HEADER TRANSFERASE 06-JAN-15 4XI2 TITLE CRYSTAL STRUCTURE OF AN AUTO-INHIBITED FORM OF BRUTON'S TRYROSINE TITLE 2 KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 214-659; COMPND 5 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR COMPND 6 KINASE,BPK,BRUTON TYROSINE KINASE,KINASE EMB; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BTK, BPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BAC-TO-BAC KEYWDS KINASE, PHOSPHORYLATION, AUTO-INHIBITED, B-CELL DEVELOPMENT, X-LINKED KEYWDS 2 AGAMMAGLOBULINEMIA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.VOGAN,S.C.HARRISON REVDAT 3 28-FEB-24 4XI2 1 SOURCE REMARK REVDAT 2 11-MAR-15 4XI2 1 JRNL REVDAT 1 25-FEB-15 4XI2 0 JRNL AUTH Q.WANG,E.M.VOGAN,L.M.NOCKA,C.E.ROSEN,J.A.ZORN,S.C.HARRISON, JRNL AUTH 2 J.KURIYAN JRNL TITL AUTOINHIBITION OF BRUTON'S TYROSINE KINASE (BTK) AND JRNL TITL 2 ACTIVATION BY SOLUBLE INOSITOL HEXAKISPHOSPHATE. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 25699547 JRNL DOI 10.7554/ELIFE.06074 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1839) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 30931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2792 - 7.0513 0.91 2789 163 0.2175 0.2138 REMARK 3 2 7.0513 - 5.6007 0.93 2877 150 0.2429 0.2271 REMARK 3 3 5.6007 - 4.8938 0.94 2874 134 0.2153 0.2299 REMARK 3 4 4.8938 - 4.4469 0.95 2959 158 0.1920 0.2137 REMARK 3 5 4.4469 - 4.1284 0.95 2863 155 0.1943 0.2386 REMARK 3 6 4.1284 - 3.8852 0.95 2856 175 0.2047 0.2536 REMARK 3 7 3.8852 - 3.6907 0.95 2946 153 0.2101 0.2480 REMARK 3 8 3.6907 - 3.5301 0.95 2913 174 0.2172 0.2320 REMARK 3 9 3.5301 - 3.3943 0.96 2934 135 0.2176 0.2388 REMARK 3 10 3.3943 - 3.2772 0.96 2915 188 0.2313 0.2330 REMARK 3 11 3.2772 - 3.1747 0.95 2950 138 0.2415 0.2441 REMARK 3 12 3.1747 - 3.0840 0.95 2914 157 0.2615 0.3079 REMARK 3 13 3.0840 - 3.0029 0.96 2946 141 0.2894 0.3228 REMARK 3 14 3.0029 - 2.9296 0.95 2937 128 0.3071 0.3450 REMARK 3 15 2.9296 - 2.8630 0.92 2856 129 0.3119 0.3554 REMARK 3 16 2.8630 - 2.8021 0.89 2708 144 0.3303 0.3553 REMARK 3 17 2.8021 - 2.7461 0.81 2481 91 0.3320 0.3918 REMARK 3 18 2.7461 - 2.6943 0.73 2281 108 0.3458 0.4606 REMARK 3 19 2.6943 - 2.6461 0.67 2084 113 0.3711 0.4371 REMARK 3 20 2.6461 - 2.6000 0.58 1731 96 0.3725 0.3433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3541 REMARK 3 ANGLE : 1.114 4776 REMARK 3 CHIRALITY : 0.052 501 REMARK 3 PLANARITY : 0.005 606 REMARK 3 DIHEDRAL : 17.401 1321 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 214:260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2942 63.4715 16.6940 REMARK 3 T TENSOR REMARK 3 T11: 1.0941 T22: 0.7556 REMARK 3 T33: 0.7507 T12: 0.2325 REMARK 3 T13: -0.1403 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 0.3442 L22: 0.9863 REMARK 3 L33: 0.9568 L12: 0.0629 REMARK 3 L13: 0.1019 L23: 0.1873 REMARK 3 S TENSOR REMARK 3 S11: -0.1683 S12: -0.2130 S13: -0.1182 REMARK 3 S21: 0.8030 S22: 0.1540 S23: -0.7643 REMARK 3 S31: -0.3749 S32: 0.2788 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 261:391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3217 63.8743 49.9921 REMARK 3 T TENSOR REMARK 3 T11: 2.3318 T22: 2.1183 REMARK 3 T33: 1.3161 T12: -0.1493 REMARK 3 T13: -0.3561 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: -0.9220 L22: -3.0301 REMARK 3 L33: 1.4587 L12: -0.5418 REMARK 3 L13: 1.9608 L23: -1.