HEADER UNKNOWN FUNCTION 15-JAN-15 4XNG TITLE CENTRAL DOMAIN OF MYCOPLASMA GENITALIUM TERMINAL ORGANELLE PROTEIN TITLE 2 MG491 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MG218.1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 63-204; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA GENITALIUM; SOURCE 3 ORGANISM_TAXID: 2097; SOURCE 4 GENE: MG218.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPINE KEYWDS ANTIPARALLEL THREE-HELIX BUNDLES, ASYMMETRIC DIMER OF DIMERS, GLIDING KEYWDS 2 MOTILITY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR L.MARTINELLI,I.FITA REVDAT 2 27-APR-16 4XNG 1 JRNL REVDAT 1 30-MAR-16 4XNG 0 JRNL AUTH L.MARTINELLI,L.GARCIA-MORALES,E.QUEROL,J.PINOL,I.FITA, JRNL AUTH 2 B.M.CALISTO JRNL TITL STRUCTURE-GUIDED MUTATIONS IN THE TERMINAL ORGANELLE PROTEIN JRNL TITL 2 MG491 CAUSE MAJOR MOTILITY AND MORPHOLOGIC ALTERATIONS ON JRNL TITL 3 MYCOPLASMA GENITALIUM. JRNL REF PLOS PATHOG. V. 12 05533 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27082435 JRNL DOI 10.1371/JOURNAL.PPAT.1005533 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 13851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 578 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.467 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.398 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 50.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4653 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4613 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6240 ; 1.405 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10634 ; 1.195 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 5.927 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;39.086 ;25.212 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 933 ;18.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.255 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5189 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1065 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2232 ; 2.318 ; 3.869 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2231 ; 2.319 ; 3.869 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2783 ; 3.759 ; 5.808 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 67 203 B 67 202 8405 0.090 0.050 REMARK 3 2 A 66 202 C 66 202 8585 0.080 0.050 REMARK 3 3 A 65 203 D 65 203 8595 0.090 0.050 REMARK 3 4 B 67 202 C 67 202 8424 0.100 0.050 REMARK 3 5 B 67 202 D 67 203 8669 0.070 0.050 REMARK 3 6 C 66 202 D 66 202 8502 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 62 D 70 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1150 48.4110 -8.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.8018 T22: 0.5094 REMARK 3 T33: 1.0620 T12: 0.0524 REMARK 3 T13: -0.2984 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 20.6686 L22: 43.2907 REMARK 3 L33: 14.5432 L12: 10.0650 REMARK 3 L13: -12.5264 L23: 10.2177 REMARK 3 S TENSOR REMARK 3 S11: -0.7432 S12: 0.5594 S13: 1.4810 REMARK 3 S21: 0.8367 S22: 1.8937 S23: 0.3246 REMARK 3 S31: 1.0036 S32: 0.4048 S33: -1.1505 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 71 D 205 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3390 25.3960 -0.