data_4XNR # _entry.id 4XNR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4XNR pdb_00004xnr 10.2210/pdb4xnr/pdb WWPDB D_1000206020 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 4XL0 _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4XNR _pdbx_database_status.recvd_initial_deposition_date 2015-01-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, J.' 1 'Liu, Y.' 2 'Wang, Y.-X.' 3 ;Ferre-D'Amare, A.R. ; 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 522 _citation.language ? _citation.page_first 368 _citation.page_last 372 _citation.title 'Synthesis and applications of RNAs with position-selective labelling and mosaic composition.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature14352 _citation.pdbx_database_id_PubMed 25938715 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Holmstrom, E.' 2 ? primary 'Zhang, J.' 3 ? primary 'Yu, P.' 4 ? primary 'Wang, J.' 5 ? primary 'Dyba, M.A.' 6 ? primary 'Chen, D.' 7 ? primary 'Ying, J.' 8 ? primary 'Lockett, S.' 9 ? primary 'Nesbitt, D.J.' 10 ? primary ;Ferre-D'Amare, A.R. ; 11 ? primary 'Sousa, R.' 12 ? primary 'Stagno, J.R.' 13 ? primary 'Wang, Y.X.' 14 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4XNR _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.482 _cell.length_a_esd ? _cell.length_b 154.682 _cell.length_b_esd ? _cell.length_c 25.178 _cell.length_c_esd ? _cell.volume 192711.776 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Vibrio Vulnificus Adenine Riboswitch' 22687.383 1 ? ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 4 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4XNR _struct_ref.pdbx_db_accession 4XNR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4XNR _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4XNR _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 83 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 83 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4XNR _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.08 _exptl_crystal.description 'Rectangular crystals with maximal dimensions of 250 x 50 x 50 micrometers' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Mg, PEG, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Kohzu HLD8-24 monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 57.658507554 _reflns.entry_id 4XNR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.21 _reflns.d_resolution_low 49.5 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10358 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.92 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.21 _reflns_shell.d_res_low 2.29 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.67 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.04 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 65.76 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4XNR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.21 _refine.ls_d_res_low 47.13 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10358 _refine.ls_number_reflns_R_free 985 _refine.ls_number_reflns_R_work 16846 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6 _refine.ls_percent_reflns_R_free 9.95 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_R_free 0.22 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4TZX _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library' _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.32 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.37 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1502 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1582 _refine_hist.d_res_high 2.21 _refine_hist.d_res_low 47.13 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.000914435620831 ? 1688 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.274360204816 ? 2623 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0145149350427 ? 355 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00142225043879 ? 72 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.0843343738 ? 