HEADER TRANSCRIPTION REGULATOR 09-JAN-15 4XK4 TITLE E. COLI TRANSCRIPTIONAL REGULATOR RUTR WITH DIHYDROURACIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RUT OPERON REPRESSOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RUTR, YCDC, B1013, JW0998; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, HELIX-TURN-HELIX, TRANSCRIPTIONAL KEYWDS 3 REGULATOR, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,D.R.COOPER,I.G.SHABALIN,M.GRABOWSKI,S.C.ALMO,W.MINOR,NEW AUTHOR 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 5 27-SEP-23 4XK4 1 REMARK REVDAT 4 13-APR-22 4XK4 1 AUTHOR JRNL REVDAT 3 25-DEC-19 4XK4 1 REMARK REVDAT 2 06-SEP-17 4XK4 1 SOURCE REMARK REVDAT 1 13-MAY-15 4XK4 0 JRNL AUTH W.MINOR JRNL TITL E. COLI TRANSCRIPTIONAL REGULATOR RUTR WITH DIHYDROURACIL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 35540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2533 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.31000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : -2.29000 REMARK 3 B13 (A**2) : -1.92000 REMARK 3 B23 (A**2) : 0.74000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.363 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6301 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6168 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8550 ; 1.354 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14140 ; 1.351 ; 2.990 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 783 ; 4.989 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;39.706 ;23.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1060 ;15.122 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 982 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7026 ; 0.014 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 1425 ; 0.012 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3144 ; 1.326 ; 3.655 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3143 ; 1.326 ; 3.655 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3923 ; 2.093 ; 5.478 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3924 ; 2.093 ; 5.478 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3157 ; 1.558 ; 3.807 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3158 ; 1.558 ; 3.807 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4627 ; 2.578 ; 5.641 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7209 ; 4.030 ;29.181 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7161 ; 3.975 ;29.069 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 17 212 B 17 212 23578 0.09 0.05 REMARK 3 2 A 17 211 C 17 211 23382 0.07 0.05 REMARK 3 3 A 17 212 D 17 212 23284 0.08 0.05 REMARK 3 4 B 17 211 C 17 211 23124 0.07 0.05 REMARK 3 5 B 17 212 D 17 212 23692 0.04 0.05 REMARK 3 6 C 17 211 D 17 211 23044 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0900 -15.6240 5.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.1682 REMARK 3 T33: 0.0126 T12: -0.0626 REMARK 3 T13: 0.0182 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.7074 L22: 3.3720 REMARK 3 L33: 9.7017 L12: 0.9164 REMARK 3 L13: -1.1097 L23: 4.4604 REMARK 3 S TENSOR REMARK 3 S11: -0.1869 S12: -0.1394 S13: -0.0957 REMARK 3 S21: -0.1428 S22: 0.3876 S23: -0.1179 REMARK 3 S31: -0.1771 S32: 0.6657 S33: -0.2007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7180 -16.3200 6.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.2024 REMARK 3 T33: 0.0095 T12: -0.1300 REMARK 3 T13: 0.0335 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.2431 L22: 2.1679 REMARK 3 L33: 4.6567 L12: 0.7251 REMARK 3 L13: -1.0633 L23: -3.1766 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0274 S13: -0.0172 REMARK 3 S21: -0.0450 S22: -0.0739 S23: -0.0576 REMARK 3 S31: 0.0486 S32: 0.1250 S33: 0.0810 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6190 5.4210 1.