data_4XNO # _entry.id 4XNO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4XNO pdb_00004xno 10.2210/pdb4xno/pdb WWPDB D_1000205918 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-27 2 'Structure model' 1 1 2016-05-18 3 'Structure model' 1 2 2017-01-11 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Author supporting evidence' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 4 'Structure model' software 3 5 'Structure model' pdbx_audit_support 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_software.classification' 3 5 'Structure model' '_pdbx_audit_support.funding_organization' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4XNO _pdbx_database_status.recvd_initial_deposition_date 2015-01-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4XO0 PDB . unspecified 4XPC PDB . unspecified 4XPE PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Georgiadis, M.M.' 1 'Singh, I.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 137 _citation.language ? _citation.page_first 6947 _citation.page_last 6955 _citation.title 'Structural basis for a six nucleotide genetic alphabet.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.5b03482 _citation.pdbx_database_id_PubMed 25961938 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Georgiadis, M.M.' 1 ? primary 'Singh, I.' 2 ? primary 'Kellett, W.F.' 3 ? primary 'Hoshika, S.' 4 ? primary 'Benner, S.A.' 5 ? primary 'Richards, N.G.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*(BRU)P*AP*TP*(1WA)P*(1WA)P*(1WA)P*(1W5)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3') ; 5101.140 2 ? ? ? ? 2 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(BRU)(DA)(DT)(1WA)(1WA)(1WA)(1W5)(1W5)(1W5)(DA)(DT)(DA)(DA)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTUATXXXXXXATAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 BRU n 1 4 DA n 1 5 DT n 1 6 1WA n 1 7 1WA n 1 8 1WA n 1 9 1W5 n 1 10 1W5 n 1 11 1W5 n 1 12 DA n 1 13 DT n 1 14 DA n 1 15 DA n 1 16 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1W5 'DNA linking' . '(1R)-1-(6-amino-2-hydroxy-5-nitropyridin-3-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol' ? 'C10 H14 N3 O9 P' 351.207 1WA 'DNA linking' . '2-amino-8-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-hydroxy-1H-imidazo[1,2-a][1,3,5]triazine-5,8-diium' ? 'C10 H16 N5 O7 P 2' 349.237 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 BRU 3 3 3 BRU BRU A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 1WA 6 6 6 1WA DP A . n A 1 7 1WA 7 7 7 1WA DP A . n A 1 8 1WA 8 8 8 1WA DP A . n A 1 9 1W5 9 9 9 1W5 DZ A . n A 1 10 1W5 10 10 10 1W5 DZ A . n A 1 11 1W5 11 11 11 1W5 DZ A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DA 15 15 15 DA DA A . n A 1 16 DG 16 16 16 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 BRU 3 3 3 BRU BRU B . n B 1 4 DA 4 4 4 DA DA B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 1WA 6 6 6 1WA DP B . n B 1 7 1WA 7 7 7 1WA DP B . n B 1 8 1WA 8 8 8 1WA DP B . n B 1 9 1W5 9 9 9 1W5 DZ B . n B 1 10 1W5 10 10 10 1W5 DZ B . n B 1 11 1W5 11 11 11 1W5 DZ B . n B 1 12 DA 12 12 12 DA DA B . n B 1 13 DT 13 13 13 DT DT B . n B 1 14 DA 14 14 14 DA DA B . n B 1 15 DA 15 15 15 DA DA B . n B 1 16 DG 16 16 16 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 58 HOH HOH A . C 2 HOH 2 102 30 HOH HOH A . C 2 HOH 3 103 45 HOH HOH A . C 2 HOH 4 104 40 HOH HOH A . C 2 HOH 5 105 34 HOH HOH A . C 2 HOH 6 106 36 HOH HOH A . C 2 HOH 7 107 67 HOH HOH A . C 2 HOH 8 108 57 HOH HOH A . C 2 HOH 9 109 70 HOH HOH A . C 2 HOH 10 110 89 HOH HOH A . C 2 HOH 11 111 64 HOH HOH A . C 2 HOH 12 112 68 HOH HOH A . C 2 HOH 13 113 90 HOH HOH A . C 2 HOH 14 114 5 HOH HOH A . C 2 HOH 15 115 24 HOH HOH A . C 2 HOH 16 116 32 HOH HOH A . C 2 HOH 17 117 7 HOH HOH A . C 2 HOH 18 118 78 HOH HOH A . C 2 HOH 19 119 88 HOH HOH A . C 2 HOH 20 120 43 HOH HOH A . C 2 HOH 21 121 77 HOH HOH A . C 2 HOH 22 122 79 HOH HOH A . C 2 HOH 