HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-JAN-15 4XLI TITLE CRYSTAL STRUCTURE OF ABL2/ARG KINASE IN COMPLEX WITH DASATINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC PROTEIN-TYROSINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.10.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ABL2; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI 5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-HTA KEYWDS TRANSFERASE, INHIBITOR, KINASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 5 27-SEP-23 4XLI 1 LINK REVDAT 4 25-DEC-19 4XLI 1 REMARK REVDAT 3 13-SEP-17 4XLI 1 SOURCE REMARK REVDAT 2 24-JUN-15 4XLI 1 JRNL REVDAT 1 01-APR-15 4XLI 0 JRNL AUTH B.H.HA,M.A.SIMPSON,A.J.KOLESKE,T.J.BOGGON JRNL TITL STRUCTURE OF THE ABL2/ARG KINASE IN COMPLEX WITH DASATINIB. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 443 2015 JRNL REFN ESSN 2053-230X JRNL PMID 25849507 JRNL DOI 10.1107/S2053230X15004793 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.99000 REMARK 3 B22 (A**2) : 14.99000 REMARK 3 B33 (A**2) : -29.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.866 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4446 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4155 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6031 ; 2.015 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9600 ; 1.057 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 7.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;36.645 ;24.010 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;15.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4892 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1002 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2110 ; 4.236 ; 4.342 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2108 ; 4.236 ; 4.342 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2628 ; 6.041 ; 6.504 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2629 ; 6.040 ; 6.504 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 4.932 ; 4.764 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2336 ; 4.931 ; 4.764 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3404 ; 7.071 ; 6.976 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5073 ; 8.913 ;35.028 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5074 ; 8.912 ;35.038 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.712 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.288 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 291 REMARK 3 RESIDUE RANGE : A 292 A 308 REMARK 3 RESIDUE RANGE : A 309 A 348 REMARK 3 RESIDUE RANGE : A 349 A 360 REMARK 3 RESIDUE RANGE : A 361 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5080 19.3702 -7.0358 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0576 REMARK 3 T33: 0.0926 T12: -0.0280 REMARK 3 T13: 0.0348 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.5516 L22: 1.4467 REMARK 3 L33: 0.7028 L12: -0.5042 REMARK 3 L13: 0.0348 L23: 0.2676 REMARK 3 S TENSOR REMARK 3 S11: -0.1086 S12: -0.2065 S13: -0.0816 REMARK 3 S21: 0.1309 S22: 0.0013 S23: 0.3056 REMARK 3 S31: 0.2162 S32: -0.1461 S33: 0.1073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 279 B 291 REMARK 3 RESIDUE RANGE : B 292 B 308 REMARK 3 RESIDUE RANGE : B 309 B 348 REMARK 3 RESIDUE RANGE : B 349 B 360 REMARK 3 RESIDUE RANGE : B 361 B 546 REMARK 3 ORIGIN FOR THE GROUP (A): 60.6017 48.1829 -18.9481 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0296 REMARK 3 T33: 0.1179 T12: -0.0176 REMARK 3 T13: -0.0414 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.6386 L22: 0.9872 REMARK 3 L33: 0.8193 L12: -0.2485 REMARK 3 L13: 0.1803 L23: 0.3486 REMARK 3 S TENSOR REMARK 3 S11: -0.0823 S12: 0.0632 S13: 0.3238 REMARK 3 S21: -0.1582 S22: -0.0512 S23: 0.1058 REMARK 3 S31: -0.1799 S32: 0.1043 S33: 0.1335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 83 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.24100 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 1.3M SODIUM REMARK 280 MALONATE, 2.5 % JEFFAMINE