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.1584 REMARK 3 T33: 0.0401 T12: -0.0743 REMARK 3 T13: 0.0180 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.2487 L22: 4.6057 REMARK 3 L33: 0.7059 L12: 1.5060 REMARK 3 L13: 0.3324 L23: 0.9140 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: -0.1756 S13: 0.1453 REMARK 3 S21: 0.4404 S22: -0.0256 S23: 0.2231 REMARK 3 S31: 0.0224 S32: -0.0676 S33: -0.0575 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2070 9.2470 -8.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.2143 REMARK 3 T33: 0.1576 T12: 0.0093 REMARK 3 T13: -0.1115 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.9019 L22: 3.2303 REMARK 3 L33: 1.7264 L12: 2.3637 REMARK 3 L13: 0.0964 L23: -0.5148 REMARK 3 S TENSOR REMARK 3 S11: -0.1551 S12: -0.1237 S13: 0.3930 REMARK 3 S21: -0.1791 S22: -0.0356 S23: 0.4574 REMARK 3 S31: -0.1840 S32: -0.3826 S33: 0.1907 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9260 -0.3120 -2.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.1556 REMARK 3 T33: 0.0255 T12: -0.0854 REMARK 3 T13: -0.0350 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.3262 L22: 2.9112 REMARK 3 L33: 2.0336 L12: -0.5731 REMARK 3 L13: 0.7278 L23: 0.2561 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: -0.1388 S13: 0.0944 REMARK 3 S21: 0.0991 S22: -0.0038 S23: -0.1537 REMARK 3 S31: 0.0189 S32: 0.1538 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0640 15.7140 -5.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1303 REMARK 3 T33: 0.0686 T12: -0.0473 REMARK 3 T13: -0.0259 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.4601 L22: 10.8395 REMARK 3 L33: 1.7429 L12: 0.2879 REMARK 3 L13: 0.2742 L23: -2.2067 REMARK 3 S TENSOR REMARK 3 S11: -0.1390 S12: -0.0619 S13: 0.0194 REMARK 3 S21: -0.0547 S22: 0.1669 S23: -0.2444 REMARK 3 S31: -0.2491 S32: 0.0494 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5050 -22.3770 -24.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1132 REMARK 3 T33: 0.0461 T12: -0.1020 REMARK 3 T13: 0.0526 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.7505 L22: 4.1535 REMARK 3 L33: 8.1986 L12: -0.4487 REMARK 3 L13: 0.3889 L23: -0.1685 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: 0.1751 S13: -0.1971 REMARK 3 S21: 0.0013 S22: 0.0223 S23: 0.0033 REMARK 3 S31: 0.2747 S32: 0.0729 S33: 0.2199 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2550 -7.9700 -23.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1457 REMARK 3 T33: 0.0412 T12: -0.0986 REMARK 3 T13: 0.0381 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.0933 L22: 5.9396 REMARK 3 L33: 0.5905 L12: 1.6869 REMARK 3 L13: -0.0089 L23: 1.3641 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: 0.1318 S13: -0.1068 REMARK 3 S21: -0.2106 S22: 0.2053 S23: -0.3182 REMARK 3 S31: 0.0481 S32: 0.0245 S33: -0.0387 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 103 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4650 -9.0950 -17.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.1709 REMARK 3 T33: 0.0258 T12: -0.1313 REMARK 3 T13: 0.0150 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.2937 L22: 4.0684 REMARK 3 L33: 5.1943 L12: -0.7727 REMARK 3 L13: 2.9244 L23: -1.3883 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.0109 S13: -0.0881 REMARK 3 S21: -0.3103 S22: 0.1149 S23: 0.0247 REMARK 3 S31: 0.3253 S32: -0.3032 S33: -0.0518 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0570 -11.6340 -12.9680 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.2172 REMARK 3 T33: 0.2961 T12: -0.0349 REMARK 3 T13: -0.0711 T23: 0.1150 REMARK 3 L TENSOR REMARK 3 L11: 10.5367 L22: 2.9221 REMARK 3 L33: 2.4785 L12: 5.2358 REMARK 3 L13: -0.2840 L23: -0.2808 REMARK 3 S TENSOR REMARK 3 S11: 0.5377 S12: 0.3721 S13: -0.1866 REMARK 3 S21: 0.2813 S22: -0.0573 S23: -0.2931 REMARK 3 S31: 0.4730 S32: 0.1038 S33: -0.4805 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2410 5.0620 -15.