23 123 3 HOH HOH A . C 2 HOH 24 124 81 HOH HOH A . C 2 HOH 25 125 41 HOH HOH A . C 2 HOH 26 126 75 HOH HOH A . C 2 HOH 27 127 47 HOH HOH A . C 2 HOH 28 128 87 HOH HOH A . C 2 HOH 29 129 80 HOH HOH A . C 2 HOH 30 130 76 HOH HOH A . D 2 HOH 1 101 56 HOH HOH B . D 2 HOH 2 102 52 HOH HOH B . D 2 HOH 3 103 14 HOH HOH B . D 2 HOH 4 104 29 HOH HOH B . D 2 HOH 5 105 35 HOH HOH B . D 2 HOH 6 106 18 HOH HOH B . D 2 HOH 7 107 12 HOH HOH B . D 2 HOH 8 108 85 HOH HOH B . D 2 HOH 9 109 91 HOH HOH B . D 2 HOH 10 110 31 HOH HOH B . D 2 HOH 11 111 15 HOH HOH B . D 2 HOH 12 112 51 HOH HOH B . D 2 HOH 13 113 27 HOH HOH B . D 2 HOH 14 114 25 HOH HOH B . D 2 HOH 15 115 11 HOH HOH B . D 2 HOH 16 116 42 HOH HOH B . D 2 HOH 17 117 21 HOH HOH B . D 2 HOH 18 118 4 HOH HOH B . D 2 HOH 19 119 55 HOH HOH B . D 2 HOH 20 120 10 HOH HOH B . D 2 HOH 21 121 22 HOH HOH B . D 2 HOH 22 122 23 HOH HOH B . D 2 HOH 23 123 16 HOH HOH B . D 2 HOH 24 124 44 HOH HOH B . D 2 HOH 25 125 13 HOH HOH B . D 2 HOH 26 126 1 HOH HOH B . D 2 HOH 27 127 6 HOH HOH B . D 2 HOH 28 128 62 HOH HOH B . D 2 HOH 29 129 49 HOH HOH B . D 2 HOH 30 130 37 HOH HOH B . D 2 HOH 31 131 19 HOH HOH B . D 2 HOH 32 132 2 HOH HOH B . D 2 HOH 33 133 9 HOH HOH B . D 2 HOH 34 134 20 HOH HOH B . D 2 HOH 35 135 73 HOH HOH B . D 2 HOH 36 136 60 HOH HOH B . D 2 HOH 37 137 48 HOH HOH B . D 2 HOH 38 138 33 HOH HOH B . D 2 HOH 39 139 28 HOH HOH B . D 2 HOH 40 140 39 HOH HOH B . D 2 HOH 41 141 84 HOH HOH B . D 2 HOH 42 142 53 HOH HOH B . D 2 HOH 43 143 82 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 4XNO _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.019 _cell.length_a_esd ? _cell.length_b 42.019 _cell.length_b_esd ? _cell.length_c 140.472 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4XNO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91963 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91963 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 27.050 _reflns.entry_id 4XNO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.980 _reflns.d_resolution_low 100.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10571 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.000 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 29.470 _reflns.pdbx_netI_over_sigmaI 20.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.061 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.072 _reflns.pdbx_Rpim_I_all 0.022 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 105588 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.980 2.010 ? ? ? ? ? 509 ? 98.800 ? ? ? ? 0.768 ? ? ? ? ? ? ? ? 5.600 ? 0.800 ? ? 0.843 0.339 0 1 1 0.728 ? 2.010 2.050 ? ? ? ? ? 503 ? 100.000 ? ? ? ? 0.672 ? ? ? ? ? ? ? ? 6.700 ? 0.819 ? ? 0.728 0.274 0 2 1 0.802 ? 2.050 2.090 ? ? ? ? ? 515 ? 100.000 ? ? ? ? 0.672 ? ? ? ? ? ? ? ? 7.700 ? 0.839 ? ? 0.719 0.253 0 3 1 0.841 ? 2.090 2.130 ? ? ? ? ? 524 ? 100.000 ? ? ? ? 0.643 ? ? ? ? ? ? ? ? 8.600 ? 0.878 ? ? 0.683 0.226 0 4 1 0.890 ? 2.130 2.180 ? ? ? ? ? 516 ? 100.000 ? ? ? ? 0.627 ? ? ? ? ? ? ? ? 9.500 ? 0.910 ? ? 0.662 0.209 0 5 1 0.919 ? 2.180 2.230 ? ? ? ? ? 512 ? 100.000 ? ? ? ? 0.567 ? ? ? ? ? ? ? ? 10.000 ? 0.837 ? ? 0.596 0.184 0 6 1 0.947 ? 2.230 2.290 ? ? ? ? ? 529 ? 100.000 ? ? ? ? 0.475 ? ? ? ? ? ? ? ? 10.400 ? 0.881 ? ? 0.499 0.152 0 7 1 0.964 ? 2.290 2.350 ? ? ? ? ? 507 ? 100.000 ? ? ? ? 0.386 ? ? ? ? ? ? ? ? 11.100 ? 0.915 ? ? 0.404 0.119 0 8 1 0.991 ? 2.350 2.420 ? ? ? ? ? 522 ? 100.000 ? ? ? ? 0.317 ? ? ? ? ? ? ? ? 11.100 ? 0.934 ? ? 0.332 0.098 0 9 1 0.979 ? 2.420 2.490 ? ? ? ? ? 517 ? 100.000 ? ? ? ? 0.252 ? ? ? ? ? ? ? ? 11.400 ? 0.925 ? ? 0.264 0.076 0 10 1 0.985 ? 2.490 2.580 ? ? ? ? ? 531 ? 100.000 ? ? ? ? 0.182 ? ? ? ? ? ? ? ? 11.300 ? 1.026 ? ? 0.190 0.055 0 11 1 0.990 ? 2.580 2.690 ? ? ? ? ? 519 ? 100.000 ? ? ? ? 0.151 ? ? ? ? ? ? ? ? 11.200 ? 1.111 ? ? 0.159 0.047 0 12 1 0.991 ? 2.690 2.810 ? ? ? ? ? 544 ? 100.000 ? ? ? ? 