849 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.21 2.2666 . . 144 1291 98.49 . . . 0.382 . 0.368 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2666 2.3332 . . 144 1281 99.92 . . . 0.332 . 0.362 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3332 2.4086 . . 143 1284 100.0 . . . 0.344 . 0.339 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4086 2.4946 . . 151 1348 99.93 . . . 0.407 . 0.326 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4946 2.5945 . . 138 1253 99.50 . . . 0.392 . 0.325 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5945 2.7126 . . 136 1304 99.86 . . . 0.368 . 0.337 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7126 2.8556 . . 142 1313 99.86 . . . 0.334 . 0.30 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8556 3.0344 . . 140 1293 99.79 . . . 0.306 . 0.277 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0344 3.2687 . . 139 1310 99.25 . . . 0.214 . 0.194 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2687 3.5975 . . 146 1300 99.52 . . . 0.177 . 0.176 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5975 4.1178 . . 145 1302 99.93 . . . 0.208 . 0.171 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1178 5.187 . . 145 1276 99.93 . . . 0.183 . 0.140 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.187 47.13 . . 149 1291 99.11 . . . 0.135 . 0.151 . . . . . . . . . . # _struct.entry_id 4XNR _struct.title ;Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4XNR _struct_keywords.text 'RNA, Riboswitch' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 11 OP2 ? ? ? 1_555 G MG . MG ? ? X A 23 X MG 106 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc2 metalc ? ? A A 12 OP1 ? ? ? 1_555 D MG . MG ? ? X A 24 X MG 103 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc3 metalc ? ? A U 35 O2 ? ? ? 1_555 E MG . MG ? ? X U 47 X MG 104 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 102 X HOH 224 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 102 X HOH 238 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 102 X HOH 243 1_555 ? ? ? ? ? ? ? 2.144 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 103 X HOH 225 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 103 X HOH 226 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 103 X HOH 227 1_555 ? ? ? ? ? ? ? 2.159 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 103 X HOH 228 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 103 X HOH 260 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc12 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 105 X HOH 229 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 105 X HOH 230 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 105 X HOH 231 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 105 X HOH 257 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc16 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 106 X HOH 223 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc17 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 106 X HOH 237 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 106 X HOH 244 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 106 X HOH 255 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc20 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 107 X HOH 207 4_455 ? ? ? ? ? ? ? 2.173 ? ? metalc21 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 107 X HOH 208 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc22 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 107 X HOH 210 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc23 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 107 X HOH 217 4_455 ? ? ? ? ? ? ? 2.155 ? ? metalc24 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 107 X HOH 218 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc25 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 107 X HOH 219 4_455 ? ? ? ? ? ? ? 