HEADER TRANSPORT PROTEIN 15-JAN-15 4XNK
TITLE X-RAY STRUCTURE OF ALGE1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALGINATE PRODUCTION PROTEIN ALGE;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1;
SOURCE 3 ORGANISM_TAXID: 208964;
SOURCE 4 GENE: ALGE, ALG76, PA3544;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ALGE ALGINATE EXPORT PROTEIN, TRANSPORT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.MA,C.Y.HUANG,V.OLIERIC,K.DIEDERICHS,M.WANG,M.CAFFREY
REVDAT 3 10-JAN-24 4XNK 1 HETSYN
REVDAT 2 17-JUN-15 4XNK 1 JRNL
REVDAT 1 03-JUN-15 4XNK 0
JRNL AUTH C.Y.HUANG,V.OLIERIC,P.MA,E.PANEPUCCI,K.DIEDERICHS,M.WANG,
JRNL AUTH 2 M.CAFFREY
JRNL TITL IN MESO IN SITU SERIAL X-RAY CRYSTALLOGRAPHY OF SOLUBLE AND
JRNL TITL 2 MEMBRANE PROTEINS.
JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1238 2015
JRNL REFN ESSN 1399-0047
JRNL PMID 26057665
JRNL DOI 10.1107/S1399004715005210
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.42
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5
REMARK 3 NUMBER OF REFLECTIONS : 16066
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.229
REMARK 3 R VALUE (WORKING SET) : 0.226
REMARK 3 FREE R VALUE : 0.274
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.240
REMARK 3 FREE R VALUE TEST SET COUNT : 1003
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 8
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2902
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2460
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2709
REMARK 3 BIN R VALUE (WORKING SET) : 0.2406
REMARK 3 BIN FREE R VALUE : 0.3207
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.65
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 193
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3347
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 97
REMARK 3 SOLVENT ATOMS : 26
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 72.28
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.59
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 14.13880
REMARK 3 B22 (A**2) : -28.95180
REMARK 3 B33 (A**2) : 14.81310
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.371
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.836
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.358
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.812
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.363
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.827
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.759
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3547 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4776 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1239 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 99 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 514 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3519 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 424 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3242 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 1.07
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.64
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.26
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4XNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-15.