0.128 ? ? ? ? ? ? ? ? 11.200 ? 1.047 ? ? 0.135 0.040 0 13 1 0.992 ? 2.810 2.960 ? ? ? ? ? 522 ? 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 11.200 ? 1.253 ? ? 0.106 0.031 0 14 1 0.995 ? 2.960 3.140 ? ? ? ? ? 526 ? 99.800 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 11.000 ? 1.355 ? ? 0.074 0.023 0 15 1 0.996 ? 3.140 3.390 ? ? ? ? ? 532 ? 100.000 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 11.000 ? 1.311 ? ? 0.063 0.019 0 16 1 0.996 ? 3.390 3.730 ? ? ? ? ? 549 ? 100.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 10.800 ? 1.564 ? ? 0.064 0.019 0 17 1 0.996 ? 3.730 4.270 ? ? ? ? ? 556 ? 99.800 ? ? ? ? 0.055 ? ? ? ? ? ? ? ? 10.600 ? 1.417 ? ? 0.058 0.018 0 18 1 0.998 ? 4.270 5.370 ? ? ? ? ? 557 ? 100.000 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 9.700 ? 1.081 ? ? 0.051 0.016 0 19 1 0.998 ? 5.370 100.000 ? ? ? ? ? 581 ? 92.500 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 9.400 ? 0.842 ? ? 0.043 0.013 0 20 1 0.998 ? # _refine.aniso_B[1][1] -2.4472 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -2.4472 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 4.6577 _refine.B_iso_max 58.800 _refine.B_iso_mean 23.3500 _refine.B_iso_min 8.420 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4XNO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9850 _refine.ls_d_res_low 35.2270 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10129 _refine.ls_number_reflns_R_free 481 _refine.ls_number_reflns_R_work 9648 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.7300 _refine.ls_percent_reflns_R_free 4.7500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2137 _refine.ls_R_factor_R_free 0.2376 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2125 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol 49.6750 _refine.solvent_model_param_ksol 0.4170 _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.5700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8106 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9850 _refine_hist.d_res_low 35.2270 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 741 _refine_hist.pdbx_number_residues_total 32 _refine_hist.pdbx_B_iso_mean_solvent 29.01 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 668 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 746 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.829 ? 1078 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.035 ? 70 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.025 ? 46 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.672 ? 426 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9848 2.2720 . . 142 2883 88.0 . . . 0.2974 . 0.2646 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2720 2.8623 . . 188 3275 100.0000 . . . 0.2958 . 0.2424 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8623 35.2323 . . 151 3490 99.0000 . . . 0.1922 . 0.1859 . . . . . . . . . . # _struct.entry_id 4XNO _struct.title ;Crystal structure of 5'-CTTATPPPZZZATAAG ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4XNO _struct_keywords.text 'A-form DNA, non-natural nucleobase pair, synthetic biology, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4XNO _struct_ref.pdbx_db_accession 4XNO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4XNO A 1 ? 16 ? 4XNO 1 ? 16 ? 1 16 2 1 4XNO B 1 ? 16 ? 4XNO 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 2 "O3'" ? ? ? 1_555 A BRU 3 P ? ? A DT 2 A BRU 3 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale2 covale both ? A BRU 3 "O3'" ? ? ? 1_555 A DA 4 P ? ? A BRU 3 A DA 4 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale3 covale both ? A DT 5 "O3'" ? ? ? 1_555 A 1WA 6 P ? ? A DT 5 A 1WA 6 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale4 covale both ? A 1WA 6 "O3'" ? ? ? 1_555 A 1WA 7 P ? ? A 1WA 6 A 1WA 7 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale5 covale both ? A 1WA 7 "O3'" ? ? ? 