HEADER TRANSFERASE 13-JAN-15 4XL3 TITLE CRYSTAL STRUCTURE OF REDUCED FORM OF THIOLASE FROM CLOSTRIDIUM TITLE 2 ACETOBUTYLICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COA ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM (STRAIN EA 2018); SOURCE 3 ORGANISM_TAXID: 863638; SOURCE 4 STRAIN: EA 2018; SOURCE 5 GENE: CEA_G2880; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KIM,S.C.HA,J.W.AHN,E.J.KIM,J.H.LIM,K.J.KIM REVDAT 3 08-NOV-23 4XL3 1 REMARK REVDAT 2 14-OCT-15 4XL3 1 SHEET REVDAT 1 07-OCT-15 4XL3 0 JRNL AUTH S.KIM,Y.S.JANG,S.C.HA,J.W.AHN,E.J.KIM,J.HONG LIM,C.CHO, JRNL AUTH 2 Y.SHIN RYU,S.KUK LEE,S.Y.LEE,K.J.KIM JRNL TITL REDOX-SWITCH REGULATORY MECHANISM OF THIOLASE FROM JRNL TITL 2 CLOSTRIDIUM ACETOBUTYLICUM JRNL REF NAT COMMUN V. 6 8410 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26391388 JRNL DOI 10.1038/NCOMMS9410 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 84226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 786 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6067 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6048 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8196 ; 2.031 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13951 ; 0.944 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 816 ; 6.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;35.674 ;25.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1086 ;15.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;15.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 936 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6957 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1254 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3204 ; 2.083 ; 1.840 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3203 ; 2.083 ; 1.839 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4022 ; 2.944 ; 2.751 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4N44 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, K-CITRATE, NACL, PH 4.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 102.20800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 102.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 GLU B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 142 CD GLU A 142 OE2 0.068 REMARK 500 GLU B 177 CA GLU B 177 C 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 252 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 284 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 172 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLU B 177 CA - C - O ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU B 177 CA - C - O ANGL. DEV. = 13.9 DEGREES REMARK 500 ASP B 311 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP B 311 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 -117.67 -116.46 REMARK 500 ASN A 64 74.96 49.71 REMARK 500 VAL A 87 -127.88 50.88 REMARK 500 ARG A 133 -54.63 