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1341 REMARK 3 T33: 0.0228 T12: -0.0837 REMARK 3 T13: -0.0215 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 3.1415 L22: 2.1604 REMARK 3 L33: 1.2665 L12: 1.2120 REMARK 3 L13: 0.1111 L23: 0.4070 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.0738 S13: -0.1264 REMARK 3 S21: -0.3219 S22: 0.0807 S23: -0.1014 REMARK 3 S31: -0.1340 S32: 0.0605 S33: -0.0151 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 198 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5770 15.1700 -15.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.1010 REMARK 3 T33: 0.0921 T12: -0.0625 REMARK 3 T13: -0.0146 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 10.5673 L22: 7.5307 REMARK 3 L33: 3.8045 L12: 7.7515 REMARK 3 L13: 1.4000 L23: 3.6060 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.0417 S13: 0.3894 REMARK 3 S21: -0.2941 S22: 0.0202 S23: 0.2647 REMARK 3 S31: -0.3274 S32: 0.0860 S33: 0.0493 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 69 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0040 -9.1700 -36.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.2131 REMARK 3 T33: 0.0164 T12: -0.1161 REMARK 3 T13: -0.0209 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.4661 L22: 3.0244 REMARK 3 L33: 4.3078 L12: 1.4712 REMARK 3 L13: 3.1611 L23: 2.3615 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0768 S13: 0.1507 REMARK 3 S21: -0.0241 S22: -0.1633 S23: 0.0584 REMARK 3 S31: -0.0772 S32: -0.1627 S33: 0.1904 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 70 C 87 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8900 -31.0920 -39.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1275 REMARK 3 T33: 0.0841 T12: -0.0791 REMARK 3 T13: -0.0880 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 1.8526 L22: 12.4016 REMARK 3 L33: 0.4471 L12: 0.6759 REMARK 3 L13: 0.4309 L23: 1.8733 REMARK 3 S TENSOR REMARK 3 S11: 0.1981 S12: -0.2458 S13: -0.2103 REMARK 3 S21: 0.4052 S22: -0.0411 S23: -0.4166 REMARK 3 S31: 0.1413 S32: -0.0239 S33: -0.1571 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 88 C 109 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3350 -34.4210 -38.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.2528 REMARK 3 T33: 0.1795 T12: -0.1612 REMARK 3 T13: -0.1110 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 3.0575 L22: 11.5534 REMARK 3 L33: 1.5402 L12: -0.7212 REMARK 3 L13: 1.0256 L23: 1.8846 REMARK 3 S TENSOR REMARK 3 S11: 0.3179 S12: -0.5742 S13: -0.1926 REMARK 3 S21: 0.8475 S22: 0.1055 S23: -0.0097 REMARK 3 S31: 0.3953 S32: -0.1066 S33: -0.4235 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 110 C 149 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5520 -28.0530 -47.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.2370 REMARK 3 T33: 0.1609 T12: -0.0991 REMARK 3 T13: -0.0450 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 2.3319 L22: 1.5934 REMARK 3 L33: 2.8644 L12: 1.4230 REMARK 3 L13: 1.2759 L23: 0.8101 REMARK 3 S TENSOR REMARK 3 S11: 0.2471 S12: -0.2032 S13: -0.5759 REMARK 3 S21: 0.0413 S22: 0.0424 S23: -0.4379 REMARK 3 S31: 0.0966 S32: 0.1900 S33: -0.2895 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 150 C 194 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7370 -30.8280 -46.7170 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.3059 REMARK 3 T33: 0.0328 T12: -0.1189 REMARK 3 T13: -0.0280 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 1.4118 L22: 2.8511 REMARK 3 L33: 1.9615 L12: 1.8646 REMARK 3 L13: 0.5741 L23: -0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.2885 S12: -0.1764 S13: -0.1032 REMARK 3 S21: 0.3085 S22: -0.0895 S23: -0.0523 REMARK 3 S31: 0.2749 S32: -0.2815 S33: -0.1990 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 195 C 212 REMARK 3 ORIGIN FOR THE GROUP (A): -27.7370 -40.3260 -44.