1_555 A 1WA 8 P ? ? A 1WA 7 A 1WA 8 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale6 covale both ? A 1WA 8 "O3'" ? ? ? 1_555 A 1W5 9 P ? ? A 1WA 8 A 1W5 9 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale7 covale one ? A 1W5 9 "O3'" ? ? ? 1_555 A 1W5 10 P ? ? A 1W5 9 A 1W5 10 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale8 covale one ? A 1W5 10 "O3'" ? ? ? 1_555 A 1W5 11 P ? ? A 1W5 10 A 1W5 11 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale9 covale one ? A 1W5 11 "O3'" ? ? ? 1_555 A DA 12 P ? ? A 1W5 11 A DA 12 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale10 covale both ? B DT 2 "O3'" ? ? ? 1_555 B BRU 3 P ? ? B DT 2 B BRU 3 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale11 covale both ? B BRU 3 "O3'" ? ? ? 1_555 B DA 4 P ? ? B BRU 3 B DA 4 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale12 covale both ? B DT 5 "O3'" ? ? ? 1_555 B 1WA 6 P ? ? B DT 5 B 1WA 6 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale13 covale both ? B 1WA 6 "O3'" ? ? ? 1_555 B 1WA 7 P ? ? B 1WA 6 B 1WA 7 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale14 covale both ? B 1WA 7 "O3'" ? ? ? 1_555 B 1WA 8 P ? ? B 1WA 7 B 1WA 8 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale15 covale both ? B 1WA 8 "O3'" ? ? ? 1_555 B 1W5 9 P ? ? B 1WA 8 B 1W5 9 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale16 covale one ? B 1W5 9 "O3'" ? ? ? 1_555 B 1W5 10 P ? ? B 1W5 9 B 1W5 10 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale17 covale one ? B 1W5 10 "O3'" ? ? ? 1_555 B 1W5 11 P ? ? B 1W5 10 B 1W5 11 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale18 covale one ? B 1W5 11 "O3'" ? ? ? 1_555 B DA 12 P ? ? B 1W5 11 B DA 12 1_555 ? ? ? ? ? ? ? 1.588 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 16 N1 ? ? A DC 1 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 16 O6 ? ? A DC 1 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 16 N2 ? ? A DC 1 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A BRU 3 N3 ? ? ? 1_555 B DA 14 N1 ? ? A BRU 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A BRU 3 O4 ? ? ? 1_555 B DA 14 N6 ? ? A BRU 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 4 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 4 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 5 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 5 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 12 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 12 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 13 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 13 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B BRU 3 N3 ? ? A DA 14 B BRU 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B BRU 3 O4 ? ? A DA 14 B BRU 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 15 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 15 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A DT 2 ? ? P A BRU 3 ? ? "O5'" A BRU 3 ? ? 90.71 104.00 -13.29 1.90 Y 2 1 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A 1WA 6 ? ? 108.35 119.70 -11.35 1.20 Y 3 1 "O3'" A DT 5 ? ? P A 1WA 6 ? ? OP2 A 1WA 6 ? ? 122.14 110.50 11.64 1.10 Y 4 1 "O3'" A 1WA 6 ? ? P A 1WA 7 ? ? OP2 A 1WA 7 ? ? 118.90 110.50 8.40 1.10 Y 5 1 "O3'" A 1W5 9 ? ? P A 1W5 10 ? ? OP1 A 1W5 10 ? ? 90.21 105.20 -14.99 2.20 Y 6 1 "O3'" A 1W5 10 ? ? P A 1W5 11 ? ? OP1 A 1W5 11 ? ? 87.95 105.20 -17.25 2.20 Y 7 1 "C3'" A 1W5 11 ? ? "O3'" A 1W5 11 ? ? P A DA 12 ? ? 103.95 119.70 -15.75 1.20 Y 8 1 "O3'" A 1W5 11 ? ? P A DA 12 ? ? "O5'" A DA 12 ? ? 119.08 104.00 15.08 1.90 Y 9 1 "O3'" A 1W5 11 ? ? P A DA 12 ? ? OP2 A DA 12 ? ? 125.44 110.50 14.94 1.10 Y 10 1 "O3'" A 1W5 11 ? ? P A DA 12 ? ? OP1 A DA 12 ? ? 69.72 105.20 -35.48 2.20 Y 11 1 "C3'" B BRU 3 ? ? "O3'" B BRU 3 ? ? P B DA 4 ? ? 103.77 119.70 -15.93 1.20 Y 12 1 "O3'" B 1WA 6 ? ? P B 1WA 7 ? ? OP2 B 1WA 7 ? ? 