72.61 REMARK 500 ARG A 133 -58.15 64.81 REMARK 500 ARG A 133 -55.36 69.89 REMARK 500 ASP A 214 18.33 -143.66 REMARK 500 GLU A 317 67.40 -100.83 REMARK 500 LYS B 19 -116.94 -117.53 REMARK 500 ASN B 64 74.37 50.09 REMARK 500 VAL B 87 -127.08 53.02 REMARK 500 ARG B 133 -64.17 71.59 REMARK 500 ARG B 133 -54.68 68.12 REMARK 500 ARG B 133 -52.09 74.41 REMARK 500 MET B 134 144.43 -172.84 REMARK 500 MET B 134 144.43 -177.10 REMARK 500 ASP B 214 12.84 -141.77 REMARK 500 GLU B 317 64.76 -102.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 349 ILE A 350 -146.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1026 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1027 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 956 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 957 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 958 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 959 DISTANCE = 6.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XL2 RELATED DB: PDB REMARK 900 RELATED ID: 4XL3 RELATED DB: PDB DBREF 4XL3 A 1 392 UNP F0K5D8 F0K5D8_CLOAE 1 392 DBREF 4XL3 B 1 392 UNP F0K5D8 F0K5D8_CLOAE 1 392 SEQADV 4XL3 SER A 378 UNP F0K5D8 CYS 378 ENGINEERED MUTATION SEQADV 4XL3 LEU A 393 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 GLU A 394 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS A 395 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS A 396 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS A 397 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS A 398 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS A 399 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS A 400 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 SER B 378 UNP F0K5D8 CYS 378 ENGINEERED MUTATION SEQADV 4XL3 LEU B 393 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 GLU B 394 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS B 395 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS B 396 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS B 397 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS B 398 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS B 399 UNP F0K5D8 EXPRESSION TAG SEQADV 4XL3 HIS B 400 UNP F0K5D8 EXPRESSION TAG SEQRES 1 A 400 MET LYS GLU VAL VAL ILE ALA SER ALA VAL ARG THR ALA SEQRES 2 A 400 ILE GLY SER TYR GLY LYS SER LEU LYS ASP VAL PRO ALA SEQRES 3 A 400 VAL ASP LEU GLY ALA THR ALA ILE LYS GLU ALA VAL LYS SEQRES 4 A 400 LYS ALA GLY ILE LYS PRO GLU ASP VAL ASN GLU VAL ILE SEQRES 5 A 400 LEU GLY ASN VAL LEU GLN ALA GLY LEU GLY GLN ASN PRO SEQRES 6 A 400 ALA ARG GLN ALA SER PHE LYS ALA GLY LEU PRO VAL GLU SEQRES 7 A 400 ILE PRO ALA MET THR ILE ASN LYS VAL CYS GLY SER GLY SEQRES 8 A 400 LEU ARG THR VAL SER LEU ALA ALA GLN ILE ILE LYS ALA SEQRES 9 A 400 GLY ASP ALA ASP VAL ILE ILE ALA GLY GLY MET GLU ASN SEQRES 10 A 400 MET SER ARG ALA PRO TYR LEU ALA ASN ASN ALA ARG TRP SEQRES 