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.0924 REMARK 3 T33: 0.0326 T12: -0.0046 REMARK 3 T13: 0.0296 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 8.2574 L22: 8.5380 REMARK 3 L33: 2.7918 L12: 4.8715 REMARK 3 L13: 1.3730 L23: 0.4887 REMARK 3 S TENSOR REMARK 3 S11: -0.1962 S12: 0.6001 S13: 0.1044 REMARK 3 S21: -0.4214 S22: 0.4101 S23: -0.0714 REMARK 3 S31: 0.1421 S32: -0.2386 S33: -0.2138 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 65 C 70 REMARK 3 ORIGIN FOR THE GROUP (A): -52.8280 41.4540 10.4860 REMARK 3 T TENSOR REMARK 3 T11: 1.2696 T22: 0.2536 REMARK 3 T33: 1.7839 T12: 0.1643 REMARK 3 T13: -0.1001 T23: 0.2026 REMARK 3 L TENSOR REMARK 3 L11: 116.7692 L22: 22.9048 REMARK 3 L33: 56.2823 L12: -31.0772 REMARK 3 L13: 6.8937 L23: -2.2520 REMARK 3 S TENSOR REMARK 3 S11: -2.2199 S12: -1.6497 S13: 8.3065 REMARK 3 S21: -0.3278 S22: 1.0174 S23: 1.4159 REMARK 3 S31: 1.9388 S32: -1.9205 S33: 1.2026 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 71 C 205 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5820 17.3020 11.9020 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.2181 REMARK 3 T33: 0.1994 T12: -0.0484 REMARK 3 T13: 0.0053 T23: 0.1165 REMARK 3 L TENSOR REMARK 3 L11: 3.5723 L22: 8.3588 REMARK 3 L33: 7.0893 L12: -0.4824 REMARK 3 L13: 0.2415 L23: -3.6422 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.2875 S13: -0.2363 REMARK 3 S21: 0.2541 S22: 0.1216 S23: -0.0911 REMARK 3 S31: -0.3079 S32: -0.2665 S33: -0.0750 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -46.0720 50.5380 37.2330 REMARK 3 T TENSOR REMARK 3 T11: 1.2348 T22: 1.2722 REMARK 3 T33: 1.1539 T12: 0.2800 REMARK 3 T13: 0.3178 T23: -0.2205 REMARK 3 L TENSOR REMARK 3 L11: 44.2986 L22: 83.2715 REMARK 3 L33: 6.1416 L12: 44.5606 REMARK 3 L13: -15.4463 L23: -10.1516 REMARK 3 S TENSOR REMARK 3 S11: -1.1531 S12: 1.3905 S13: -2.3919 REMARK 3 S21: 1.1997 S22: -0.4551 S23: 3.0964 REMARK 3 S31: 0.7626 S32: -0.7174 S33: 1.6082 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): -39.6160 25.2540 30.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.4753 T22: 0.8091 REMARK 3 T33: 0.1394 T12: 0.0075 REMARK 3 T13: 0.0354 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 9.7276 L22: 8.5557 REMARK 3 L33: 2.3612 L12: -6.0085 REMARK 3 L13: 0.0076 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.1112 S12: -1.3474 S13: 0.5674 REMARK 3 S21: 0.5905 S22: 0.4748 S23: -0.3107 REMARK 3 S31: -0.0230 S32: 0.2610 S33: -0.3636 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0890 41.0160 19.8100 REMARK 3 T TENSOR REMARK 3 T11: 1.5794 T22: 0.6976 REMARK 3 T33: 1.5900 T12: -0.4815 REMARK 3 T13: 0.2838 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 82.3363 L22: 16.9320 REMARK 3 L33: 20.2204 L12: -22.4826 REMARK 3 L13: 34.6142 L23: -17.2572 REMARK 3 S TENSOR REMARK 3 S11: -2.7839 S12: 4.9078 S13: 4.2592 REMARK 3 S21: 1.2372 S22: -1.0586 S23: -3.8525 REMARK 3 S31: -1.4073 S32: 1.8659 S33: 3.8424 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1690 17.5340 18.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.0917 REMARK 3 T33: 0.2146 T12: 0.0213 REMARK 3 T13: -0.0668 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 4.5576 L22: 9.3063 REMARK 3 L33: 6.9914 L12: 2.4384 REMARK 3 L13: 0.2392 L23: 3.9256 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.4983 S13: -0.4194 REMARK 3 S21: 0.2969 S22: 0.2333 S23: -0.1431 REMARK 3 S31: -0.1013 S32: 0.1066 S33: -0.3211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4XNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979154 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13879 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, LI2SO4, TRIS, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.13500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 62 REMARK 