ED-2001, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.50667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.76000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.25333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 322 REMARK 465 THR A 323 REMARK 465 MET A 324 REMARK 465 GLU A 325 REMARK 465 GLY B 296 REMARK 465 GLY B 297 REMARK 465 GLN B 298 REMARK 465 TYR B 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 467 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 291 -90.53 -76.44 REMARK 500 LYS A 309 -7.64 -58.61 REMARK 500 VAL A 345 119.05 -39.22 REMARK 500 THR A 352 45.60 -143.26 REMARK 500 GLU A 362 157.35 -48.77 REMARK 500 ASP A 409 35.28 -148.24 REMARK 500 ASP A 427 75.22 45.19 REMARK 500 TYR A 486 53.97 25.27 REMARK 500 LYS B 320 98.24 -64.99 REMARK 500 GLU B 321 37.76 -85.67 REMARK 500 THR B 323 -62.16 -104.63 REMARK 500 LYS B 340 43.30 -140.37 REMARK 500 LEU B 353 -60.87 -101.53 REMARK 500 ARG B 408 14.17 80.41 REMARK 500 ASP B 409 50.66 -165.34 REMARK 500 ASP B 427 80.18 47.95 REMARK 500 ALA B 443 128.80 -36.76 REMARK 500 TYR B 486 59.42 27.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 398 OE1 REMARK 620 2 GLU A 398 OE2 54.6 REMARK 620 3 HIS A 536 ND1 85.0 104.2 REMARK 620 4 GLU B 398 OE2 164.0 109.5 101.0 REMARK 620 5 HIS B 536 ND1 78.8 110.2 121.6 109.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1N1 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1N1 B 600 DBREF 4XLI A 279 546 UNP F8VQH0 F8VQH0_MOUSE 279 546 DBREF 4XLI B 279 546 UNP F8VQH0 F8VQH0_MOUSE 279 546 SEQRES 1 A 268 ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET LYS SEQRES 2 A 268 HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR VAL SEQRES 3 A 268 GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS SEQRES 4 A 268 THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU SEQRES 5 A 268 LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN SEQRES 6 A 268 LEU VAL GLN LEU LEU GLY VAL CYS THR LEU GLU PRO PRO SEQRES 7 A 268 PHE TYR ILE VAL THR GLU TYR MET PRO TYR GLY ASN LEU SEQRES 8 A 268 LEU ASP TYR LEU ARG GLU CYS SER ARG GLU GLU VAL THR SEQRES 9 A 268 ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SER SEQRES 10 A 268 ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG SEQRES 11 A 268 ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS SEQRES 12 A 268 VAL VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET SEQRES 13 A 268 THR GLY ASP THR TYR THR ALA HIS ALA GLY ALA LYS PHE SEQRES 14 A 268 PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN SEQRES 15 A 268 THR PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL SEQRES 16 A 268 LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR SEQRES 17 A 268 PRO GLY ILE ASP LEU SER GLN VAL TYR ASP LEU LEU GLU SEQRES 18 A 268 LYS GLY TYR ARG MET GLU GLN PRO GLU GLY CYS PRO PRO SEQRES 19 A 268 LYS VAL TYR GLU LEU MET ARG ALA CYS TRP LYS TRP SER SEQRES 20 A 268 PRO ALA ASP ARG PRO SER PHE ALA GLU THR HIS GLN ALA SEQRES 21 A 268 PHE GLU THR MET PHE HIS ASP SER SEQRES 1 B 268 ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET LYS SEQRES 2 B 268 HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR VAL SEQRES 3 B 268 GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS SEQRES 4 B 268 THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU SEQRES 5 B 268 LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN SEQRES 6 B 268 LEU VAL GLN LEU LEU GLY VAL CYS THR LEU GLU PRO PRO SEQRES 7 B 268 PHE TYR ILE VAL THR GLU TYR MET PRO TYR GLY ASN LEU SEQRES 8 B 268 LEU ASP TYR LEU ARG GLU CYS SER ARG GLU GLU VAL THR SEQRES 9 B 268 ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SER SEQRES 10 B 268 ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG SEQRES 11 B 268 ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS SEQRES 12 B 268 VAL VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET SEQRES 13 B 268 THR GLY ASP THR TYR THR ALA HIS ALA GLY ALA LYS PHE SEQRES 14 B 268 PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN SEQRES 15 B 268 