11 A 400 GLY TYR ARG MET GLY ASN ALA LYS PHE VAL ASP GLU MET SEQRES 12 A 400 ILE THR ASP GLY LEU TRP ASP ALA PHE ASN ASP TYR HIS SEQRES 13 A 400 MET GLY ILE THR ALA GLU ASN ILE ALA GLU ARG TRP ASN SEQRES 14 A 400 ILE SER ARG GLU GLU GLN ASP GLU PHE ALA LEU ALA SER SEQRES 15 A 400 GLN LYS LYS ALA GLU GLU ALA ILE LYS SER GLY GLN PHE SEQRES 16 A 400 LYS ASP GLU ILE VAL PRO VAL VAL ILE LYS GLY ARG LYS SEQRES 17 A 400 GLY GLU THR VAL VAL ASP THR ASP GLU HIS PRO ARG PHE SEQRES 18 A 400 GLY SER THR ILE GLU GLY LEU ALA LYS LEU LYS PRO ALA SEQRES 19 A 400 PHE LYS LYS ASP GLY THR VAL THR ALA GLY ASN ALA SER SEQRES 20 A 400 GLY LEU ASN ASP CYS ALA ALA VAL LEU VAL ILE MET SER SEQRES 21 A 400 ALA GLU LYS ALA LYS GLU LEU GLY VAL LYS PRO LEU ALA SEQRES 22 A 400 LYS ILE VAL SER TYR GLY SER ALA GLY VAL ASP PRO ALA SEQRES 23 A 400 ILE MET GLY TYR GLY PRO PHE TYR ALA THR LYS ALA ALA SEQRES 24 A 400 ILE GLU LYS ALA GLY TRP THR VAL ASP GLU LEU ASP LEU SEQRES 25 A 400 ILE GLU SER ASN GLU ALA PHE ALA ALA GLN SER LEU ALA SEQRES 26 A 400 VAL ALA LYS ASP LEU LYS PHE ASP MET ASN LYS VAL ASN SEQRES 27 A 400 VAL ASN GLY GLY ALA ILE ALA LEU GLY HIS PRO ILE GLY SEQRES 28 A 400 ALA SER GLY ALA ARG ILE LEU VAL THR LEU VAL HIS ALA SEQRES 29 A 400 MET GLN LYS ARG ASP ALA LYS LYS GLY LEU ALA THR LEU SEQRES 30 A 400 SER ILE GLY GLY GLY GLN GLY THR ALA ILE LEU LEU GLU SEQRES 31 A 400 LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 400 MET LYS GLU VAL VAL ILE ALA SER ALA VAL ARG THR ALA SEQRES 2 B 400 ILE GLY SER TYR GLY LYS SER LEU LYS ASP VAL PRO ALA SEQRES 3 B 400 VAL ASP LEU GLY ALA THR ALA ILE LYS GLU ALA VAL LYS SEQRES 4 B 400 LYS ALA GLY ILE LYS PRO GLU ASP VAL ASN GLU VAL ILE SEQRES 5 B 400 LEU GLY ASN VAL LEU GLN ALA GLY LEU GLY GLN ASN PRO SEQRES 6 B 400 ALA ARG GLN ALA SER PHE LYS ALA GLY LEU PRO VAL GLU SEQRES 7 B 400 ILE PRO ALA MET THR ILE ASN LYS VAL CYS GLY SER GLY SEQRES 8 B 400 LEU ARG THR VAL SER LEU ALA ALA GLN ILE ILE LYS ALA SEQRES 9 B 400 GLY ASP ALA ASP VAL ILE ILE ALA GLY GLY MET GLU ASN SEQRES 10 B 400 MET SER ARG ALA PRO TYR LEU ALA ASN ASN ALA ARG TRP SEQRES 11 B 400 GLY TYR ARG MET GLY ASN ALA LYS PHE VAL ASP GLU MET SEQRES 12 B 400 ILE THR ASP GLY LEU TRP ASP ALA PHE ASN ASP TYR HIS SEQRES 13 B 400 MET GLY ILE THR ALA GLU ASN ILE ALA GLU ARG TRP ASN SEQRES 14 B 400 ILE SER ARG GLU GLU GLN ASP GLU PHE ALA LEU ALA SER SEQRES 15 B 400 GLN LYS LYS ALA GLU GLU ALA ILE LYS SER GLY GLN PHE SEQRES 16 B 400 LYS ASP GLU ILE VAL PRO VAL VAL ILE LYS GLY ARG LYS SEQRES 17 B 400 GLY GLU THR VAL VAL ASP THR ASP GLU HIS PRO ARG PHE SEQRES 18 B 400 GLY SER THR ILE GLU GLY LEU ALA LYS LEU LYS PRO ALA SEQRES 19 B 400 PHE LYS LYS ASP GLY THR VAL THR ALA GLY ASN ALA SER SEQRES 20 B 400 GLY LEU ASN ASP CYS ALA ALA VAL LEU VAL ILE MET SER SEQRES 21 B 400 ALA GLU LYS ALA LYS GLU LEU GLY VAL LYS PRO LEU ALA SEQRES 22 B 400 LYS ILE VAL SER TYR GLY SER ALA GLY VAL ASP