465 SER A 63 REMARK 465 SER A 64 REMARK 465 ALA A 205 REMARK 465 ALA B 62 REMARK 465 SER B 63 REMARK 465 SER B 64 REMARK 465 PHE B 65 REMARK 465 HIS B 66 REMARK 465 LYS B 204 REMARK 465 ALA B 205 REMARK 465 ALA C 62 REMARK 465 SER C 63 REMARK 465 SER C 64 REMARK 465 PHE C 65 REMARK 465 LYS C 204 REMARK 465 ALA C 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE D 65 N ASN D 67 2.11 REMARK 500 O PHE A 65 N ASN A 67 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 71 OE1 GLU B 71 2465 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA D 205 C ALA D 205 O 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 66 0.93 -22.99 REMARK 500 CYS A 87 -56.86 -124.74 REMARK 500 ASP A 108 -122.51 68.25 REMARK 500 SER A 109 -115.09 -158.16 REMARK 500 TYR A 110 -60.95 -140.70 REMARK 500 VAL A 144 -62.90 -96.85 REMARK 500 ALA A 203 -88.85 -122.41 REMARK 500 CYS B 87 -56.98 -125.21 REMARK 500 PHE B 107 -84.54 -25.95 REMARK 500 ASP B 108 -136.00 21.08 REMARK 500 SER B 109 -96.29 -165.48 REMARK 500 TYR B 110 -55.86 -159.85 REMARK 500 VAL B 144 -62.89 -96.62 REMARK 500 CYS C 87 -56.87 -125.79 REMARK 500 SER C 106 -81.70 -26.92 REMARK 500 PHE C 107 -32.05 -138.88 REMARK 500 ASP C 108 -81.03 78.31 REMARK 500 SER C 109 -100.69 -151.92 REMARK 500 TYR C 110 -55.69 -162.06 REMARK 500 VAL C 144 -60.26 -97.78 REMARK 500 SER D 63 -144.26 -136.74 REMARK 500 HIS D 66 -11.35 -31.91 REMARK 500 CYS D 87 -56.64 -124.95 REMARK 500 ASP D 108 -115.16 145.05 REMARK 500 SER D 109 -115.96 -161.35 REMARK 500 TYR D 110 -60.13 -141.45 REMARK 500 VAL D 144 -62.49 -97.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XNG A 63 204 UNP Q9ZB78 Y218A_MYCGE 63 204 DBREF 4XNG B 63 204 UNP Q9ZB78 Y218A_MYCGE 63 204 DBREF 4XNG C 63 204 UNP Q9ZB78 Y218A_MYCGE 63 204 DBREF 4XNG D 63 204 UNP Q9ZB78 Y218A_MYCGE 63 204 SEQADV 4XNG ALA A 62 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG MSE A 168 UNP Q9ZB78 ILE 168 ENGINEERED MUTATION SEQADV 4XNG ALA A 205 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG ALA B 62 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG MSE B 168 UNP Q9ZB78 ILE 168 ENGINEERED MUTATION SEQADV 4XNG ALA B 205 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG ALA C 62 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG MSE C 168 UNP Q9ZB78 ILE 168 ENGINEERED MUTATION SEQADV 4XNG ALA C 205 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG ALA D 62 UNP Q9ZB78 EXPRESSION TAG SEQADV 4XNG MSE D 168 UNP Q9ZB78 ILE 168 ENGINEERED MUTATION SEQADV 4XNG ALA D 205 UNP Q9ZB78 EXPRESSION TAG SEQRES 1 A 144 ALA SER SER PHE HIS ASN PHE SER LYS GLU THR LEU GLN SEQRES 2 A 144 LYS GLN ALA LYS ARG GLY PHE LEU LEU LEU GLU ARG CYS SEQRES 3 A 144 SER LEU VAL GLY LEU GLN GLN LEU GLU LEU GLU TYR VAL SEQRES 4 A 144 ASN LEU LEU GLY ARG SER PHE ASP SER TYR GLN GLN LYS SEQRES 5 A 144 THR GLU LEU LEU ASN ASN LEU LYS GLU LEU VAL ASP GLU SEQRES 6 A 144 HIS PHE SER ASP THR GLU LYS ILE ILE ASN THR LEU GLU SEQRES 7 A 144 LYS ILE PHE ASP VAL ILE GLY GLY SER GLU TYR THR PRO SEQRES 8 A 144 VAL LEU ASN SER PHE PHE ASN LYS LEU LEU SER ASP PRO SEQRES 9 A 144 ASP PRO MSE GLN ARG GLU ILE GLY LEU ARG GLN PHE ILE SEQRES 10 A 144 ILE THR LEU ARG GLN ARG PHE LYS LYS LEU SER GLN LYS SEQRES 11 A 144 ILE ASP SER SER LEU LYS GLN ILE GLU THR GLU ALA LYS SEQRES 12 A 144 ALA SEQRES 1 B 144 ALA SER SER PHE HIS ASN PHE SER LYS GLU THR LEU GLN SEQRES 2 B 144 LYS GLN ALA LYS ARG GLY PHE LEU LEU LEU GLU ARG CYS SEQRES 3 B 144 SER LEU VAL GLY LEU GLN GLN LEU GLU