120.32 110.50 9.82 1.10 Y 13 1 "O3'" B 1WA 8 ? ? P B 1W5 9 ? ? OP1 B 1W5 9 ? ? 91.42 105.20 -13.78 2.20 Y 14 1 "O3'" B 1W5 9 ? ? P B 1W5 10 ? ? OP1 B 1W5 10 ? ? 89.78 105.20 -15.42 2.20 Y # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.980 _diffrn_reflns.pdbx_d_res_low 100.000 _diffrn_reflns.pdbx_number_obs 10571 _diffrn_reflns.pdbx_Rmerge_I_obs 0.069 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.06 _diffrn_reflns.pdbx_redundancy 10.00 _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 105588 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.37 100.00 ? ? 0.041 ? 0.842 9.40 ? 1 4.27 5.37 ? ? 0.048 ? 1.081 9.70 ? 1 3.73 4.27 ? ? 0.055 ? 1.417 10.60 ? 1 3.39 3.73 ? ? 0.061 ? 1.564 10.80 ? 1 3.14 3.39 ? ? 0.060 ? 1.311 11.00 ? 1 2.96 3.14 ? ? 0.071 ? 1.355 11.00 ? 1 2.81 2.96 ? ? 0.101 ? 1.253 11.20 ? 1 2.69 2.81 ? ? 0.128 ? 1.047 11.20 ? 1 2.58 2.69 ? ? 0.151 ? 1.111 11.20 ? 1 2.49 2.58 ? ? 0.182 ? 1.026 11.30 ? 1 2.42 2.49 ? ? 0.252 ? 0.925 11.40 ? 1 2.35 2.42 ? ? 0.317 ? 0.934 11.10 ? 1 2.29 2.35 ? ? 0.386 ? 0.915 11.10 ? 1 2.23 2.29 ? ? 0.475 ? 0.881 10.40 ? 1 2.18 2.23 ? ? 0.567 ? 0.837 10.00 ? 1 2.13 2.18 ? ? 0.627 ? 0.910 9.50 ? 1 2.09 2.13 ? ? 0.643 ? 0.878 8.60 ? 1 2.05 2.09 ? ? 0.672 ? 0.839 7.70 ? 1 2.01 2.05 ? ? 0.672 ? 0.819 6.70 ? 1 1.98 2.01 ? ? 0.768 ? 0.800 5.60 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1W5 N N N N 1 1W5 P P N N 2 1W5 C1 C Y N 3 1W5 C2 C Y N 4 1W5 O2 O N N 5 1W5 N3 N Y N 6 1W5 C4 C Y N 7 1W5 N4 N N N 8 1W5 C5 C Y N 9 1W5 C6 C Y N 10 1W5 "C1'" C N R 11 1W5 "C2'" C N N 12 1W5 "C3'" C N S 13 1W5 "O3'" O N N 14 1W5 "C4'" C N R 15 1W5 "O4'" O N N 16 1W5 "C5'" C N N 17 1W5 "O5'" O N N 18 1W5 ON1 O N N 19 1W5 ON2 O N N 20 1W5 OP1 O N N 21 1W5 OP2 O N N 22 1W5 OP3 O N N 23 1W5 H1 H N N 24 1W5 H2 H N N 25 1W5 H4 H N N 26 1W5 H5 H N N 27 1W5 H6 H N N 28 1W5 H7 H N N 29 1W5 H8 H N N 30 1W5 H9 H N N 31 1W5 H10 H N N 32 1W5 H11 H N N 33 1W5 H12 H N N 34 1W5 HOP1 H N N 35 1W5 HOP3 H N N 36 1W5 H15 H N N 37 1WA OP3 O N N 38 1WA P P N N 39 1WA N1 N Y N 40 1WA C2 C Y N 41 1WA N2 N N N 42 1WA N3 N Y N 43 1WA C4 C Y N 44 1WA N5 N Y N 45 1WA C6 C Y N 46 1WA O6 O N N 47 1WA C7 C Y N 48 1WA C8 C Y N 49 1WA N9 N Y N 50 1WA "C1'" C N R 51 1WA "C2'" C N N 52 1WA "C3'" C N S 53 1WA "O3'" O N N 54 1WA "C4'" C N R 55 1WA "O4'" O N N 56 1WA "C5'" C N N 57 1WA "O5'" O N N 58 1WA OP1 O N N 59 1WA OP2 O N N 60 1WA HOP3 H N N 61 1WA HN2 H N N 62 1WA HN2A H N N 63 1WA HN3 H N N 64 1WA H7 H N N 65 1WA H8 H N N 66 1WA "H1'" H N N 67 1WA "H2'" H N N 68 1WA "H2'A" H N N 69 1WA "H3'" H N N 70 1WA "HO3'" H N N 71 1WA "H4'" H N N 72 1WA "H5'" H N N 73 1WA "H5'A" H N N 74 1WA HOP1 H N N 75 1WA HO6 H N N 76 BRU N1 N N N 77 BRU C2 C N N 78 BRU N3 N N N 79 BRU C4 C N N 80 BRU C5 C N N 81 BRU C6 C N N 82 BRU O2 O N N 83 BRU O4 O N N 84 BRU BR BR N N 85 BRU "C1'" C N R 86 BRU "C2'" C N N 87 BRU "C3'" C N S 88 BRU "C4'" C N R 89 BRU "O3'" O N N 90 BRU "O4'" O N N 91 BRU "C5'" C N N 92 BRU "O5'" O N N 93 BRU P P N N 94 BRU OP1 O N N 95 BRU OP2 O N N 96 BRU OP3 O N N 97 BRU HN3 H N N 98 BRU H6 H N N 99 BRU "H1'" H N N 100 BRU "H2'" H N N 101 BRU "H2''" H N N 102 BRU "H3'" H N N 103 BRU "H4'" H N N 104 BRU "HO3'" H N N 105 BRU "H5'" H N N 106 BRU "H5''" H N N 107 BRU HOP2 H N N 108 BRU HOP3 H N N 109 DA OP3 O N N 110 DA P P N N 111 DA OP1 O N N 112 DA OP2 O N N 113 DA "O5'" O N N 114 DA "C5'" C N N 115 DA "C4'" C N R 116 DA "O4'" O N N 117 DA "C3'" C N S 118 DA "O3'" O N N 119 DA "C2'" C N N 120 DA "C1'" C N R 121 DA N9 N Y N 122 DA C8 C Y N 123 DA N7 N Y N 124 DA C5 C Y N 125 DA C6 C Y N 126 DA N6 N N N 127 DA N1 N Y N 128 DA C2 C Y N 129 DA N3 N Y N 130 DA C4 C Y N 131 DA HOP3 H N N 132 DA HOP2 H N N 133 DA "H5'" H N N 134 DA "H5''" H N N 135 DA "H4'" H N N 136 DA "H3'" H N N 137 DA "HO3'" H N N 138 DA "H2'" H N N 139 DA "H2''" H N N 140 DA "H1'" H N N 141 DA H8 H N N 142 DA H61 H N N 143 DA H62 H N N 144 DA H2 H N N 145 DC OP3 O N