SEQRES 13 A 338 GLN PHE PRO TYR PRO ALA SER ILE PHE GLU VAL GLU GLU SEQRES 14 A 338 ASP SER GLY ARG VAL ILE THR ARG VAL ASN LEU ASN GLU SEQRES 15 A 338 GLU PRO THR THR ILE PHE LYS LEU VAL VAL VAL ALA PHE SEQRES 16 A 338 ASP ASP GLY GLU PRO VAL MET SER SER SER ALA THR VAL SEQRES 17 A 338 LYS ILE LEU VAL LEU HIS PRO GLY GLU ILE PRO ARG PHE SEQRES 18 A 338 THR GLN GLU GLU TYR ARG PRO PRO PRO VAL SER GLU LEU SEQRES 19 A 338 ALA THR LYS GLY THR MET VAL GLY VAL ILE SER ALA ALA SEQRES 20 A 338 ALA ILE ASN GLN SER ILE VAL TYR SER ILE VAL SER GLY SEQRES 21 A 338 ASN GLU GLU ASP THR PHE GLY ILE ASN ASN ILE THR GLY SEQRES 22 A 338 VAL ILE TYR VAL ASN GLY PRO LEU ASP TYR GLU THR ARG SEQRES 23 A 338 THR SER TYR VAL LEU ARG VAL GLN ALA ASP SER LEU GLU SEQRES 24 A 338 VAL VAL LEU ALA ASN LEU ARG VAL PRO SER LYS SER ASN SEQRES 25 A 338 THR ALA LYS VAL TYR ILE GLU ILE GLN ASP GLU ASN ASN SEQRES 26 A 338 HIS PRO PRO VAL PHE LEU GLU HIS HIS HIS HIS HIS HIS HET CA A2001 1 HET CA A2002 1 HET CA A2003 1 HET CL A2004 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CA 3(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *68(H2 O) HELIX 1 AA1 SER A 837 LYS A 841 5 5 HELIX 2 AA2 ASP A 860 PHE A 864 5 5 HELIX 3 AA3 LEU A 937 ARG A 941 5 5 HELIX 4 AA4 PHE A 951 ILE A 957 1 7 HELIX 5 AA5 HIS A 1007 ILE A 1011 5 5 HELIX 6 AA6 LEU A 1091 LEU A 1095 1 5 SHEET 1 AA1 2 VAL A 797 PHE A 798 0 SHEET 2 AA1 2 ALA A 822 LYS A 823 -1 O LYS A 823 N VAL A 797 SHEET 1 AA2 4 THR A 802 GLU A 808 0 SHEET 2 AA2 4 GLY A 887 LYS A 896 1 O ILE A 894 N VAL A 805 SHEET 3 AA2 4 SER A 870 PHE A 878 -1 N PHE A 873 O VAL A 891 SHEET 4 AA2 4 SER A 832 ILE A 835 -1 N ARG A 834 O GLU A 876 SHEET 1 AA3 3 THR A 816 GLN A 819 0 SHEET 2 AA3 3 GLU A 852 LEU A 855 -1 O LEU A 853 N LEU A 818 SHEET 3 AA3 3 PHE A 844 LEU A 846 -1 N ALA A 845 O SER A 854 SHEET 1 AA4 2 PRO A 903 PHE A 905 0 SHEET 2 AA4 2 ALA A 929 ASP A 931 -1 O GLU A 930 N VAL A 904 SHEET 1 AA5 4 ILE A 909 VAL A 914 0 SHEET 2 AA5 4 SER A 996 VAL A1005 1 O LYS A1002 N TYR A 910 SHEET 3 AA5 4 ILE A 980 PHE A 988 -1 N LEU A 983 O VAL A1001 SHEET 4 AA5 4 ARG A 943 ASP A 947 -1 N ARG A 945 O VAL A 986 SHEET 1 AA6 3 PRO A 923 THR A 926 0 SHEET 2 AA6 3 ARG A 966 THR A 969 -1 O VAL A 967 N THR A 925 SHEET 3 AA6 3 PHE A 958 VAL A 960 -1 N GLU A 959 O ILE A 968 SHEET 1 AA7 2 ARG A1013 PHE A1014 0 SHEET 2 AA7 2 ALA A1039 ALA A1040 -1 O ALA A1040 N ARG A1013 SHEET 1 AA8 3 GLU A1018 TYR A1019 0 SHEET 2 AA8 3 THR A1106 GLN A1114 1 O LYS A1108 N TYR A1019 SHEET 3 AA8 3 VAL A1024 SER A1025 1 N VAL A1024 O GLN A1114 SHEET 1 AA9 4 GLU A1018 TYR A1019 0 SHEET 2 AA9 4 THR A1106 GLN A1114 1 O LYS A1108 N TYR A1019 SHEET 3 AA9 4 SER A1081 SER A1090 -1 N VAL A1086 O ALA A1107 SHEET 4 AA9 4 ILE A1046 SER A1052 -1 N VAL A1051 O ARG A1085 SHEET 1 AB1 3 MET A1033 VAL A1036 0 SHEET 2 AB1 3 VAL A1067 VAL A1070 -1 O ILE A1068 N GLY A1035 SHEET 3 AB1 3 PHE A1059 ILE A1061 -1 N GLY A1060 O TYR A1069 LINK OE2 GLU A 809 CA CA A2002 1555 1555 2.61 LINK OE1 GLU A 809 CA CA A2003 1555 1555 2.77 LINK OD1 ASP A 860 CA CA A2003 1555 1555 2.37 LINK OE1 GLU A 862 CA CA A2002 1555 1555 2.84 LINK OE2 GLU A 862 CA CA A2002 1555 1555 2.52 LINK OE1 GLU A 862 CA CA A2003 1555 1555 2.33 LINK OD1 ASP A 897 CA CA A2002 1555 1555 2.28 LINK O MET A 898 CA CA A2002 1555 1555 2.33 LINK OD1 ASN A 899 CA CA A2001 1555 1555 2.40 LINK OD1 ASP A 900 CA CA A2002 1555 1555 2.28 LINK OD2 ASP A 900 CA CA A2003 1555 1555 2.29 LINK O TYR A 901 CA CA A2001 1555 1555 2.22 LINK OD1 ASP A 931 CA CA A2001 1555 1555 2.49 LINK OD2 ASP A 931 CA CA A2001 1555 1555 2.44 LINK OD2 ASP A 933 CA CA A2001 1555 1555 2.31 LINK O ALA A 939 CA CA A2001 1555 1555 2.46 LINK OD2 ASP A 989 CA CA A2001 1555 1555 2.35 LINK CA CA A2003 O HOH A2168 1555 1555 2.37 SITE 1 AC1 6 ASN A 899 TYR A 901 ASP A 931 ASP A 933 SITE 2 AC1 6 ALA A 939 ASP A 989 SITE 1 AC2 5 GLU A 809 GLU A 862 ASP A 897 MET A 898 SITE 2 AC2 5 ASP A 900 SITE 1 AC3 5 GLU A 809 ASP A 860 GLU A 862 ASP A 900 SITE 2 AC3 5 HOH A2168 SITE 1 AC4 3 VAL A 946 VAL A 960 ARG A 970 CRYST1 157.929 157.929 142.898 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006332 0.003656 0.000000 0.00000 SCALE2 0.000000 0.007312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006998 0.00000