2.201 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 71 O2 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 69 N3 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 69 O2 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 69 N4 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 68 N3 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 68 O4 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 O4 ? ? ? 1_555 A G 34 N1 ? ? X U 22 X G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog25 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog26 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 30 O6 ? ? X U 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 30 N1 ? ? X U 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? X U 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? X U 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? X U 34 X G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 48 N4 ? ? X G 37 X C 60 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog48 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog55 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 39 O4 ? ? X U 47 X U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog60 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? X U 49 X A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog61 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? X C 50 X U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog62 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? X C 61 X A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X ADE 101 ? 9 'binding site for residue ADE X 101' AC2 Software X MG 102 ? 3 'binding site for residue MG X 102' AC3 Software X MG 103 ? 6 'binding site for residue MG X 103' AC4 Software X MG 104 ? 5 'binding site for residue MG X 104' AC5 Software X MG 105 ? 4 'binding site for residue MG X 105' AC6 Software X MG 106 ? 5 'binding site for residue MG X 106' AC7 Software X MG 107 ? 6 'binding site for residue MG X 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 A A 9 ? A X 21 . ? 1_555 ? 2 AC1 9 U A 10 ? U X 22 . ? 1_555 ? 3 AC1 9 U A 35 ? U X 47 . ? 1_555 ? 4 AC1 9 U A 39 ? U X 51 . ? 1_555 ? 5 AC1 9 A A 40 ? A X 52 . ? 1_555 ? 6 AC1 9 A A 61 ? A X 73 . ? 1_555 ? 7 AC1 9 U A 62 ? U X 74 . ? 1_555 ? 8 AC1 9 U A 63 ? U X 75 . ? 1_555 ? 9 AC1 9 MG E . ? MG X 104 . ? 1_555 ? 10 AC2 3 HOH I . ? HOH X 224 . ? 1_555 ? 11 AC2 3 HOH I . ? HOH X 238 . ? 1_555 ? 12 AC2 3 HOH I . ? HOH X 243 . ? 1_555 ? 13 AC3 6 A A 12 ? A X 24 . ? 1_555 ? 14 AC3 6 HOH I . ? HOH X 225 . ? 1_555 ? 15 AC3 6 HOH I . ? HOH X 226 . ? 1_555 ? 16 AC3 6 HOH I . ? HOH X 227 . ? 1_555 ? 17 AC3 6 HOH I . ? HOH X 228 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH X 260 . ? 1_555 ? 19 AC4 5 A A 9 ? A X 21 . ? 1_555 ? 20 AC4 5 U A 35 ? U X 47 . ? 1_555 ? 21 AC4 5 U A 37 ? U X 49 . ? 1_555 ? 22 AC4 5 C A 38 ? C X 50 . ? 1_555 ? 23 AC4 5 ADE B . ? ADE X 101 . ? 1_555 ? 24 AC5 4 HOH I . ? HOH X 229 . ? 1_555 ? 25 AC5 4 HOH I . ? HOH X 230 . ? 1_555 ? 26 AC5 4 HOH I . ? HOH X 231 . ? 1_555 ? 27 AC5 4 HOH I . ? HOH X 257 . ? 1_555 ? 28 AC6 5 A A 11 ? A X 23 . ? 1_555 ? 29 AC6 5 HOH I . ? HOH X 223 . ? 1_555 ? 30 AC6 5 HOH I . ? HOH X 237 . ? 1_555 ? 31 AC6 5 HOH I . ? HOH X 244 . ? 1_555 ? 32 AC6 5 HOH I . ? HOH X 255 . ? 1_555 ? 33 AC7 6 HOH I . ? HOH X 207 . ? 4_455 ? 34 AC7 6 HOH I . ? HOH X 208 . ? 1_555 ? 35 AC7 6 HOH I . ? HOH X 210 . ? 1_555 ? 36 AC7 6 HOH I . ? HOH X 217 . ? 4_455 ? 37 AC7 6 HOH I . ? HOH X 218 . ? 1_555 ? 38 AC7 6 HOH I . ? HOH X 219 . ? 4_455 ? # _atom_sites.entry_id 4XNR _atom_sites.fract_transf_matrix[1][1] 0.020209 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006465 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039717 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ? ? MG ? ? ? ? ? ? ? ? ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ? ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ? ? O1- ? ? 5.12366 3.84317 3.49406 27.47979 0.0 ? ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ? ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G X . n A 1 2 G 2 14 14 G G X . n A 1 3 G 3 15 15 G G X . n A 1 4 A 4 16 16 A A X . n A 1 5 A 5 17 17 A A X . n A 1 6 G 6 18 18 G G X . n A 1 7 A 7 19 19 A A X . n A 1 8 U 8 20 20 U U X . n A 1 9 A 9 21 21 A A X . n A 1 10 U 10 22 22 U U X . n A 1 11 A 11 23 23 A A X . n A 1 12 A 12 24 24 A A X . n A 1 13 U 13 25 25 U U X . n A 1 14 C 14 26 26 C C X . n A 1 15 C 15 27 27 C C X . n A 1 16 U 16 28 28 U U X . n A 1 17 A 17 29 29 A A X . n A 1 18 A 18 30 30 A A X . n A 1 19 U 19 31 31 U U X . n A 1 20 G 20 32 32 G G X . n A 1 21 A 21 33 33 A A X . n A 1 22 U 22 34 34 U U X . n A 1 23 A 23 35 35 A A X . n A 1 24 U 24 36 36 U U X . n A 1 25 G 25 37 37 G G X . n A 1 26 G 26 38 38 G G X . n A 1 27 U 27 39 39 U U X . n A 1 28 U 28 40 40 U U X . n A 1 29 U 29 41 41 U U X . n A 1 30 G 30 42 42 G G X . n A 1 31 G 31 43 43 G G X . n A 1 32 G 32 44 44 G G X . n A 1 33 A 33 45 45 A A X . n A 1 34 G 34 46 46 G G X . n A 1 35 U 35 47 47 U U X . n A 1 36 U 36 48 48 U U X . n A 1 37 U 37 49 49 U U X . n A 1 38 C 38 50 50 C C X . n A 1 39 U 39 51 51 U U X . n A 1 40 A 40 52 52 A A X . n A 1 41 C 41 53 53 C C X . n A 1 42 C 42 54 54 C C X . n A 1 43 A 43 55 55 A A X . n A 1 44 A 44 56 56 A A X . n A 1 45 G 45 57 57 G G X . n A 1 46 A 46 58 58 A A X . n A 1 47 G 47 59 59 G G X . n A 1 48 C 48 60 60 C C X . n A 1 49 C 49 61 61 C C X . n A 1 50 U 50 62 62 U U X . n A 1 51 U 51 63 63 U U X . n A 1 52 A 52 64 64 A A X . n A 1 53 A 53 65 65 A A X . n A 1 54 A 54 66 66 A A X . n A 1 55 C 55 67 67 C C X . n A 1 56 U 56 68 68 U U X . n A 1 57 C 57 69 69 C C X . n A 1 58 U 58 70 70 U U X . n A 1 59 U 59 71 71 U U X . n A 1 60 G 60 72 72 G G X . n A 1 61 A 61 73 73 A A X . n A 1 62 U 62 74 74 U U X . n A 1 63 U 63 75 75 U U X . n A 1 64 A 64 76 76 A A X . n A 1 65 U 65 77 77 U U X . n A 1 66 C 66 78 78 C C X . n A 1 67 U 67 79 79 U U X . n A 1 68 U 68 80 80 U U X . n A 1 69 C 69 81 81 C C X . n A 1 70 C 70 82 82 C C X . n A 1 71 C 71 83 83 C C X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 101 90 ADE ADE X . C 3 MG 1 102 101 MG MG X . D 3 MG 1 103 102 MG MG X . E 3 MG 1 104 103 MG MG X . F 3 MG 1 105 104 MG MG X . G 3 MG 1 106 105 MG MG X . H 3 MG 1 107 106 MG MG X . I 4 HOH 1 201 55 HOH HOH X . I 4 HOH 2 202 23 HOH HOH X . I 4 HOH 3 203 37 HOH HOH X . I 4 HOH 4 204 27 HOH HOH X . I 4 HOH 5 205 3 HOH HOH X . I 4 HOH 6 206 14 HOH HOH X . I 4 HOH 7 207 61 HOH HOH X . I 4 HOH 8 208 59 HOH HOH X . I 4 HOH 9 209 28 HOH HOH X . I 4 HOH 10 210 62 HOH HOH X . I 4 HOH 11 211 57 HOH HOH X . I 4 HOH 12 212 21 HOH HOH X . I 4 HOH 13 213 38 HOH HOH X . I 4 HOH 14 214 17 HOH HOH X . I 4 HOH 15 215 33 HOH HOH X . I 4 HOH 16 216 34 HOH HOH X . I 4 HOH 17 217 63 HOH HOH X . I 4 HOH 18 218 60 HOH HOH X . I 4 HOH 19 219 64 HOH HOH X . I 4 HOH 20 220 1 HOH HOH X . I 4 HOH 21 221 2 HOH HOH X . I 4 HOH 22 222 4 HOH HOH X . I 4 HOH 23 223 5 HOH HOH X . I 4 HOH 24 224 6 HOH HOH X . I 4 HOH 25 225 7 HOH HOH X . I 4 HOH 26 226 8 HOH HOH X . I 4 HOH 27 227 9 HOH HOH X . I 4 HOH 28 228 10 HOH HOH X . I 4 HOH 29 229 11 HOH HOH X . I 4 HOH 30 230 12 HOH HOH X . I 4 HOH 31 231 13 HOH HOH X . I 4 HOH 32 232 15 HOH HOH X . I 4 HOH 33 233 16 HOH HOH X . I 4 HOH 34 234 18 HOH HOH X . I 4 HOH 35 235 19 HOH HOH X . I 4 HOH 36 236 20 HOH HOH X . I 4 HOH 37 237 22 HOH HOH X . I 4 HOH 38 238 24 HOH HOH X . I 4 HOH 39 239 25 HOH HOH X . I 4 HOH 40 240 26 HOH HOH X . I 4 HOH 41 241 29 HOH HOH X . I 4 HOH 42 242 30 HOH HOH X . I 4 HOH 43 243 31 HOH HOH X . I 4 HOH 44 244 32 HOH HOH X . I 4 HOH 45 245 35 HOH HOH X . I 4 HOH 46 246 36 HOH HOH X . I 4 HOH 47 247 39 HOH HOH X . I 4 HOH 48 248 40 HOH HOH X . I 4 HOH 49 249 41 HOH HOH X . I 4 HOH 50 250 42 HOH HOH X . I 4 HOH 51 251 43 HOH HOH X . I 4 HOH 52 252 44 HOH HOH X . I 4 HOH 53 253 45 HOH HOH X . I 4 HOH 54 254 46 HOH HOH X . I 4 HOH 55 255 47 HOH HOH X . I 4 HOH 56 256 48 HOH HOH X . I 4 HOH 57 257 49 HOH HOH X . I 4 HOH 58 258 50 HOH HOH X . I 4 HOH 59 259 51 HOH HOH X . I 4 HOH 60 260 52 HOH HOH X . I 4 HOH 61 261 53 HOH HOH X . I 4 HOH 62 262 54 HOH HOH X . I 4 HOH 63 263 56 HOH HOH X . I 4 HOH 64 264 58 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 223 ? 