N 146 DC P P N N 147 DC OP1 O N N 148 DC OP2 O N N 149 DC "O5'" O N N 150 DC "C5'" C N N 151 DC "C4'" C N R 152 DC "O4'" O N N 153 DC "C3'" C N S 154 DC "O3'" O N N 155 DC "C2'" C N N 156 DC "C1'" C N R 157 DC N1 N N N 158 DC C2 C N N 159 DC O2 O N N 160 DC N3 N N N 161 DC C4 C N N 162 DC N4 N N N 163 DC C5 C N N 164 DC C6 C N N 165 DC HOP3 H N N 166 DC HOP2 H N N 167 DC "H5'" H N N 168 DC "H5''" H N N 169 DC "H4'" H N N 170 DC "H3'" H N N 171 DC "HO3'" H N N 172 DC "H2'" H N N 173 DC "H2''" H N N 174 DC "H1'" H N N 175 DC H41 H N N 176 DC H42 H N N 177 DC H5 H N N 178 DC H6 H N N 179 DG OP3 O N N 180 DG P P N N 181 DG OP1 O N N 182 DG OP2 O N N 183 DG "O5'" O N N 184 DG "C5'" C N N 185 DG "C4'" C N R 186 DG "O4'" O N N 187 DG "C3'" C N S 188 DG "O3'" O N N 189 DG "C2'" C N N 190 DG "C1'" C N R 191 DG N9 N Y N 192 DG C8 C Y N 193 DG N7 N Y N 194 DG C5 C Y N 195 DG C6 C N N 196 DG O6 O N N 197 DG N1 N N N 198 DG C2 C N N 199 DG N2 N N N 200 DG N3 N N N 201 DG C4 C Y N 202 DG HOP3 H N N 203 DG HOP2 H N N 204 DG "H5'" H N N 205 DG "H5''" H N N 206 DG "H4'" H N N 207 DG "H3'" H N N 208 DG "HO3'" H N N 209 DG "H2'" H N N 210 DG "H2''" H N N 211 DG "H1'" H N N 212 DG H8 H N N 213 DG H1 H N N 214 DG H21 H N N 215 DG H22 H N N 216 DT OP3 O N N 217 DT P P N N 218 DT OP1 O N N 219 DT OP2 O N N 220 DT "O5'" O N N 221 DT "C5'" C N N 222 DT "C4'" C N R 223 DT "O4'" O N N 224 DT "C3'" C N S 225 DT "O3'" O N N 226 DT "C2'" C N N 227 DT "C1'" C N R 228 DT N1 N N N 229 DT C2 C N N 230 DT O2 O N N 231 DT N3 N N N 232 DT C4 C N N 233 DT O4 O N N 234 DT C5 C N N 235 DT C7 C N N 236 DT C6 C N N 237 DT HOP3 H N N 238 DT HOP2 H N N 239 DT "H5'" H N N 240 DT "H5''" H N N 241 DT "H4'" H N N 242 DT "H3'" H N N 243 DT "HO3'" H N N 244 DT "H2'" H N N 245 DT "H2''" H N N 246 DT "H1'" H N N 247 DT H3 H N N 248 DT H71 H N N 249 DT H72 H N N 250 DT H73 H N N 251 DT H6 H N N 252 HOH O O N N 253 HOH H1 H N N 254 HOH H2 H N N 255 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1W5 "O3'" "C3'" sing N N 1 1W5 N4 C4 sing N N 2 1W5 "C3'" "C2'" sing N N 3 1W5 "C3'" "C4'" sing N N 4 1W5 "C2'" "C1'" sing N N 5 1W5 N3 C4 doub Y N 6 1W5 N3 C2 sing Y N 7 1W5 O2 C2 sing N N 8 1W5 C4 C5 sing Y N 9 1W5 C2 C1 doub Y N 10 1W5 ON1 N doub N N 11 1W5 C5 N sing N N 12 1W5 C5 C6 doub Y N 13 1W5 C1 C6 sing Y N 14 1W5 C1 "C1'" sing N N 15 1W5 N ON2 sing N N 16 1W5 OP2 P doub N N 17 1W5 "C1'" "O4'" sing N N 18 1W5 "O5'" P sing N N 19 1W5 "O5'" "C5'" sing N N 20 1W5 "C4'" "C5'" sing N N 21 1W5 "C4'" "O4'" sing N N 22 1W5 P OP1 sing N N 23 1W5 P OP3 sing N N 24 1W5 N4 H1 sing N N 25 1W5 N4 H2 sing N N 26 1W5 C6 H4 sing N N 27 1W5 "C1'" H5 sing N N 28 1W5 "C2'" H6 sing N N 29 1W5 "C2'" H7 sing N N 30 1W5 "C3'" H8 sing N N 31 1W5 "O3'" H9 sing N N 32 1W5 "C4'" H10 sing N N 33 1W5 "C5'" H11 sing N N 34 1W5 "C5'" H12 sing N N 35 1W5 OP1 HOP1 sing N N 36 1W5 OP3 HOP3 sing N N 37 1W5 O2 H15 sing N N 38 1WA P OP3 sing N N 39 1WA OP3 HOP3 sing N N 40 1WA OP2 P doub N N 41 1WA "O5'" P sing N N 42 1WA P OP1 sing N N 43 1WA C2 N1 doub Y N 44 1WA N1 C6 sing Y N 45 1WA N2 C2 sing N N 46 1WA C2 N3 sing Y N 47 1WA N2 HN2 sing N N 48 1WA N2 HN2A sing N N 49 1WA N3 C4 sing Y N 50 1WA N3 HN3 sing N N 51 1WA C4 N5 sing Y N 52 1WA C4 N9 doub Y N 53 1WA C6 N5 doub Y N 54 1WA N5 C7 sing Y N 55 1WA C6 O6 sing N N 56 1WA C7 C8 doub Y N 57 1WA C7 H7 sing N N 58 1WA N9 C8 sing Y N 59 1WA C8 H8 sing N N 60 1WA N9 "C1'" sing N N 61 1WA "C2'" "C1'" sing N N 62 1WA "C1'" "O4'" sing N N 63 1WA "C1'" "H1'" sing N N 64 1WA "C2'" "C3'" sing N N 65 1WA "C2'" "H2'" sing N N 66 1WA "C2'" "H2'A" sing N N 67 1WA "O3'" "C3'" sing N N 68 1WA "C3'" "C4'" sing N N 69 1WA "C3'" "H3'" sing N N 70 1WA "O3'" "HO3'" sing N N 71 1WA "C4'" "O4'" sing N N 72 1WA "C4'" "C5'" sing N N 73 1WA "C4'" "H4'" sing N N 74 1WA "O5'" "C5'" sing N N 75 1WA "C5'" "H5'" sing N N 76 1WA "C5'" "H5'A" sing N N 77 1WA OP1 HOP1 sing N N 78 1WA O6 