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.5914 S13: -0.1529 REMARK 3 S21: 0.2199 S22: -0.1051 S23: -0.2413 REMARK 3 S31: -0.3485 S32: 0.1924 S33: 0.1017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 392:657 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4973 58.7114 84.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.4986 T22: 0.8499 REMARK 3 T33: 0.7908 T12: 0.0029 REMARK 3 T13: -0.0021 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.9561 L22: 2.3540 REMARK 3 L33: 3.1530 L12: 1.5884 REMARK 3 L13: -1.4823 L23: -0.9379 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.8392 S13: 0.0092 REMARK 3 S21: 0.2868 S22: 0.0336 S23: 0.2646 REMARK 3 S31: 0.0617 S32: -0.1726 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9474 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 1.97.8 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 1.97.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP 1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIX PURIFIED DIMER PROTEIN AT 5 MG/ML REMARK 280 IN 25 MM TRIS.CL, PH 8.5, 10 MM NACL, 5 MM DTT WITH AN EQUAL REMARK 280 VOLUME OF THE PRECIPITANT SOLUTION, 100 MM TRIS.CL, PH 8.5, 200 REMARK 280 MM NA.ACETATE, 7.5 % PEG 4,000, THEN SUSPEND OVER 1 ML OF REMARK 280 PRECIPITANT SOLUTION. WEDGE SHAPED CRYSTALS GREW TO REMARK 280 APPROXIMATELY 0.1 MM ON A SIDE AFTER A PERIOD OF TWO WEEKS. REMARK 280 CRYSTALS WERE FROZEN BY FIRST TRANSFERRING THEM, IN FOUR REMARK 280 SEQUENTIAL STEPS, TO A SOLUTION OF 100 MM TRIS.CL, PH 8.5, 200 REMARK 280 MM NA.ACETATE, 15 % PEG 4,000. THIS WAS FOLLOWED BY TRANSFER IN REMARK 280 SIX SEQUENTIAL STEPS TO A SOLUTION CONTAINING 100 MM TRIS.CL, PH REMARK 280 8.5, 200 MM NA.ACETATE, 15 % PEG 4,000, 30% GLUCOSE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.87733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.75467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.75467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.87733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS SPLIT ACROSS THE ASYMMETRIC UNIT REMARK 300 (DOMAIN-SWAPPED DIMER). AUTHORS BELIEVE THAT THE BIOLOGICAL REMARK 300 ASSEMBLY IS A CRYSTALLOGRAPHIC ARTIFACT, AND IS UNRELATED TO THE REMARK 300 FUNCTIONAL STATE OF THE PROTEIN IN THE CELL. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.63200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 296 REMARK 465 GLN A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 LYS A 300 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 LYS A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 LYS A 314 REMARK 465 SER A 323 REMARK 465 THR A 324 REMARK 465 GLY A 325 REMARK 465 GLU A 326 REMARK 465 PRO A 327 REMARK 465 GLN A 328 REMARK 465 SER A 338 REMARK 465 THR A 339 REMARK 465 PRO A 340 REMARK 465 GLN A 341 REMARK 465 SER A 342 REMARK 465 GLN