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1933 REMARK 3 T33: 0.1527 T12: -0.1480 REMARK 3 T13: -0.0479 T23: 0.0992 REMARK 3 L TENSOR REMARK 3 L11: 4.9118 L22: 9.5214 REMARK 3 L33: 4.6002 L12: -0.2514 REMARK 3 L13: 0.9156 L23: 6.4020 REMARK 3 S TENSOR REMARK 3 S11: 0.2485 S12: -0.6571 S13: -0.5072 REMARK 3 S21: 0.5800 S22: -0.1374 S23: 0.1114 REMARK 3 S31: 0.4822 S32: -0.2565 S33: -0.1112 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 17 D 45 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3950 -5.4000 -67.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0884 REMARK 3 T33: 0.0514 T12: -0.0667 REMARK 3 T13: -0.0492 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 5.4437 L22: 6.7802 REMARK 3 L33: 3.8014 L12: 0.7736 REMARK 3 L13: -0.5033 L23: -0.6740 REMARK 3 S TENSOR REMARK 3 S11: -0.1299 S12: -0.0208 S13: 0.3079 REMARK 3 S21: -0.1525 S22: 0.0261 S23: 0.0311 REMARK 3 S31: -0.1011 S32: 0.1939 S33: 0.1037 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 46 D 72 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9710 -3.5240 -67.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1698 REMARK 3 T33: 0.0695 T12: -0.0384 REMARK 3 T13: -0.0376 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 6.4795 L22: 7.1984 REMARK 3 L33: 0.4896 L12: 0.2335 REMARK 3 L13: 1.6108 L23: 0.2475 REMARK 3 S TENSOR REMARK 3 S11: -0.3488 S12: 0.1956 S13: 0.2702 REMARK 3 S21: 0.1392 S22: 0.2689 S23: 0.4999 REMARK 3 S31: -0.1479 S32: 0.0007 S33: 0.0799 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 73 D 99 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5880 -31.2960 -63.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1967 REMARK 3 T33: 0.0173 T12: -0.1037 REMARK 3 T13: -0.0386 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.6259 L22: 9.0860 REMARK 3 L33: 1.6520 L12: 2.4603 REMARK 3 L13: 0.9321 L23: -0.4906 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0409 S13: 0.0763 REMARK 3 S21: -0.5810 S22: 0.0675 S23: 0.2642 REMARK 3 S31: 0.1858 S32: -0.3635 S33: -0.0963 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 100 D 129 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5620 -18.4520 -59.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.1805 REMARK 3 T33: 0.0213 T12: -0.0602 REMARK 3 T13: 0.0019 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.5489 L22: 2.9835 REMARK 3 L33: 4.2144 L12: 0.0046 REMARK 3 L13: -0.9600 L23: 0.5002 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: 0.0452 S13: 0.2204 REMARK 3 S21: -0.2276 S22: 0.0397 S23: -0.0509 REMARK 3 S31: -0.1605 S32: -0.2308 S33: -0.0849 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 130 D 159 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7230 -30.4300 -54.