1_555 171.5 ? 2 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 237 ? 1_555 67.7 ? 3 O ? I HOH . ? X HOH 223 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 237 ? 1_555 106.1 ? 4 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 244 ? 1_555 47.0 ? 5 O ? I HOH . ? X HOH 223 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 244 ? 1_555 129.9 ? 6 O ? I HOH . ? X HOH 237 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 244 ? 1_555 92.7 ? 7 OP2 ? A A 11 ? X A 23 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 255 ? 1_555 98.7 ? 8 O ? I HOH . ? X HOH 223 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 255 ? 1_555 74.3 ? 9 O ? I HOH . ? X HOH 237 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 255 ? 1_555 83.7 ? 10 O ? I HOH . ? X HOH 244 ? 1_555 MG ? G MG . ? X MG 106 ? 1_555 O ? I HOH . ? X HOH 255 ? 1_555 61.8 ? 11 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 225 ? 1_555 86.1 ? 12 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 226 ? 1_555 88.0 ? 13 O ? I HOH . ? X HOH 225 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 226 ? 1_555 90.9 ? 14 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 227 ? 1_555 75.8 ? 15 O ? I HOH . ? X HOH 225 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 227 ? 1_555 82.8 ? 16 O ? I HOH . ? X HOH 226 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 227 ? 1_555 163.0 ? 17 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 228 ? 1_555 166.5 ? 18 O ? I HOH . ? X HOH 225 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 228 ? 1_555 81.3 ? 19 O ? I HOH . ? X HOH 226 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 228 ? 1_555 87.4 ? 20 O ? I HOH . ? X HOH 227 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 228 ? 1_555 107.1 ? 21 OP1 ? A A 12 ? X A 24 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 260 ? 1_555 111.7 ? 22 O ? I HOH . ? X HOH 225 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 260 ? 1_555 161.8 ? 23 O ? I HOH . ? X HOH 226 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 260 ? 1_555 86.0 ? 24 O ? I HOH . ? X HOH 227 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 260 ? 1_555 104.8 ? 25 O ? I HOH . ? X HOH 228 ? 1_555 MG ? D MG . ? X MG 103 ? 1_555 O ? I HOH . ? X HOH 260 ? 1_555 80.6 ? 26 O ? I HOH . ? X HOH 224 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? I HOH . ? X HOH 238 ? 1_555 83.5 ? 27 O ? I HOH . ? X HOH 224 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? I HOH . ? X HOH 243 ? 1_555 72.2 ? 28 O ? I HOH . ? X HOH 238 ? 1_555 MG ? C MG . ? X MG 102 ? 1_555 O ? I HOH . ? X HOH 243 ? 1_555 127.7 ? 29 O ? I HOH . ? X HOH 229 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? I HOH . ? X HOH 230 ? 1_555 59.2 ? 30 O ? I HOH . ? X HOH 229 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? I HOH . ? X HOH 231 ? 1_555 85.7 ? 31 O ? I HOH . ? X HOH 230 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? I HOH . ? X HOH 231 ? 1_555 84.1 ? 32 O ? I HOH . ? X HOH 229 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? I HOH . ? X HOH 257 ? 1_555 75.1 ? 33 O ? I HOH . ? X HOH 230 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? I HOH . ? X HOH 257 ? 1_555 71.7 ? 34 O ? I HOH . ? X HOH 231 ? 1_555 MG ? F MG . ? X MG 105 ? 1_555 O ? I HOH . ? X HOH 257 ? 1_555 154.5 ? 35 O ? I HOH . ? X HOH 207 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 208 ? 1_555 71.4 ? 36 O ? I HOH . ? X HOH 207 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 210 ? 1_555 152.3 ? 37 O ? I HOH . ? X HOH 208 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 210 ? 1_555 87.8 ? 38 O ? I HOH . ? X HOH 207 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 217 ? 