A 343 REMARK 465 GLU A 658 REMARK 465 SER A 659 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 286 CG SD CE REMARK 480 GLN A 293 CG CD OE1 NE2 REMARK 480 GLU A 301 CG CD OE1 OE2 REMARK 480 PHE A 320 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLN A 363 CG CD OE1 NE2 REMARK 480 LYS A 374 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG2 GLU A 292 HD12 ILE A 331 1.22 REMARK 500 HG22 ILE A 359 HE21 GLN A 363 1.34 REMARK 500 O ARG A 433 HG SER A 436 1.55 REMARK 500 HH TYR A 225 OD2 ASP A 232 1.60 REMARK 500 O ILE A 629 OG SER A 632 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG3 ARG A 332 CD1 ILE A 370 4556 0.79 REMARK 500 HG3 ARG A 332 HD11 ILE A 370 4556 0.93 REMARK 500 HG3 ARG A 332 HD13 ILE A 370 4556 0.94 REMARK 500 HG3 ARG A 332 HD12 ILE A 370 4556 1.24 REMARK 500 CG ARG A 332 HD11 ILE A 370 4556 1.51 REMARK 500 CG ARG A 332 CD1 ILE A 370 4556 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 247 160.48 178.79 REMARK 500 ALA A 272 -87.62 -3.87 REMARK 500 ASP A 274 86.80 -26.95 REMARK 500 SER A 275 -138.90 -73.13 REMARK 500 ILE A 276 -38.87 -134.28 REMARK 500 GLU A 280 -74.13 -26.29 REMARK 500 TRP A 281 -74.83 -48.09 REMARK 500 TYR A 282 125.61 -21.21 REMARK 500 LYS A 284 -124.50 44.73 REMARK 500 HIS A 285 62.94 -107.01 REMARK 500 THR A 287 170.34 -43.90 REMARK 500 LEU A 346 -83.50 -57.38 REMARK 500 ALA A 347 -54.67 -178.29 REMARK 500 ALA A 367 61.20 28.47 REMARK 500 ASN A 383 121.48 66.68 REMARK 500 PRO A 385 -176.62 -65.35 REMARK 500 LEU A 408 -51.71 -123.71 REMARK 500 THR A 410 76.44 -165.80 REMARK 500 GLN A 424 -67.00 -128.64 REMARK 500 VAL A 458 108.38 -51.27 REMARK 500 GLN A 516 51.05 30.61 REMARK 500 ARG A 520 -28.62 82.23 REMARK 500 PRO A 560 63.89 -65.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 701 DBREF 4XI2 A 214 659 UNP P35991 BTK_MOUSE 214 659 SEQRES 1 A 446 THR GLU LEU LYS LYS VAL VAL ALA LEU TYR ASP TYR MET SEQRES 2 A 446 PRO MET ASN ALA ASN ASP LEU GLN LEU ARG LYS GLY GLU SEQRES 3 A 446 GLU TYR PHE ILE LEU GLU GLU SER ASN LEU PRO TRP TRP SEQRES 4 A 446 ARG ALA ARG ASP LYS ASN GLY GLN GLU GLY TYR ILE PRO SEQRES 5 A 446 SER ASN TYR ILE THR GLU ALA GLU ASP SER ILE GLU MET SEQRES 6 A 446 TYR GLU TRP TYR SER LYS HIS MET THR ARG SER GLN ALA SEQRES 7 A 446 GLU GLN LEU LEU LYS GLN GLU GLY LYS GLU GLY GLY PHE SEQRES 8 A 446 ILE VAL ARG ASP SER SER LYS ALA GLY LYS TYR THR VAL SEQRES 9 A 446 SER VAL PHE ALA LYS SER THR GLY GLU PRO GLN GLY VAL SEQRES 10 A 446 ILE ARG HIS TYR VAL VAL CYS SER THR PRO GLN SER GLN SEQRES 11 A 446 TYR TYR LEU ALA GLU LYS HIS LEU PHE SER THR ILE PRO SEQRES 12 A 446 GLU LEU ILE ASN TYR HIS GLN HIS ASN SER ALA GLY LEU SEQRES 13 A 446 ILE SER ARG LEU LYS TYR PRO VAL SER LYS GLN ASN LYS SEQRES 14 A 446 ASN ALA PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP SEQRES 15 A 446 GLU ILE ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU SEQRES 16 A 446 GLY THR GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP SEQRES 17 A 446 ARG GLY GLN TYR ASP VAL ALA ILE LYS MET ILE ARG GLU SEQRES 18 A 446 GLY SER MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS SEQRES 19 A 446 VAL MET MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU SEQRES 20 A 446 TYR GLY VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE SEQRES 21 A 446 THR GLU TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU SEQRES 22 A 446 ARG GLU MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU SEQRES 23 A 446 GLU MET CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU SEQRES 24 A 446 GLU SER LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG SEQRES 25 A 446 ASN CYS LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER SEQRES 26 A 446 ASP PHE GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR SEQRES 27 A 446 THR SER SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER SEQRES 28 A 446 PRO PRO GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SEQRES 29 A 446 SER ASP ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE SEQRES 30 A 446 TYR SER LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SEQRES 31 A 446 SER GLU THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU SEQRES 32 A 446 TYR ARG PRO HIS LEU ALA SER GLU ARG VAL TYR THR ILE SEQRES 33 A 446 MET TYR SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO SEQRES 34 A 446 SER PHE LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET SEQRES 35 A 446 ASP GLU GLU SER HET AU A 701 1 HET AU A 702 1 HETNAM AU GOLD ION FORMUL 2 AU 2(AU 1+) HELIX 1 AA1 THR A 287 LEU A 295 1 9 HELIX 2 AA2 THR A 354 HIS A 362 1 9 HELIX 3 AA3 SER A 438 ASN A 451 1 14 HELIX 4 AA4 CYS A 481 MET A 489 1 9 HELIX 5 AA5 ARG A 490 PHE A 493 5 4 HELIX 6 AA6 GLN A 494 GLN A 496 5 3 HELIX 7 AA7 GLN A 497 LYS A 515 1 19 HELIX 8 AA8 ALA A 523 ARG A 525 5 3 HELIX 9 AA9 GLY A 541 VAL A 546 5 6 HELIX 10 AB1 ASP A 548 SER A 553 1 6 HELIX 11 AB2 PRO A 560 SER A 564 5 5 HELIX 12 AB3 PRO A 565 SER A 572 1 8 HELIX 13 AB4 SER A 575 SER A 592 1 18 HELIX 14 AB5 THR A 602 GLY A 613 1 12 HELIX 15 AB6 SER A 623 CYS A 633 1 11 HELIX 16 AB7 LYS A 637 ARG A 641 5 5 HELIX 17 AB8 SER A 643 GLU A 657 1 15 SHEET 1 AA1 4 LYS A 217 VAL A 220 0 SHEET 2 AA1 4 GLU A 240 GLU A 245 -1 O ILE A 243 N LYS A 217 SHEET 3 AA1 4 TRP A 251 ARG A 255 -1 O ARG A 253 N LEU A 244 SHEET 4 AA1 4 GLU A 261 PRO A 265 -1 O ILE A 264 N TRP A 252 SHEET 1 AA2 3 PHE A 304 ARG A 307 0 SHEET 2 AA2 3 THR A 316 ALA A 321 -1 O SER A 318 N ILE A 305 SHEET 3 AA2 3 VAL A 330 VAL A 335 -1 O VAL A 330 N ALA A 321 SHEET 1 AA3 5 LEU A 402 GLU A 407 0 SHEET 2 AA3 5 VAL A 416 TRP A 421 -1 O TYR A 418 N LYS A 406 SHEET 3 AA3 5 TYR A 425 MET A 431 -1 O ILE A 429 N LYS A 417 SHEET 4 AA3 5 PHE A 471 GLU A 475 -1 O THR A 474 N ALA A 428 SHEET 5 AA3 5 LEU A 460 CYS A 464 -1 N GLY A 462 O ILE A 473 SHEET 1 AA4 2 CYS A 527 VAL A 529 0 SHEET 2 AA4 2 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528 LINK SG CYS A 464 AU AU A 701 1555 1555 2.91 CISPEP 1 ARG A 468 PRO A 469 0 -3.57 SITE 1 AC1 3 PRO A 399 CYS A 464 PHE A 471 CRYST1 132.202 132.202 107.632 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007564 0.004367 0.000000 0.00000 SCALE2 0.000000 0.008734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009291 0.00000