PRO ALA SEQRES 23 B 400 ILE MET GLY TYR GLY PRO PHE TYR ALA THR LYS ALA ALA SEQRES 24 B 400 ILE GLU LYS ALA GLY TRP THR VAL ASP GLU LEU ASP LEU SEQRES 25 B 400 ILE GLU SER ASN GLU ALA PHE ALA ALA GLN SER LEU ALA SEQRES 26 B 400 VAL ALA LYS ASP LEU LYS PHE ASP MET ASN LYS VAL ASN SEQRES 27 B 400 VAL ASN GLY GLY ALA ILE ALA LEU GLY HIS PRO ILE GLY SEQRES 28 B 400 ALA SER GLY ALA ARG ILE LEU VAL THR LEU VAL HIS ALA SEQRES 29 B 400 MET GLN LYS ARG ASP ALA LYS LYS GLY LEU ALA THR LEU SEQRES 30 B 400 SER ILE GLY GLY GLY GLN GLY THR ALA ILE LEU LEU GLU SEQRES 31 B 400 LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL B 501 6 HET GOL B 502 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *786(H2 O) HELIX 1 AA1 PRO A 25 GLY A 42 1 18 HELIX 2 AA2 LYS A 44 VAL A 48 5 5 HELIX 3 AA3 ASN A 64 ALA A 73 1 10 HELIX 4 AA4 LYS A 86 CYS A 88 5 3 HELIX 5 AA5 GLY A 89 ALA A 104 1 16 HELIX 6 AA6 GLU A 142 LEU A 148 1 7 HELIX 7 AA7 MET A 157 ASN A 169 1 13 HELIX 8 AA8 SER A 171 SER A 192 1 22 HELIX 9 AA9 THR A 224 LYS A 230 1 7 HELIX 10 AB1 ALA A 261 GLY A 268 1 8 HELIX 11 AB2 ASP A 284 GLY A 289 5 6 HELIX 12 AB3 TYR A 290 GLY A 304 1 15 HELIX 13 AB4 THR A 306 LEU A 310 5 5 HELIX 14 AB5 PHE A 319 LYS A 331 1 13 HELIX 15 AB6 ASP A 333 VAL A 337 5 5 HELIX 16 AB7 GLY A 342 GLY A 347 1 6 HELIX 17 AB8 PRO A 349 ASP A 369 1 21 HELIX 18 AB9 PRO B 25 GLY B 42 1 18 HELIX 19 AC1 LYS B 44 VAL B 48 5 5 HELIX 20 AC2 ASN B 64 ALA B 73 1 10 HELIX 21 AC3 LYS B 86 CYS B 88 5 3 HELIX 22 AC4 GLY B 89 ALA B 104 1 16 HELIX 23 AC5 GLU B 142 LEU B 148 1 7 HELIX 24 AC6 MET B 157 ASN B 169 1 13 HELIX 25 AC7 SER B 171 SER B 192 1 22 HELIX 26 AC8 THR B 224 LEU B 231 1 8 HELIX 27 AC9 ALA B 261 LEU B 267 1 7 HELIX 28 AD1 ASP B 284 GLY B 289 5 6 HELIX 29 AD2 TYR B 290 GLY B 304 1 15 HELIX 30 AD3 THR B 306 LEU B 310 5 5 HELIX 31 AD4 PHE B 319 LYS B 331 1 13 HELIX 32 AD5 ASP B 333 VAL B 337 5 5 HELIX 33 AD6 GLY B 342 GLY B 347 1 6 HELIX 34 AD7 PRO B 349 ASP B 369 1 21 SHEET 1 AA114 GLY A 15 SER A 16 0 SHEET 2 AA114 ASN A 250 SER A 260 -1 O ASP A 251 N GLY A 15 SHEET 3 AA114 VAL A 109 ASN A 117 -1 N ILE A 110 O ILE A 258 SHEET 4 AA114 GLU A 50 GLY A 54 1 N ILE A 52 O ILE A 111 SHEET 5 AA114 ALA A 81 ASN A 85 1 O ILE A 84 N LEU A 53 SHEET 6 AA114 ALA B 81 ASN B 85 -1 O ASN B 85 N THR A 83 SHEET 7 AA114 GLU B 50 GLY B 54 1 N LEU B 53 O ILE B 84 SHEET 8 AA114 VAL B 109 ASN B 117 1 O ILE B 111 N ILE B 52 SHEET 9 AA114 ASN B 250 SER B 260 -1 O ILE B 258 N ILE B 110 SHEET 10 AA114 VAL B 4 THR B 12 -1 N VAL B 10 O VAL B 255 SHEET 11 AA114 ALA B 273 GLY B 282 -1 O ILE B 275 N VAL B 4 SHEET 12 AA114 GLN B 383 LYS B 391 -1 O GLU B 390 N LYS B 274 SHEET 13 AA114 LYS B 372 ILE B 379 -1 N GLY B 373 O LEU B 389 SHEET 14 AA114 LEU B 312 SER B 315 1 N GLU B 314 O LEU B 374 SHEET 1 AA210 GLY A 15 SER A 16 0 SHEET 2 AA210 ASN A 250 SER A 260 -1 O ASP A 251 N GLY A 15 SHEET 3 AA210 VAL A 109 ASN A 117 -1 