4_455 77.7 ? 39 O ? I HOH . ? X HOH 208 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 217 ? 4_455 90.7 ? 40 O ? I HOH . ? X HOH 210 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 217 ? 4_455 84.7 ? 41 O ? I HOH . ? X HOH 207 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 218 ? 1_555 107.4 ? 42 O ? I HOH . ? X HOH 208 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 218 ? 1_555 99.2 ? 43 O ? I HOH . ? X HOH 210 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 218 ? 1_555 93.5 ? 44 O ? I HOH . ? X HOH 217 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 218 ? 1_555 169.9 ? 45 O ? I HOH . ? X HOH 207 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 219 ? 4_455 114.4 ? 46 O ? I HOH . ? X HOH 208 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 219 ? 4_455 169.1 ? 47 O ? I HOH . ? X HOH 210 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 219 ? 4_455 89.3 ? 48 O ? I HOH . ? X HOH 217 ? 4_455 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 219 ? 4_455 99.6 ? 49 O ? I HOH . ? X HOH 218 ? 1_555 MG ? H MG . ? X MG 107 ? 1_555 O ? I HOH . ? X HOH 219 ? 4_455 70.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-06 2 'Structure model' 1 1 2015-05-27 3 'Structure model' 1 2 2015-07-01 4 'Structure model' 1 3 2017-11-22 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_entity_src_syn 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' software 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_initial_refinement_model 9 5 'Structure model' pdbx_struct_conn_angle 10 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 3 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 10 5 'Structure model' '_pdbx_struct_conn_angle.value' 11 5 'Structure model' '_struct_conn.pdbx_dist_value' 12 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x+1/2,y+1/2,-z 4 -x,-y,z # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 5.9865 17.8451 3.8268 0.5254 0.5640 0.4009 0.1408 0.0115 -0.0056 4.3616 5.1293 7.7205 0.8122 -3.5014 4.2918 0.2302 0.8601 -1.1493 0.1815 -0.2949 -0.6012 0.3033 -1.2559 0.3813 'X-RAY DIFFRACTION' 2 ? refined 12.5462 3.4111 1.5239 0.7773 0.8794 1.3997 0.2398 -0.0223 0.0031 2.2512 2.4356 3.4037 -1.7743 -2.6709 1.7975 -0.0117 -0.7915 0.7813 0.6720 -1.6436 0.5481 -0.1690 0.0354 -0.2474 'X-RAY DIFFRACTION' 3 ? refined -10.7907 27.6976 -3.7608 0.4249 0.4805 0.4838 0.0753 -0.0472 -0.1015 3.0088 4.4695 1.8842 -1.1652 0.8481 -1.5915 0.2959 -0.2369 -0.0456 0.2432 -0.0670 0.6740 -0.4089 0.1418 -0.0285 'X-RAY DIFFRACTION' 4 ? refined -1.7512 32.2687 -1.3236 0.4878 0.5723 0.4751 0.0723 -0.0520 -0.1570 2.2483 3.3374 0.6378 -0.7038 -0.3631 -1.2714 0.1816 -0.3988 0.1101 0.2744 0.1511 0.0330 -0.0028 -0.2267 0.3113 'X-RAY DIFFRACTION' 5 ? refined -0.5692 19.5853 -1.3402 0.4822 0.4278 0.3555 0.1320 0.0366 -0.0458 5.7921 5.4702 4.3460 2.0742 1.9759 -0.1957 -0.3756 0.1763 0.1862 0.1550 -0.1294 0.3592 -0.3285 -0.5585 0.3196 'X-RAY DIFFRACTION' 6 ? refined -28.3708 25.3560 -7.1179 0.6318 0.7778 1.6608 0.1450 -0.1871 -0.0923 4.9756 1.8871 3.5082 0.1764 0.2874 1.5310 0.6955 -0.9003 0.3572 0.7668 -1.4764 2.3528 -0.3632 -0.0759 -0.7974 'X-RAY DIFFRACTION' 7 ? refined -14.3937 19.8704 -2.1986 0.5604 0.4770 0.7436 -0.0011 -0.0877 -0.0439 1.7882 3.9279 2.1015 -1.4175 0.2944 -0.5690 0.0312 -0.0598 -0.0369 -0.1116 -0.2337 0.9282 0.3634 -0.1882 -0.0712 'X-RAY DIFFRACTION' 8 ? refined 13.9975 5.5560 2.8704 0.5277 0.6963 1.0115 0.1253 0.0106 -0.0619 0.9842 4.4393 2.5102 -0.3245 0.7364 1.0145 -0.2438 0.5055 -0.3511 0.2574 -1.6555 -0.5792 0.2151 0.1144 -0.2037 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 101 X 101 '( CHAIN X AND RESID 101:101 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 X 13 X 20 '( CHAIN X AND RESID 13:20 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 X 21 X 38 '( CHAIN X AND RESID 21:38 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 X 39 X 46 '( CHAIN X AND RESID 39:46 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 X 47 X 59 '( CHAIN X AND RESID 47:59 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 X 60 X 64 '( CHAIN X AND RESID 60:64 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 X 65 X 72 '( CHAIN X AND RESID 65:72 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 X 73 X 83 '( CHAIN X AND RESID 73:83 )' ? ? ? ? ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: dev_1839)' 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 A _pdbx_validate_close_contact.auth_seq_id_1 23 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 244 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 MG MG MG N N 129 U OP3 O N N 130 U P P N N 131 U OP1 O N N 132 U OP2 O N N 133 U "O5'" O N N 134 U "C5'" C N N 135 U "C4'" C N R 136 U "O4'" O N N 137 U "C3'" C N S 138 U "O3'" O N N 139 U "C2'" C N R 140 U "O2'" O N N 141 U "C1'" C N R 142 U N1 N N N 143 U C2 C N N 144 U O2 O N N 145 U N3 N N N 146 U C4 C N N 147 U O4 O N N 148 U C5 C N N 149 U C6 C N N 150 U HOP3 H N N 151 U HOP2 H N N 152 U "H5'" H N N 153 U "H5''" H N N 154 U "H4'" H N N 155 U "H3'" H N N 156 U "HO3'" H N N 157 U "H2'" H N N 158 U "HO2'" H N N 159 U "H1'" H N N 160 U H3 H N N 161 U H5 H N N 162 U H6 H N N 163 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 U OP3 P sing N N 134 U OP3 HOP3 sing N N 135 U P OP1 doub N N 136 U P OP2 sing N N 137 U P "O5'" sing N N 138 U OP2 HOP2 sing N N 139 U "O5'" "C5'" sing N N 140 U "C5'" "C4'" sing N N 141 U "C5'" "H5'" sing N N 142 U "C5'" "H5''" sing N N 143 U "C4'" "O4'" sing N N 144 U "C4'" "C3'" sing N N 145 U "C4'" "H4'" sing N N 146 U "O4'" "C1'" sing N N 147 U "C3'" "O3'" sing N N 148 U "C3'" "C2'" sing N N 149 U "C3'" "H3'" sing N N 150 U "O3'" "HO3'" sing N N 151 U "C2'" "O2'" sing N N 152 U "C2'" "C1'" sing N N 153 U "C2'" "H2'" sing N N 154 U "O2'" "HO2'" sing N N 155 U "C1'" N1 sing N N 156 U "C1'" "H1'" sing N N 157 U N1 C2 sing N N 158 U N1 C6 sing N N 159 U C2 O2 doub N N 160 U C2 N3 sing N N 161 U N3 C4 sing N N 162 U N3 H3 sing N N 163 U C4 O4 doub N N 164 U C4 C5 sing N N 165 U C5 C6 doub N N 166 U C5 H5 sing N N 167 U C6 H6 sing N N 168 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4XNR 'double helix' 4XNR 'a-form double helix' 4XNR 'hairpin loop' 4XNR 'mismatched base pair' 4XNR 'internal loop' 4XNR 'triple helix' 4XNR 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 0.165 0.056 0.128 -0.574 -12.002 -0.622 1 X_G13:C83_X X 13 ? X 83 ? 19 1 1 A G 2 1_555 A C 70 1_555 0.039 -0.120 -0.307 -7.534 -12.536 0.020 2 X_G14:C82_X X 14 ? X 82 ? 19 1 1 A G 3 1_555 A C 69 1_555 -0.102 0.048 -0.160 -9.393 -8.621 6.868 3 X_G15:C81_X X 15 ? X 81 ? 19 1 1 A A 4 1_555 A U 68 1_555 0.571 0.238 -0.266 -8.903 -7.968 6.069 4 X_A16:U80_X X 16 ? X 80 ? 20 1 1 A A 5 1_555 A U 67 1_555 0.673 0.135 -0.403 -8.297 -6.171 0.372 5 X_A17:U79_X X 17 ? X 79 ? 20 1 1 A G 6 1_555 A C 66 1_555 -0.074 0.319 -0.125 -6.528 -6.739 10.599 6 X_G18:C78_X X 18 ? X 78 ? ? 1 1 A A 7 1_555 A U 65 1_555 0.103 0.136 0.019 -1.666 -12.168 6.141 7 X_A19:U77_X X 19 ? X 77 ? 20 1 1 A U 8 1_555 A A 64 1_555 0.518 -0.067 0.243 -9.744 -15.115 9.329 8 X_U20:A76_X X 20 ? X 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 0.550 -0.017 0.135 -1.784 -6.625 5.726 9 X_A21:U75_X X 21 ? X 75 ? 20 1 1 A U 39 1_555 A U 35 1_555 -3.474 -0.495 0.821 -34.604 36.970 -69.840 10 X_U51:U47_X X 51 ? X 47 ? ? ? 1 A A 40 1_555 A U 10 1_555 0.012 -0.080 -0.470 -18.702 -4.667 -0.150 11 X_A52:U22_X X 52 ? X 22 ? 20 1 1 A C 41 1_555 A G 34 1_555 0.208 -0.235 -0.108 15.126 2.845 -3.029 12 X_C53:G46_X X 53 ? X 46 ? 19 1 1 A U 13 1_555 A A 33 1_555 -0.047 -0.074 0.160 10.331 -8.183 -1.932 13 X_U25:A45_X X 25 ? X 45 ? 20 1 1 A C 14 1_555 A G 32 1_555 0.187 0.111 -0.232 6.372 -8.074 4.618 14 X_C26:G44_X X 26 ? X 44 ? 19 1 1 A C 15 1_555 A G 31 1_555 0.095 0.119 -0.174 1.506 -3.397 3.462 15 X_C27:G43_X X 27 ? X 43 ? 19 1 1 A U 16 1_555 A G 30 1_555 2.111 -0.450 -0.199 3.097 -9.343 2.256 16 X_U28:G42_X X 28 ? X 42 ? 