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.5082 REMARK 3 T33: 0.2551 T12: -0.2072 REMARK 3 T13: -0.0242 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 2.2342 L22: 4.1641 REMARK 3 L33: 1.1298 L12: 1.5853 REMARK 3 L13: -0.8208 L23: -1.6045 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.1919 S13: 0.1945 REMARK 3 S21: -0.0973 S22: -0.0598 S23: 0.7185 REMARK 3 S31: 0.1545 S32: -0.3659 S33: -0.0950 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 160 D 212 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9030 -33.9360 -57.2930 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.2117 REMARK 3 T33: 0.0746 T12: -0.0988 REMARK 3 T13: -0.0298 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.9198 L22: 1.9873 REMARK 3 L33: 1.8469 L12: 1.4090 REMARK 3 L13: -0.1372 L23: -0.3827 REMARK 3 S TENSOR REMARK 3 S11: 0.1794 S12: -0.0391 S13: -0.2484 REMARK 3 S21: -0.0811 S22: -0.0150 S23: -0.3017 REMARK 3 S31: 0.3419 S32: -0.2079 S33: -0.1644 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4JYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 NL OF 10 MG/ML PROTEIN IN 10 MM REMARK 280 HEPES PH 7.5, 500 MM NACL, 5 MM DIHYDROURACIL WAS MIXED WITH 200 REMARK 280 NL 50 MM AMMONIUM SLUFATE, 50 MM BIS-TRIS, PH 6.5, 30% (V/V) REMARK 280 PENTAERYTHIRTOL ETHOXYLATE AND SUSPENDED OVER A RESERVOIR OF REMARK 280 1.5M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 LYS B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 SER B 13 REMARK 465 ARG B 14 REMARK 465 ALA B 15 REMARK 465 VAL B 16 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 GLY C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 LYS C 7 REMARK 465 THR C 8 REMARK 465 THR C 9 REMARK 465 GLY C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 SER C 13 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLN D 3 REMARK 465 GLY D 4 REMARK 465 ALA D 5 REMARK 465 VAL D 6 REMARK 465 LYS D 7 REMARK 465 THR D 8 REMARK 465 THR D 9 REMARK 465 GLY D 10 REMARK 465 LYS D 11 REMARK 465 ARG D 12 REMARK 465 SER D 13 REMARK 465 ARG D 14 REMARK 465 ALA D 15 REMARK 465 VAL D 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CE NZ REMARK 470 GLU A 86 CD OE1 OE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 GLU B 46 CD OE1 OE2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 ARG B 71 CD NE CZ NH1 NH2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ARG B 203 CZ NH1 NH2 REMARK 470 ARG C 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 470 ARG C 71 NE CZ NH1 NH2 REMARK 470 GLU C 86 CG CD OE1 OE2 REMARK 470 ASP C 87 CG OD1 OD2 REMARK 470 VAL C 149 CG1 CG2 REMARK 470 LYS C 150 CG CD CE NZ REMARK 470 LYS C 153 CG CD CE NZ REMARK 470 ARG C 189 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 203 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 LYS D 52 CE NZ REMARK 470 ILE D 76 CG1 CG2 CD1 REMARK 470 ASP D 87 CG OD1 OD2 REMARK 470 LYS D 150 CG CD CE NZ REMARK 470 LYS D 153 CD CE NZ REMARK 470 GLU D 191 CG CD OE1 OE2 REMARK 470 GLN D 196 CG CD OE1 NE2 REMARK 470 GLU D 199 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 106 CG - CD - NE ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG D 113 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 113 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 15 63.99 -167.85 REMARK 500 SER C 17 -106.95 85.89 REMARK 500 PRO C 156 98.09 -68.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 457 DISTANCE = 6.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUC A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUC B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUC C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUC D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JYK RELATED DB: PDB REMARK 900 4JYK CONTAINS THE SAME PROTEIN BOUND TO URACIL REMARK 900 RELATED ID: NYSGRC-490008 RELATED DB: TARGETTRACK DBREF 4XK4 A 1 212 UNP P0ACU2 RUTR_ECOLI 1 212 DBREF 4XK4 B 1 212 UNP P0ACU2 RUTR_ECOLI 1 212 DBREF 4XK4 C 1 212 UNP P0ACU2 RUTR_ECOLI 1 212 DBREF 4XK4 D 1 212 UNP P0ACU2 RUTR_ECOLI 1 212 SEQRES 1 A 212 MET THR GLN GLY ALA VAL LYS THR THR GLY LYS ARG SER SEQRES 2 A 212 ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SER ALA SEQRES 3 A 212 ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS GLY THR SEQRES 4 A 212 ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SER LYS SEQRES 5 A 212 THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU ALA LEU SEQRES 6 A 212 TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE TRP LEU SEQRES 7 A 212 ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA PRO LEU SEQRES 8 A 212 ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU GLU VAL SEQRES 9 A 212 SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE CYS MET SEQRES 10 A 212 GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP GLU LEU SEQRES 11 A 212 THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SER ALA SEQRES 12 A 212 LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU ALA PRO SEQRES 13 A 212 ILE ASP PRO GLN HIS LEU ILE PHE MET ILE TRP ALA SER SEQRES 14 A 212 THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL GLU ALA SEQRES 15 A 212 VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE PHE ASN SEQRES 16 A 212 GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE GLU GLY SEQRES 17 A 212 ILE ARG PRO ARG SEQRES 1 B 212 MET THR GLN GLY ALA VAL LYS THR THR GLY LYS ARG SER SEQRES 2 B 212 ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SER ALA SEQRES 3 B 212 ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS GLY THR SEQRES 4 B 212 ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SER LYS SEQRES 5 B 212 THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU ALA LEU SEQRES 6 B 212 TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE TRP LEU SEQRES 7 B 212 ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA PRO LEU SEQRES 8 B 212 ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU GLU VAL SEQRES 9 B 212 SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE CYS MET SEQRES 10 B 212 GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP GLU LEU SEQRES 11 B 212 THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SER ALA SEQRES 12 B 212 LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU ALA PRO SEQRES 13 B 212 ILE ASP PRO GLN HIS LEU ILE PHE MET ILE TRP ALA SER SEQRES 14 B 212 THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL GLU ALA SEQRES 15 B 212 VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE PHE ASN SEQRES 16 B 212 GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE GLU GLY SEQRES 17 B 212 ILE ARG PRO ARG SEQRES 1 C 212 MET THR GLN GLY ALA VAL LYS THR THR GLY LYS ARG SER SEQRES 2 C 212 ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SER ALA SEQRES 3 C 212 ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS GLY THR SEQRES 4 C 212 ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SER LYS SEQRES 5 C 212 THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU ALA LEU SEQRES 6 C 212 TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE TRP LEU SEQRES 7 C 212 ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA PRO LEU SEQRES 8 C 212 ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU GLU VAL SEQRES 9 C 212 SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE CYS MET SEQRES 10 C 212 GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP GLU LEU SEQRES 11 C 212 THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SER ALA SEQRES 12 C 212 LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU ALA PRO SEQRES 13 C 212 ILE ASP PRO GLN HIS LEU ILE PHE MET ILE TRP ALA SER SEQRES 14 C 212 THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL GLU ALA SEQRES 15 C 212 VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE PHE ASN SEQRES 16 C 212 GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE GLU GLY SEQRES 17 C 212 ILE ARG PRO ARG SEQRES 1 D 212 MET THR GLN GLY ALA VAL LYS THR THR GLY LYS