N ILE A 110 O ILE A 258 SHEET 4 AA210 GLU A 50 GLY A 54 1 N ILE A 52 O ILE A 111 SHEET 5 AA210 ALA A 81 ASN A 85 1 O ILE A 84 N LEU A 53 SHEET 6 AA210 ALA B 81 ASN B 85 -1 O ASN B 85 N THR A 83 SHEET 7 AA210 GLU B 50 GLY B 54 1 N LEU B 53 O ILE B 84 SHEET 8 AA210 VAL B 109 ASN B 117 1 O ILE B 111 N ILE B 52 SHEET 9 AA210 ASN B 250 SER B 260 -1 O ILE B 258 N ILE B 110 SHEET 10 AA210 GLY B 15 SER B 16 -1 N GLY B 15 O ASP B 251 SHEET 1 AA311 GLY A 15 SER A 16 0 SHEET 2 AA311 ASN A 250 SER A 260 -1 O ASP A 251 N GLY A 15 SHEET 3 AA311 VAL A 109 ASN A 117 -1 N ILE A 110 O ILE A 258 SHEET 4 AA311 GLU A 50 GLY A 54 1 N ILE A 52 O ILE A 111 SHEET 5 AA311 ALA A 81 ASN A 85 1 O ILE A 84 N LEU A 53 SHEET 6 AA311 ALA B 81 ASN B 85 -1 O ASN B 85 N THR A 83 SHEET 7 AA311 GLU B 50 GLY B 54 1 N LEU B 53 O ILE B 84 SHEET 8 AA311 VAL B 109 ASN B 117 1 O ILE B 111 N ILE B 52 SHEET 9 AA311 ASN B 250 SER B 260 -1 O ILE B 258 N ILE B 110 SHEET 10 AA311 VAL B 4 THR B 12 -1 N VAL B 10 O VAL B 255 SHEET 11 AA311 ILE B 199 VAL B 200 1 O VAL B 200 N ARG B 11 SHEET 1 AA4 6 LEU A 312 SER A 315 0 SHEET 2 AA4 6 LYS A 372 ILE A 379 1 O LEU A 374 N GLU A 314 SHEET 3 AA4 6 GLN A 383 LYS A 391 -1 O LEU A 389 N GLY A 373 SHEET 4 AA4 6 ALA A 273 GLY A 282 -1 N LYS A 274 O GLU A 390 SHEET 5 AA4 6 VAL A 4 THR A 12 -1 N ILE A 6 O ALA A 273 SHEET 6 AA4 6 ASN A 250 SER A 260 -1 O ALA A 253 N THR A 12 SHEET 1 AA5 6 LEU A 312 SER A 315 0 SHEET 2 AA5 6 LYS A 372 ILE A 379 1 O LEU A 374 N GLU A 314 SHEET 3 AA5 6 GLN A 383 LYS A 391 -1 O LEU A 389 N GLY A 373 SHEET 4 AA5 6 ALA A 273 GLY A 282 -1 N LYS A 274 O GLU A 390 SHEET 5 AA5 6 VAL A 4 THR A 12 -1 N ILE A 6 O ALA A 273 SHEET 6 AA5 6 ILE A 199 VAL A 200 1 O VAL A 200 N ARG A 11 SHEET 1 AA6 4 VAL A 140 ASP A 141 0 SHEET 2 AA6 4 TYR A 123 ALA A 125 -1 N LEU A 124 O VAL A 140 SHEET 3 AA6 4 TYR B 123 ALA B 125 -1 O ALA B 125 N TYR A 123 SHEET 4 AA6 4 VAL B 140 ASP B 141 -1 O VAL B 140 N LEU B 124 SHEET 1 AA7 2 TRP A 149 ASP A 150 0 SHEET 2 AA7 2 TYR A 155 HIS A 156 -1 O TYR A 155 N ASP A 150 SHEET 1 AA8 2 VAL A 202 LYS A 205 0 SHEET 2 AA8 2 GLU A 210 VAL A 213 -1 O THR A 211 N ILE A 204 SHEET 1 AA9 2 TRP B 149 ASP B 150 0 SHEET 2 AA9 2 TYR B 155 HIS B 156 -1 O TYR B 155 N ASP B 150 SHEET 1 AB1 2 VAL B 202 LYS B 205 0 SHEET 2 AB1 2 GLU B 210 VAL B 213 -1 O THR B 211 N ILE B 204 SITE 1 AC1 5 SER A 247 GLY A 248 PHE A 319 HIS A 348 SITE 2 AC1 5 HOH A 889 SITE 1 AC2 10 ARG A 93 SER A 96 GLN A 100 TYR A 278 SITE 2 AC2 10 GLY A 279 SER A 280 LYS A 302 GLU B 50 SITE 3 AC2 10 ILE B 101 HOH B 898 SITE 1 AC3 5 GLU A 36 LYS A 40 ASP A 197 ILE A 199 SITE 2 AC3 5 HOH A 907 SITE 1 AC4 2 PHE A 235 ALA A 243 SITE 1 AC5 5 LEU B 148 SER B 247 GLY B 248 HIS B 348 SITE 2 AC5 5 HOH B 721 SITE 1 AC6 5 LYS B 40 LYS B 196 ASP B 197 ILE B 199 SITE 2 AC6 5 HOH B 633 CRYST1 204.416 54.290 73.277 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013647 0.00000