THR PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL SEQRES 16 B 268 LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR SEQRES 17 B 268 PRO GLY ILE ASP LEU SER GLN VAL TYR ASP LEU LEU GLU SEQRES 18 B 268 LYS GLY TYR ARG MET GLU GLN PRO GLU GLY CYS PRO PRO SEQRES 19 B 268 LYS VAL TYR GLU LEU MET ARG ALA CYS TRP LYS TRP SER SEQRES 20 B 268 PRO ALA ASP ARG PRO SER PHE ALA GLU THR HIS GLN ALA SEQRES 21 B 268 PHE GLU THR MET PHE HIS ASP SER HET 1N1 A 601 33 HET ZN A 602 1 HET 1N1 B 600 33 HETNAM 1N1 N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL) HETNAM 2 1N1 PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3- HETNAM 3 1N1 THIAZOLE-5-CARBOXAMIDE HETNAM ZN ZINC ION HETSYN 1N1 DASATINIB FORMUL 3 1N1 2(C22 H26 CL N7 O2 S) FORMUL 4 ZN ZN 2+ FORMUL 6 HOH *32(H2 O) HELIX 1 AA1 GLU A 284 THR A 286 5 3 HELIX 2 AA2 LYS A 309 SER A 311 5 3 HELIX 3 AA3 GLU A 327 GLU A 338 1 12 HELIX 4 AA4 ASN A 368 CYS A 376 1 9 HELIX 5 AA5 THR A 382 LYS A 403 1 22 HELIX 6 AA6 ALA A 411 ARG A 413 5 3 HELIX 7 AA7 GLU A 419 HIS A 421 5 3 HELIX 8 AA8 PRO A 448 THR A 452 5 5 HELIX 9 AA9 ALA A 453 ASN A 460 1 8 HELIX 10 AB1 SER A 463 THR A 480 1 18 HELIX 11 AB2 ASP A 490 SER A 492 5 3 HELIX 12 AB3 GLN A 493 LYS A 500 1 8 HELIX 13 AB4 PRO A 511 TRP A 522 1 12 HELIX 14 AB5 SER A 525 ARG A 529 5 5 HELIX 15 AB6 SER A 531 SER A 546 1 16 HELIX 16 AB7 GLU B 284 THR B 286 5 3 HELIX 17 AB8 LYS B 309 SER B 311 5 3 HELIX 18 AB9 GLU B 325 LYS B 337 1 13 HELIX 19 AC1 LEU B 369 CYS B 376 1 8 HELIX 20 AC2 THR B 382 LYS B 403 1 22 HELIX 21 AC3 ALA B 411 ARG B 413 5 3 HELIX 22 AC4 GLU B 419 HIS B 421 5 3 HELIX 23 AC5 PRO B 448 THR B 452 5 5 HELIX 24 AC6 ALA B 453 ASN B 460 1 8 HELIX 25 AC7 SER B 463 THR B 480 1 18 HELIX 26 AC8 ASP B 490 SER B 492 5 3 HELIX 27 AC9 GLN B 493 GLY B 501 1 9 HELIX 28 AD1 PRO B 511 TRP B 522 1 12 HELIX 29 AD2 SER B 525 ARG B 529 5 5 HELIX 30 AD3 SER B 531 ASP B 545 1 15 SHEET 1 AA1 5 ILE A 288 GLY A 295 0 SHEET 2 AA1 5 VAL A 302 TRP A 307 -1 O VAL A 302 N LEU A 294 SHEET 3 AA1 5 LEU A 312 LEU A 319 -1 O VAL A 316 N TYR A 303 SHEET 4 AA1 5 PHE A 357 GLU A 362 -1 O THR A 361 N ALA A 315 SHEET 5 AA1 5 LEU A 347 CYS A 351 -1 N LEU A 348 O VAL A 360 SHEET 1 AA2 2 PHE A 405 ILE A 406 0 SHEET 2 AA2 2 ARG A 432 LEU A 433 -1 O ARG A 432 N ILE A 406 SHEET 1 AA3 2 CYS A 415 VAL A 417 0 SHEET 2 AA3 2 VAL A 423 VAL A 425 -1 O LYS A 424 N LEU A 416 SHEET 1 AA4 2 TYR A 439 THR A 440 0 SHEET 2 AA4 2 THR A 461 PHE A 462 -1 O PHE A 462 N TYR A 439 SHEET 1 AA5 5 ILE B 288 LYS B 293 0 SHEET 2 AA5 5 GLU B 301 TRP B 307 -1 O VAL B 304 N HIS B 292 SHEET 3 AA5 5 LEU B 312 THR B 318 -1 O VAL B 314 N GLY B 305 SHEET 4 AA5 5 TYR B 358 GLU B 362 -1 O ILE B 359 N LYS B 317 SHEET 5 AA5 5 LEU B 347 CYS B 351 -1 N LEU B 348 O VAL B 360 SHEET 1 AA6 3 GLY B 367 ASN B 368 0 SHEET 2 AA6 3 CYS B 415 VAL B 417 -1 O VAL B 417 N GLY B 367 SHEET 3 AA6 3 VAL B 423 VAL B 425 -1 O LYS B 424 N LEU B 416 SHEET 1 AA7 2 PHE B 405 ILE B 406 0 SHEET 2 AA7 2 ARG B 432 LEU B 433 -1 O ARG B 432 N ILE B 406 SHEET 1 AA8 2 TYR B 439 THR B 440 0 SHEET 2 AA8 2 THR B 461 PHE B 462 -1 O PHE B 462 N TYR B 439 LINK OE1 GLU A 398 ZN ZN A 602 1555 1555 2.57 LINK OE2 GLU A 398 ZN ZN A 602 1555 1555 1.97 LINK ND1 HIS A 536 ZN ZN A 602 1555 1555 2.10 LINK ZN ZN A 602 OE2 GLU B 398 1555 1555 1.83 LINK ZN ZN A 602 ND1 HIS B 536 1555 1555 2.16 CISPEP 1 PRO A 355 PRO A 356 0 -8.18 CISPEP 2 PRO B 355 PRO B 356 0 -0.53 SITE 1 AC1 13 LEU A 294 ALA A 315 LYS A 317 GLU A 332 SITE 2 AC1 13 ILE A 359 THR A 361 GLU A 362 TYR A 363 SITE 3 AC1 13 MET A 364 PRO A 365 GLY A 367 LEU A 416 SITE 4 AC1 13 ALA A 426 SITE 1 AC2 4 GLU A 398 HIS A 536 GLU B 398 HIS B 536 SITE 1 AC3 12 ALA B 315 GLU B 332 MET B 336 VAL B 345 SITE 2 AC3 12 ILE B 359 THR B 361 GLU B 362 TYR B 363 SITE 3 AC3 12 MET B 364 PRO B 365 GLY B 367 ALA B 426 CRYST1 109.688 109.688 121.520 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009117 0.005264 0.000000 0.00000 SCALE2 0.000000 0.010527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008229 0.00000