HO6 sing N N 79 BRU N1 C2 sing N N 80 BRU N1 C6 sing N N 81 BRU N1 "C1'" sing N N 82 BRU C2 N3 sing N N 83 BRU C2 O2 doub N N 84 BRU N3 C4 sing N N 85 BRU N3 HN3 sing N N 86 BRU C4 C5 sing N N 87 BRU C4 O4 doub N N 88 BRU C5 C6 doub N N 89 BRU C5 BR sing N N 90 BRU C6 H6 sing N N 91 BRU "C1'" "C2'" sing N N 92 BRU "C1'" "O4'" sing N N 93 BRU "C1'" "H1'" sing N N 94 BRU "C2'" "C3'" sing N N 95 BRU "C2'" "H2'" sing N N 96 BRU "C2'" "H2''" sing N N 97 BRU "C3'" "C4'" sing N N 98 BRU "C3'" "O3'" sing N N 99 BRU "C3'" "H3'" sing N N 100 BRU "C4'" "O4'" sing N N 101 BRU "C4'" "C5'" sing N N 102 BRU "C4'" "H4'" sing N N 103 BRU "O3'" "HO3'" sing N N 104 BRU "C5'" "O5'" sing N N 105 BRU "C5'" "H5'" sing N N 106 BRU "C5'" "H5''" sing N N 107 BRU "O5'" P sing N N 108 BRU P OP1 doub N N 109 BRU P OP2 sing N N 110 BRU P OP3 sing N N 111 BRU OP2 HOP2 sing N N 112 BRU OP3 HOP3 sing N N 113 DA OP3 P sing N N 114 DA OP3 HOP3 sing N N 115 DA P OP1 doub N N 116 DA P OP2 sing N N 117 DA P "O5'" sing N N 118 DA OP2 HOP2 sing N N 119 DA "O5'" "C5'" sing N N 120 DA "C5'" "C4'" sing N N 121 DA "C5'" "H5'" sing N N 122 DA "C5'" "H5''" sing N N 123 DA "C4'" "O4'" sing N N 124 DA "C4'" "C3'" sing N N 125 DA "C4'" "H4'" sing N N 126 DA "O4'" "C1'" sing N N 127 DA "C3'" "O3'" sing N N 128 DA "C3'" "C2'" sing N N 129 DA "C3'" "H3'" sing N N 130 DA "O3'" "HO3'" sing N N 131 DA "C2'" "C1'" sing N N 132 DA "C2'" "H2'" sing N N 133 DA "C2'" "H2''" sing N N 134 DA "C1'" N9 sing N N 135 DA "C1'" "H1'" sing N N 136 DA N9 C8 sing Y N 137 DA N9 C4 sing Y N 138 DA C8 N7 doub Y N 139 DA C8 H8 sing N N 140 DA N7 C5 sing Y N 141 DA C5 C6 sing Y N 142 DA C5 C4 doub Y N 143 DA C6 N6 sing N N 144 DA C6 N1 doub Y N 145 DA N6 H61 sing N N 146 DA N6 H62 sing N N 147 DA N1 C2 sing Y N 148 DA C2 N3 doub Y N 149 DA C2 H2 sing N N 150 DA N3 C4 sing Y N 151 DC OP3 P sing N N 152 DC OP3 HOP3 sing N N 153 DC P OP1 doub N N 154 DC P OP2 sing N N 155 DC P "O5'" sing N N 156 DC OP2 HOP2 sing N N 157 DC "O5'" "C5'" sing N N 158 DC "C5'" "C4'" sing N N 159 DC "C5'" "H5'" sing N N 160 DC "C5'" "H5''" sing N N 161 DC "C4'" "O4'" sing N N 162 DC "C4'" "C3'" sing N N 163 DC "C4'" "H4'" sing N N 164 DC "O4'" "C1'" sing N N 165 DC "C3'" "O3'" sing N N 166 DC "C3'" "C2'" sing N N 167 DC "C3'" "H3'" sing N N 168 DC "O3'" "HO3'" sing N N 169 DC "C2'" "C1'" sing N N 170 DC "C2'" "H2'" sing N N 171 DC "C2'" "H2''" sing N N 172 DC "C1'" N1 sing N N 173 DC "C1'" "H1'" sing N N 174 DC N1 C2 sing N N 175 DC N1 C6 sing N N 176 DC C2 O2 doub N N 177 DC C2 N3 sing N N 178 DC N3 C4 doub N N 179 DC C4 N4 sing N N 180 DC C4 C5 sing N N 181 DC N4 H41 sing N N 182 DC N4 H42 sing N N 183 DC C5 C6 doub N N 184 DC C5 H5 sing N N 185 DC C6 H6 sing N N 186 DG OP3 P sing N N 187 DG OP3 HOP3 sing N N 188 DG P OP1 doub N N 189 DG P OP2 sing N N 190 DG P "O5'" sing N N 191 DG OP2 HOP2 sing N N 192 DG "O5'" "C5'" sing N N 193 DG "C5'" "C4'" sing N N 194 DG "C5'" "H5'" sing N N 195 DG "C5'" "H5''" sing N N 196 DG "C4'" "O4'" sing N N 197 DG "C4'" "C3'" sing N N 198 DG "C4'" "H4'" sing N N 199 DG "O4'" "C1'" sing N N 200 DG "C3'" "O3'" sing N N 201 DG "C3'" "C2'" sing N N 202 DG "C3'" "H3'" sing N N 203 DG "O3'" "HO3'" sing N N 204 DG "C2'" "C1'" sing N N 205 DG "C2'" "H2'" sing N N 206 DG "C2'" "H2''" sing N N 207 DG "C1'" N9 sing N N 208 DG "C1'" "H1'" sing N N 209 DG N9 C8 sing Y N 210 DG N9 C4 sing Y N 211 DG C8 N7 doub Y N 212 DG C8 H8 sing N N 213 DG N7 C5 sing Y N 214 DG C5 C6 sing N N 215 DG C5 C4 doub Y N 216 DG C6 O6 doub N N 217 DG C6 N1 sing N N 218 DG N1 C2 sing N N 219 DG N1 H1 sing N N 220 DG C2 N2 sing N N 221 DG C2 N3 doub N N 222 DG N2 H21 sing N N 223 DG N2 H22 sing N N 224 DG N3 C4 sing N N 225 DT OP3 P sing N N 226 DT OP3 HOP3 sing N N 227 DT P OP1 doub N N 228 DT P OP2 sing N N 229 DT P "O5'" sing N N 230 DT OP2 HOP2 sing N N 231 DT "O5'" "C5'" sing N N 232 DT "C5'" "C4'" sing N N 233 DT "C5'" "H5'" sing