REMARK 100 THE DEPOSITION ID IS D_1000204627.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-MAY-14
REMARK 200 TEMPERATURE (KELVIN) : 293
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.033
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16066
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3
REMARK 200 DATA REDUNDANCY : 5.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.40
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4AFK
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 59.34
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 450 MM NH4CL, 21 %(V/V) PEG 400, 100
REMARK 280 MM MES BUFFER PH 6.5, LIPIDIC CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.00500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.34500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.17000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.34500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.00500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.17000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ASN A 2
REMARK 465 SER A 3
REMARK 465 SER A 4
REMARK 465 ARG A 5
REMARK 465 SER A 6
REMARK 465 VAL A 7
REMARK 465 ASN A 8
REMARK 465 PRO A 9
REMARK 465 ARG A 10
REMARK 465 PRO A 11
REMARK 465 SER A 12
REMARK 465 PHE A 13
REMARK 465 ALA A 14
REMARK 465 PRO A 15
REMARK 465 ARG A 16
REMARK 465 ALA A 17
REMARK 465 LEU A 18
REMARK 465 SER A 19
REMARK 465 LEU A 20
REMARK 465 ALA A 21
REMARK 465 ILE A 22
REMARK 465 ALA A 23
REMARK 465 LEU A 24
REMARK 465 LEU A 25
REMARK 465 LEU A 26
REMARK 465 GLY A 27
REMARK 465 ALA A 28
REMARK 465 PRO A 29
REMARK 465 ALA A 30
REMARK 465 PHE A 31
REMARK 465 ALA A 32
REMARK 465 ALA A 33
REMARK 465 ASN A 34
REMARK 465 SER A 35
REMARK 465 GLY A 36
REMARK 465 GLU A 37
REMARK 465 ALA A 38
REMARK 465 ASP A 107
REMARK 465 THR A 108
REMARK 465 ASP A 109
REMARK 465 ASP A 110
REMARK 465 GLY A 111
REMARK 465 ASN A 112
REMARK 465 ASN A 113
REMARK 465 SER A 114
REMARK 465 ARG A 115
REMARK 465 ASN A 116
REMARK 465 ASP A 117
REMARK 465 GLY A 118
REMARK 465 ARG A 119
REMARK 465 GLU A 120
REMARK 465 PRO A 121
REMARK 465 LYS A 439
REMARK 465 GLN A 440
REMARK 465 GLY A 441
REMARK 465 LEU A 442
REMARK 465 LEU A 443
REMARK 465 PRO A 444
REMARK 465 ALA A 445
REMARK 465 SER A 446
REMARK 465 MET A 447
REMARK 465 SER A 448
REMARK 465 GLN A 449
REMARK 465 TYR A 450
REMARK 465 VAL A 451
REMARK 465 ASP A 452
REMARK 465 GLU A 453
REMARK 465 PRO A 454
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 131 103.87 -161.41
REMARK 500 ASP A 162 73.85 -157.98
REMARK 500 VAL A 293 -127.80 56.64
REMARK 500 ASP A 294 54.62 -91.09
REMARK 500 ASP A 295 12.84 59.50
REMARK 500 ASP A 321 -157.85 -153.79
REMARK 500 ASN A 355 42.44 -92.97
REMARK 500 ARG A 389 -86.65 61.77
REMARK 500 GLU A 390 27.10 -150.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PE5 A 503
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 507 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 55 OD1
REMARK 620 2 ASP A 55 OD2 53.5
REMARK 620 3 ASP A 57 OD1 69.2 113.7
REMARK 620 4 ASP A 57 OD2 70.9 80.9 48.6
REMARK 620 5 ALA A 61 O 142.0 144.8 73.3 79.9
REMARK 620 6 GLY A 63 O 73.2 113.3 72.9 118.8 101.8