LEU GLU TYR VAL SEQRES 4 B 144 ASN LEU LEU GLY ARG SER PHE ASP SER TYR GLN GLN LYS SEQRES 5 B 144 THR GLU LEU LEU ASN ASN LEU LYS GLU LEU VAL ASP GLU SEQRES 6 B 144 HIS PHE SER ASP THR GLU LYS ILE ILE ASN THR LEU GLU SEQRES 7 B 144 LYS ILE PHE ASP VAL ILE GLY GLY SER GLU TYR THR PRO SEQRES 8 B 144 VAL LEU ASN SER PHE PHE ASN LYS LEU LEU SER ASP PRO SEQRES 9 B 144 ASP PRO MSE GLN ARG GLU ILE GLY LEU ARG GLN PHE ILE SEQRES 10 B 144 ILE THR LEU ARG GLN ARG PHE LYS LYS LEU SER GLN LYS SEQRES 11 B 144 ILE ASP SER SER LEU LYS GLN ILE GLU THR GLU ALA LYS SEQRES 12 B 144 ALA SEQRES 1 C 144 ALA SER SER PHE HIS ASN PHE SER LYS GLU THR LEU GLN SEQRES 2 C 144 LYS GLN ALA LYS ARG GLY PHE LEU LEU LEU GLU ARG CYS SEQRES 3 C 144 SER LEU VAL GLY LEU GLN GLN LEU GLU LEU GLU TYR VAL SEQRES 4 C 144 ASN LEU LEU GLY ARG SER PHE ASP SER TYR GLN GLN LYS SEQRES 5 C 144 THR GLU LEU LEU ASN ASN LEU LYS GLU LEU VAL ASP GLU SEQRES 6 C 144 HIS PHE SER ASP THR GLU LYS ILE ILE ASN THR LEU GLU SEQRES 7 C 144 LYS ILE PHE ASP VAL ILE GLY GLY SER GLU TYR THR PRO SEQRES 8 C 144 VAL LEU ASN SER PHE PHE ASN LYS LEU LEU SER ASP PRO SEQRES 9 C 144 ASP PRO MSE GLN ARG GLU ILE GLY LEU ARG GLN PHE ILE SEQRES 10 C 144 ILE THR LEU ARG GLN ARG PHE LYS LYS LEU SER GLN LYS SEQRES 11 C 144 ILE ASP SER SER LEU LYS GLN ILE GLU THR GLU ALA LYS SEQRES 12 C 144 ALA SEQRES 1 D 144 ALA SER SER PHE HIS ASN PHE SER LYS GLU THR LEU GLN SEQRES 2 D 144 LYS GLN ALA LYS ARG GLY PHE LEU LEU LEU GLU ARG CYS SEQRES 3 D 144 SER LEU VAL GLY LEU GLN GLN LEU GLU LEU GLU TYR VAL SEQRES 4 D 144 ASN LEU LEU GLY ARG SER PHE ASP SER TYR GLN GLN LYS SEQRES 5 D 144 THR GLU LEU LEU ASN ASN LEU LYS GLU LEU VAL ASP GLU SEQRES 6 D 144 HIS PHE SER ASP THR GLU LYS ILE ILE ASN THR LEU GLU SEQRES 7 D 144 LYS ILE PHE ASP VAL ILE GLY GLY SER GLU TYR THR PRO SEQRES 8 D 144 VAL LEU ASN SER PHE PHE ASN LYS LEU LEU SER ASP PRO SEQRES 9 D 144 ASP PRO MSE GLN ARG GLU ILE GLY LEU ARG GLN PHE ILE SEQRES 10 D 144 ILE THR LEU ARG GLN ARG PHE LYS LYS LEU SER GLN LYS SEQRES 11 D 144 ILE ASP SER SER LEU LYS GLN ILE GLU THR GLU ALA LYS SEQRES 12 D 144 ALA HET MSE A 168 8 HET MSE B 168 8 HET MSE C 168 8 HET MSE D 168 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 AA1 SER A 69 CYS A 87 1 19 HELIX 2 AA2 CYS A 87 ARG A 105 1 19 HELIX 3 AA3 TYR A 110 GLY A 146 1 37 HELIX 4 AA4 ASN A 159 ASP A 164 5 6 HELIX 5 AA5 ASP A 166 ALA A 203 1 38 HELIX 6 AA6 SER B 69 CYS B 87 1 19 HELIX 7 AA7 CYS B 87 ARG B 105 1 19 HELIX 8 AA8 TYR B 110 GLY B 146 1 37 HELIX 9 AA9 ASN B 159 ASP B 164 5 6 HELIX 10 AB1 ASP B 166 GLU B 202 1 37 HELIX 11 AB2 SER C 69 CYS C 87 1 19 HELIX 12 AB3 CYS C 87 ARG C 105 1 19 HELIX 13 AB4 TYR C 110 GLY C 146 1 37 HELIX 14 AB5 ASN C 159 ASP C 164 5 6 HELIX 15 AB6 ASP C 166 ALA C 203 1 38 HELIX 16 AB7 SER D 69 CYS D 87 1 19 HELIX 17 AB8 CYS D 87 ARG D 105 1 19 HELIX 18 AB9 TYR D 110 GLY D 146 1 37 HELIX 19 AC1 ASN D 159 ASP D 164 5 6 HELIX 20 AC2 ASP D 166 GLU D 202 1 37 LINK C PRO A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N GLN A 169 1555 1555 1.33 LINK C PRO B 167 N MSE B 168 1555 1555 1.33 LINK C MSE B 168 N GLN B 169 1555 1555 1.32 LINK C PRO C 167 N MSE C 168 1555 1555 1.33 LINK C MSE C 168 N GLN C 169 1555 1555 1.32 LINK C PRO D 167 N MSE D 168 1555 1555 1.33 LINK C MSE D 168 N GLN D 169 1555 1555 1.32 CISPEP 1 SER A 106 PHE A 107 0 -27.31 CRYST1 98.270 108.420 62.190 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010176 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016080 0.00000