ARG SER SEQRES 2 D 212 ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SER ALA SEQRES 3 D 212 ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS GLY THR SEQRES 4 D 212 ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SER LYS SEQRES 5 D 212 THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU ALA LEU SEQRES 6 D 212 TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE TRP LEU SEQRES 7 D 212 ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA PRO LEU SEQRES 8 D 212 ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU GLU VAL SEQRES 9 D 212 SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE CYS MET SEQRES 10 D 212 GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP GLU LEU SEQRES 11 D 212 THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SER ALA SEQRES 12 D 212 LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU ALA PRO SEQRES 13 D 212 ILE ASP PRO GLN HIS LEU ILE PHE MET ILE TRP ALA SER SEQRES 14 D 212 THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL GLU ALA SEQRES 15 D 212 VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE PHE ASN SEQRES 16 D 212 GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE GLU GLY SEQRES 17 D 212 ILE ARG PRO ARG HET DUC A 300 8 HET DUC B 300 8 HET DUC C 300 8 HET DUC D 300 8 HETNAM DUC DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE HETSYN DUC DIHYDROURACIL FORMUL 5 DUC 4(C4 H6 N2 O2) FORMUL 9 HOH *238(H2 O) HELIX 1 AA1 ALA A 18 THR A 39 1 22 HELIX 2 AA2 ARG A 40 GLY A 49 1 10 HELIX 3 AA3 SER A 51 PHE A 59 1 9 HELIX 4 AA4 SER A 61 PHE A 84 1 24 HELIX 5 AA5 ALA A 89 TYR A 108 1 20 HELIX 6 AA6 TYR A 108 ALA A 121 1 14 HELIX 7 AA7 LEU A 126 GLY A 132 1 7 HELIX 8 AA8 GLY A 132 SER A 151 1 20 HELIX 9 AA9 ASP A 158 PHE A 176 1 19 HELIX 10 AB1 PHE A 176 GLY A 185 1 10 HELIX 11 AB2 ASP A 190 ARG A 210 1 21 HELIX 12 AB3 ALA B 18 THR B 39 1 22 HELIX 13 AB4 ARG B 40 ALA B 48 1 9 HELIX 14 AB5 SER B 51 PHE B 59 1 9 HELIX 15 AB6 SER B 61 PHE B 84 1 24 HELIX 16 AB7 ALA B 89 TYR B 108 1 20 HELIX 17 AB8 TYR B 108 ALA B 121 1 14 HELIX 18 AB9 LEU B 126 GLY B 132 1 7 HELIX 19 AC1 GLY B 132 SER B 151 1 20 HELIX 20 AC2 ASP B 158 PHE B 176 1 19 HELIX 21 AC3 PHE B 176 GLY B 185 1 10 HELIX 22 AC4 ASP B 190 ARG B 210 1 21 HELIX 23 AC5 ALA C 18 THR C 39 1 22 HELIX 24 AC6 ARG C 40 GLY C 49 1 10 HELIX 25 AC7 SER C 51 PHE C 59 1 9 HELIX 26 AC8 SER C 61 PHE C 84 1 24 HELIX 27 AC9 ALA C 89 TYR C 108 1 20 HELIX 28 AD1 TYR C 108 ALA C 121 1 14 HELIX 29 AD2 LEU C 126 GLY C 132 1 7 HELIX 30 AD3 GLY C 132 SER C 151 1 20 HELIX 31 AD4 ASP C 158 PHE C 176 1 19 HELIX 32 AD5 PHE C 176 GLY C 185 1 10 HELIX 33 AD6 ASP C 190 ARG C 210 1 21 HELIX 34 AD7 ALA D 18 THR D 39 1 22 HELIX 35 AD8 ARG D 40 ALA D 48 1 9 HELIX 36 AD9 SER D 51 PHE D 59 1 9 HELIX 37 AE1 SER D 61 PHE D 84 1 24 HELIX 38 AE2 ALA D 89 TYR D 108 1 20 HELIX 39 AE3 TYR D 108 ALA D 121 1 14 HELIX 40 AE4 LEU D 126 GLY D 132 1 7 HELIX 41 AE5 GLY D 132 SER D 151 1 20 HELIX 42 AE6 ASP D 158 PHE D 176 1 19 HELIX 43 AE7 PHE D 176 GLY D 185 1 10 HELIX 44 AE8 ASP D 190 ARG D 210 1 21 SITE 1 AC1 8 LEU A 74 TRP A 77 LYS A 101 TRP A 167 SITE 2 AC1 8 GLN A 171 HOH A 401 PHE B 176 GLN B 179 SITE 1 AC2 8 PHE A 176 GLN A 179 TRP B 77 LEU B 78 SITE 2 AC2 8 LYS B 101 TRP B 167 GLN B 171 HOH B 401 SITE 1 AC3 9 LEU C 74 TRP C 77 LYS C 101 PHE C 115 SITE 2 AC3 9 TRP C 167 GLN C 171 HOH C 401 PHE D 176 SITE 3 AC3 9 GLN D 179 SITE 1 AC4 8 PHE C 176 GLN C 179 TRP D 77 LEU D 78 SITE 2 AC4 8 LYS D 101 TRP D 167 GLN D 171 HOH D 401 CRYST1 50.892 55.672 85.242 88.37 88.80 62.37 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019649 -0.010285 -0.000194 0.00000 SCALE2 0.000000 0.020274 -0.000430 0.00000 SCALE3 0.000000 0.000000 0.011737 0.00000