REMARK 620 7 SER A 304 OG 91.0 124.1 24.5 44.5 51.0 89.4
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A 509 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ALA A 136 O
REMARK 620 2 THR A 139 O 93.5
REMARK 620 3 TYR A 141 O 163.8 85.4
REMARK 620 4 GLU A 144 O 104.2 133.6 88.0
REMARK 620 5 GLU A 322 OE1 134.4 126.4 41.6 65.9
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 508
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 509
DBREF 4XNK A 1 490 UNP P18895 ALGE_PSEAE 1 490
SEQRES 1 A 490 MET ASN SER SER ARG SER VAL ASN PRO ARG PRO SER PHE
SEQRES 2 A 490 ALA PRO ARG ALA LEU SER LEU ALA ILE ALA LEU LEU LEU
SEQRES 3 A 490 GLY ALA PRO ALA PHE ALA ALA ASN SER GLY GLU ALA PRO
SEQRES 4 A 490 LYS ASN PHE GLY LEU ASP VAL LYS ILE THR GLY GLU SER
SEQRES 5 A 490 GLU ASN ASP ARG ASP LEU GLY THR ALA PRO GLY GLY THR
SEQRES 6 A 490 LEU ASN ASP ILE GLY ILE ASP LEU ARG PRO TRP ALA PHE
SEQRES 7 A 490 GLY GLN TRP GLY ASP TRP SER ALA TYR PHE MET GLY GLN
SEQRES 8 A 490 ALA VAL ALA ALA THR ASP THR ILE GLU THR ASP THR LEU
SEQRES 9 A 490 GLN SER ASP THR ASP ASP GLY ASN ASN SER ARG ASN ASP
SEQRES 10 A 490 GLY ARG GLU PRO ASP LYS SER TYR LEU ALA ALA ARG GLU
SEQRES 11 A 490 PHE TRP VAL ASP TYR ALA GLY LEU THR ALA TYR PRO GLY
SEQRES 12 A 490 GLU HIS LEU ARG PHE GLY ARG GLN ARG LEU ARG GLU ASP
SEQRES 13 A 490 SER GLY GLN TRP GLN ASP THR ASN ILE GLU ALA LEU ASN
SEQRES 14 A 490 TRP SER PHE GLU THR THR LEU LEU ASN ALA HIS ALA GLY
SEQRES 15 A 490 VAL ALA GLN ARG PHE SER GLU TYR ARG THR ASP LEU ASP
SEQRES 16 A 490 GLU LEU ALA PRO GLU ASP LYS ASP ARG THR HIS VAL PHE
SEQRES 17 A 490 GLY ASP ILE SER THR GLN TRP ALA PRO HIS HIS ARG ILE
SEQRES 18 A 490 GLY VAL ARG ILE HIS HIS ALA ASP ASP SER GLY HIS LEU
SEQRES 19 A 490 ARG ARG PRO GLY GLU GLU VAL ASP ASN LEU ASP LYS THR
SEQRES 20 A 490 TYR THR GLY GLN LEU THR TRP LEU GLY ILE GLU ALA THR
SEQRES 21 A 490 GLY ASP ALA TYR ASN TYR ARG SER SER MET PRO LEU ASN
SEQRES 22 A 490 TYR TRP ALA SER ALA THR TRP LEU THR GLY ASP ARG ASP
SEQRES 23 A 490 ASN LEU THR THR THR THR VAL ASP ASP ARG ARG ILE ALA
SEQRES 24 A 490 THR GLY LYS GLN SER GLY ASP VAL ASN ALA PHE GLY VAL
SEQRES 25 A 490 ASP LEU GLY LEU ARG TRP ASN ILE ASP GLU GLN TRP LYS
SEQRES 26 A 490 ALA GLY VAL GLY TYR ALA ARG GLY SER GLY GLY GLY LYS
SEQRES 27 A 490 ASP GLY GLU GLU GLN PHE GLN GLN THR GLY LEU GLU SER
SEQRES 28 A 490 ASN ARG SER ASN PHE THR GLY THR ARG SER ARG VAL HIS
SEQRES 29 A 490 ARG PHE GLY GLU ALA PHE ARG GLY GLU LEU SER ASN LEU
SEQRES 30 A 490 GLN ALA ALA THR LEU PHE GLY SER TRP GLN LEU ARG GLU
SEQRES 31 A 490 ASP TYR ASP ALA SER LEU VAL TYR HIS LYS PHE TRP ARG
SEQRES 32 A 490 VAL ASP ASP ASP SER ASP ILE GLY THR SER GLY ILE ASN
SEQRES 33 A 490 ALA ALA LEU GLN PRO GLY GLU LYS ASP ILE GLY GLN GLU
SEQRES 34 A 490 LEU ASP LEU VAL VAL THR LYS TYR PHE LYS GLN GLY LEU
SEQRES 35 A 490 LEU PRO ALA SER MET SER GLN TYR VAL ASP GLU PRO SER
SEQRES 36 A 490 ALA LEU ILE ARG PHE ARG GLY GLY LEU PHE LYS PRO GLY
SEQRES 37 A 490 ASP ALA TYR GLY PRO GLY THR ASP SER THR MET HIS ARG
SEQRES 38 A 490 ALA PHE VAL ASP PHE ILE TRP ARG PHE
HET LDA A 501 16
HET LDA A 502 16
HET PE5 A 503 8
HET 78M A 504 22
HET LDA A 505 16
HET LDA A 506 16
HET CA A 507 1
HET NA A 508 1
HET NA A 509 1
HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETNAM 78M (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
HETNAM CA CALCIUM ION
HETNAM NA SODIUM ION
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
HETSYN 78M 7.8 MONOACYLGLYCEROL
FORMUL 2 LDA 4(C14 H31 N O)
FORMUL 4 PE5 C18 H38 O9
FORMUL 5 78M C18 H34 O4
FORMUL 8 CA CA 2+
FORMUL 9 NA 2(NA 1+)
FORMUL 11 HOH *26(H2 O)
HELIX 1 AA1 ALA A 198 LYS A 202 5 5
HELIX 2 AA2 GLY A 337 GLU A 341 5 5
SHEET 1 AA119 PHE A 42 GLU A 53 0
SHEET 2 AA119 LEU A 66 TRP A 81 -1 O LEU A 66 N GLU A 53
SHEET 3 AA119 TRP A 84 ALA A 95 -1 O ALA A 92 N LEU A 73
SHEET 4 AA119 SER A 124 TYR A 135 -1 O ALA A 127 N GLN A 91
SHEET 5 AA119 GLU A 144 ARG A 154 -1 O LEU A 146 N TYR A 135
SHEET 6 AA119 ASP A 162 GLU A 173 -1 O ASN A 169 N ARG A 147
SHEET 7 AA119 LEU A 177 GLN A 185 -1 O ALA A 181 N TRP A 170
SHEET 8 AA119 ARG A 204 ALA A 216 -1 O SER A 212 N ASN A 178
SHEET 9 AA119 HIS A 219 ASP A 230 -1 O ASP A 229 N THR A 205
SHEET 10 AA119 TYR A 248 GLY A 261 -1 O TRP A 254 N HIS A 226
SHEET 11 AA119 LEU A 272 THR A 291 -1 O TRP A 280 N LEU A 255
SHEET 12 AA119 ILE A 298 ASN A 319 -1 O GLY A 311 N THR A 279
SHEET 13 AA119 LYS A 325 GLY A 333 -1 O TYR A 330 N LEU A 314
SHEET 14 AA119 LEU A 377 GLN A 387 -1 O SER A 385 N LYS A 325
SHEET 15 AA119 TYR A 392 ARG A 403 -1 O TYR A 398 N LEU A 382
SHEET 16 AA119 ASP A 425 TYR A 437 -1 O THR A 435 N ASP A 393
SHEET 17 AA119 LEU A 457 PRO A 467 -1 O GLY A 462 N LEU A 432
SHEET 18 AA119 MET A 479 ARG A 489 -1 O ASP A 485 N ARG A 459
SHEET 19 AA119 PHE A 42 GLU A 53 -1 N VAL A 46 O TRP A 488
SHEET 1 AA2 2 ARG A 353 SER A 354 0
SHEET 2 AA2 2 VAL A 363 HIS A 364 -1 O VAL A 363 N SER A 354
SHEET 1 AA3 2 GLY A 372 GLU A 373 0
SHEET 2 AA3 2 GLY A 411 THR A 412 -1 O GLY A 411 N GLU A 373
LINK OD1 ASP A 55 CA CA A 507 1555 1555 2.39
LINK OD2 ASP A 55 CA CA A 507 1555 1555 2.48
LINK OD1 ASP A 57 CA CA A 507 1555 1555 2.71
LINK OD2 ASP A 57 CA CA A 507 1555 1555 2.62
LINK O ALA A 61 CA CA A 507 1555 1555 2.18
LINK O GLY A 63 CA CA A 507 1555 1555 2.42
LINK O ALA A 136 NA NA A 509 1555 1555 2.56
LINK O THR A 139 NA NA A 509 1555 1555 3.12
LINK O TYR A 141 NA NA A 509 1555 1555 2.77
LINK O GLU A 144 NA NA A 509 1555 1555 2.92
LINK O ASN A 265 NA NA A 508 1555 1555 2.70
LINK OG SER A 304 CA CA A 507 1555 3547 2.97
LINK OE1 GLU A 322 NA NA A 509 1555 4457 2.92
SITE 1 AC1 1 TRP A 318
SITE 1 AC2 8 LEU A 126 ALA A 127 SER A 188 TYR A 190
SITE 2 AC2 8 ARG A 191 ASP A 195 TYR A 330 GLN A 378
SITE 1 AC3 7 GLN A 159 TRP A 254 SER A 277 THR A 279
SITE 2 AC3 7 GLY A 311 GLN A 346 THR A 347
SITE 1 AC4 8 TRP A 81 PHE A 88 PHE A 148 HIS A 219
SITE 2 AC4 8 MET A 270 PRO A 271 LEU A 272 TYR A 274
SITE 1 AC5 7 SER A 52 ASN A 54 ASN A 67 PRO A 237
SITE 2 AC5 7 THR A 300 GLY A 301 PHE A 460
SITE 1 AC6 3 GLY A 50 SER A 52 ASN A 67
SITE 1 AC7 5 ASP A 55 ASP A 57 ALA A 61 GLY A 63
SITE 2 AC7 5 SER A 304
SITE 1 AC8 5 ASN A 265 ASN A 273 ARG A 317 ASN A 319
SITE 2 AC8 5 LYS A 325
SITE 1 AC9 5 ALA A 136 THR A 139 TYR A 141 GLU A 144
SITE 2 AC9 5 GLU A 322
CRYST1 48.010 74.340 184.690 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020829 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013452 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005414 0.00000