N N 234 DT "C5'" "H5''" sing N N 235 DT "C4'" "O4'" sing N N 236 DT "C4'" "C3'" sing N N 237 DT "C4'" "H4'" sing N N 238 DT "O4'" "C1'" sing N N 239 DT "C3'" "O3'" sing N N 240 DT "C3'" "C2'" sing N N 241 DT "C3'" "H3'" sing N N 242 DT "O3'" "HO3'" sing N N 243 DT "C2'" "C1'" sing N N 244 DT "C2'" "H2'" sing N N 245 DT "C2'" "H2''" sing N N 246 DT "C1'" N1 sing N N 247 DT "C1'" "H1'" sing N N 248 DT N1 C2 sing N N 249 DT N1 C6 sing N N 250 DT C2 O2 doub N N 251 DT C2 N3 sing N N 252 DT N3 C4 sing N N 253 DT N3 H3 sing N N 254 DT C4 O4 doub N N 255 DT C4 C5 sing N N 256 DT C5 C7 sing N N 257 DT C5 C6 doub N N 258 DT C7 H71 sing N N 259 DT C7 H72 sing N N 260 DT C7 H73 sing N N 261 DT C6 H6 sing N N 262 HOH O H1 sing N N 263 HOH O H2 sing N N 264 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4XNO 'double helix' 4XNO 'a-form double helix' 4XNO 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 16 1_555 0.131 -0.005 0.395 -23.407 2.116 0.996 1 A_DC1:DG16_B A 1 ? B 16 ? 19 1 1 A DT 2 1_555 B DA 15 1_555 -0.090 -0.147 0.112 4.617 -6.284 0.780 2 A_DT2:DA15_B A 2 ? B 15 ? 20 1 1 A BRU 3 1_555 B DA 14 1_555 -0.120 -0.096 -0.028 3.555 -16.976 1.267 3 A_BRU3:DA14_B A 3 ? B 14 ? 20 1 1 A DA 4 1_555 B DT 13 1_555 0.117 -0.171 0.112 -9.057 -6.643 2.812 4 A_DA4:DT13_B A 4 ? B 13 ? 20 1 1 A DT 5 1_555 B DA 12 1_555 -0.157 -0.111 0.005 4.307 -12.370 7.384 5 A_DT5:DA12_B A 5 ? B 12 ? 20 1 1 A DA 12 1_555 B DT 5 1_555 -0.030 -0.157 -0.088 -7.880 -17.830 6.144 6 A_DA12:DT5_B A 12 ? B 5 ? 20 1 1 A DT 13 1_555 B DA 4 1_555 -0.126 -0.242 0.096 -2.768 -16.222 5.186 7 A_DT13:DA4_B A 13 ? B 4 ? 20 1 1 A DA 14 1_555 B BRU 3 1_555 0.138 -0.121 -0.070 -7.899 -11.401 8.327 8 A_DA14:BRU3_B A 14 ? B 3 ? 20 1 1 A DA 15 1_555 B DT 2 1_555 -0.048 -0.184 0.425 5.918 -17.029 9.246 9 A_DA15:DT2_B A 15 ? B 2 ? 20 1 1 A DG 16 1_555 B DC 1 1_555 -0.238 -0.162 0.545 12.609 -7.666 -1.494 10 A_DG16:DC1_B A 16 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 16 1_555 A DT 2 1_555 B DA 15 1_555 -0.934 1.019 2.923 0.946 16.480 15.065 -3.715 2.779 2.690 47.818 -2.745 22.313 1 AA_DC1DT2:DA15DG16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DT 2 1_555 B DA 15 1_555 A BRU 3 1_555 B DA 14 1_555 -0.165 -0.060 3.318 -1.413 -2.639 31.133 0.396 0.035 3.316 -4.903 2.624 31.273 2 AA_DT2BRU3:DA14DA15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A BRU 3 1_555 B DA 14 1_555 A DA 4 1_555 B DT 13 1_555 0.598 -1.149 3.484 0.856 6.500 38.415 -2.542 -0.789 3.266 9.792 -1.289 38.950 3 AA_BRU3DA4:DT13DA14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DA 4 1_555 B DT 13 1_555 A DT 5 1_555 B DA 12 1_555 0.264 -1.044 3.048 0.440 6.528 30.474 -3.064 -0.416 2.774 12.242 -0.825 31.152 4 AA_DA4DT5:DA12DT13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DA 12 1_555 B DT 5 1_555 A DT 13 1_555 B DA 4 1_555 -0.487 -1.267 3.159 -0.893 5.451 32.039 -3.157 0.724 2.922 9.785 1.603 32.499 5 AA_DA12DT13:DA4DT5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 A DT 13 1_555 B DA 4 1_555 A DA 14 1_555 B BRU 3 1_555 0.219 -0.943 3.328 2.513 9.781 33.111 -3.068 0.013 2.948 16.686 -4.287 34.575 6 AA_DT13DA14:BRU3DA4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 A DA 14 1_555 B BRU 3 1_555 A DA 15 1_555 B DT 2 1_555 0.544 -1.030 2.921 -0.746 5.197 30.199 -2.835 -1.157 2.697 9.882 1.419 30.641 7 AA_DA14DA15:DT2BRU3_BB A 14 ? B 3 ? A 15 ? B 2 ? 1 A DA 15 1_555 B DT 2 1_555 A DG 16 1_555 B DC 1 1_555 -0.388 -1.312 3.135 -1.029 0.982 32.291 -2.522 0.524 3.105 1.764 1.849 32.322 8 AA_DA15DG16:DC1DT2_BB A 15 ? B 2 ? A 16 ? B 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01GM111386 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 4XNO _atom_sites.fract_transf_matrix[1][1] 0.023799 _atom_sites.fract_transf_matrix[1][2] 0.013740 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027480 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C N O P # loop_