28 1 1 A A 17 1_555 A U 29 1_555 -0.421 -0.191 0.189 0.166 -10.278 3.310 17 X_A29:U41_X X 29 ? X 41 ? 20 1 1 A A 18 1_555 A U 28 1_555 -0.025 -0.073 0.329 15.273 -16.783 5.506 18 X_A30:U40_X X 30 ? X 40 ? 20 1 1 A U 19 1_555 A U 27 1_555 2.513 -1.824 0.272 2.325 -23.977 18.097 19 X_U31:U39_X X 31 ? X 39 ? 16 1 1 A C 48 1_555 A G 26 1_555 -0.598 0.032 0.572 -19.738 -15.475 -5.891 20 X_C60:G38_X X 60 ? X 38 ? 19 1 1 A A 21 1_555 A A 54 1_555 4.335 1.465 -0.153 -4.976 3.578 -112.718 21 X_A33:A66_X X 33 ? X 66 ? 5 4 1 A U 22 1_555 A A 53 1_555 3.920 -1.771 -1.086 2.702 -7.334 -103.118 22 X_U34:A65_X X 34 ? X 65 ? 24 4 1 A G 25 1_555 A C 49 1_555 0.132 0.152 0.994 7.679 -11.162 -3.486 23 X_G37:C61_X X 37 ? X 61 ? 19 1 1 A C 42 1_555 A G 60 1_555 0.398 0.123 -0.170 -7.690 -8.210 2.934 24 X_C54:G72_X X 54 ? X 72 ? 19 1 1 A A 43 1_555 A U 59 1_555 0.043 -0.058 0.070 -8.924 -10.663 0.658 25 X_A55:U71_X X 55 ? X 71 ? 20 1 1 A A 44 1_555 A U 58 1_555 0.328 -0.013 0.239 -0.120 -14.676 -3.294 26 X_A56:U70_X X 56 ? X 70 ? 20 1 1 A G 45 1_555 A C 57 1_555 -0.071 0.118 -0.010 -4.982 -12.590 0.336 27 X_G57:C69_X X 57 ? X 69 ? 19 1 1 A A 46 1_555 A U 56 1_555 0.495 -0.029 0.295 3.474 -10.102 1.263 28 X_A58:U68_X X 58 ? X 68 ? 20 1 1 A G 47 1_555 A C 55 1_555 -0.395 -0.154 -0.082 -15.199 -24.138 1.634 29 X_G59:C67_X X 59 ? X 67 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 -0.192 -1.445 3.328 0.584 10.500 35.025 -3.692 0.383 2.790 16.980 -0.944 36.522 1 XX_G13G14:C82C83_XX X 13 ? X 83 ? X 14 ? X 82 ? 1 A G 2 1_555 A C 70 1_555 A G 3 1_555 A C 69 1_555 0.504 -1.553 3.221 -1.082 7.974 31.987 -3.994 -1.058 2.747 14.192 1.925 32.958 2 XX_G14G15:C81C82_XX X 14 ? X 82 ? X 15 ? X 81 ? 1 A G 3 1_555 A C 69 1_555 A A 4 1_555 A U 68 1_555 0.047 -1.431 3.131 1.726 9.727 33.963 -3.652 0.152 2.633 16.231 -2.881 35.330 3 XX_G15A16:U80C81_XX X 15 ? X 81 ? X 16 ? X 80 ? 1 A A 4 1_555 A U 68 1_555 A A 5 1_555 A U 67 1_555 -0.388 -1.440 3.253 0.762 7.526 30.647 -3.968 0.847 2.818 13.973 -1.415 31.545 4 XX_A16A17:U79U80_XX X 16 ? X 80 ? X 17 ? X 79 ? 1 A A 5 1_555 A U 67 1_555 A G 6 1_555 A C 66 1_555 0.784 -1.729 3.135 -0.319 6.415 26.749 -5.050 -1.721 2.646 13.618 0.677 27.495 5 XX_A17G18:C78U79_XX X 17 ? X 79 ? X 18 ? X 78 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 -0.490 -1.403 3.059 -1.042 4.616 30.883 -3.400 0.732 2.839 8.604 1.942 31.235 6 XX_G18A19:U77C78_XX X 18 ? X 78 ? X 19 ? X 77 ? 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 0.275 -1.354 3.438 0.938 14.774 33.259 -4.178 -0.314 2.628 24.367 -1.547 36.320 7 XX_A19U20:A76U77_XX X 19 ? X 77 ? X 20 ? X 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.364 -1.411 2.830 4.075 19.065 30.187 -4.370 -0.148 1.704 32.676 -6.984 35.812 8 XX_U20A21:U75A76_XX X 20 ? X 76 ? X 21 ? X 75 ? 1 A A 9 1_555 A U 63 1_555 A U 39 1_555 A U 35 1_555 -1.809 6.436 1.861 18.542 3.599 157.332 3.274 0.952 1.842 1.834 -9.452 157.644 9 XX_A21U51:U47U75_XX X 21 ? X 75 ? X 51 ? X 47 ? 1 A U 39 1_555 A U 35 1_555 A A 40 1_555 A U 10 1_555 -0.043 -0.821 3.465 -1.118 27.954 3.251 -7.269 -0.134 -0.409 83.437 3.338 28.161 10 XX_U51A52:U22U47_XX X 51 ? X 47 ? X 52 ? X 22 ? 1 A A 40 1_555 A U 10 1_555 A C 41 1_555 A G 34 1_555 2.007 -0.161 2.568 -2.283 7.578 43.024 -0.772 -2.863 2.403 10.229 3.082 43.712 11 XX_A52C53:G46U22_XX X 52 ? X 22 ? X 53 ? X 46 ? 1 A C 41 1_555 A G 34 1_555 A U 13 1_555 A A 33 1_555 -2.558 -0.589 3.303 -12.723 1.373 50.813 -0.768 1.978 3.783 1.571 14.564 52.295 12 XX_C53U25:A45G46_XX X 53 ? X 46 ? X 25 ? X 45 ? 1 A U 13 1_555 A A 33 1_555 A C 14 1_555 A G 32 1_555 0.508 -1.718 3.315 3.594 1.746 33.705 -3.225 -0.289 3.260 2.998 -6.172 33.934 13 XX_U25C26:G44A45_XX X 25 ? X 45 ? X 26 ? X 44 ? 1 A C 14 1_555 A G 32 1_555 A C 15 1_555 A G 31 1_555 -0.397 -1.917 3.529 -1.602 2.966 28.659 -4.543 0.421 3.335 5.965 3.222 28.852 14 XX_C26C27:G43G44_XX X 26 ? X 44 ? X 27 ? X 43 ? 1 A C 15 1_555 A G 31 1_555 A U 16 1_555 A G 30 1_555 -0.111 -1.346 3.242 2.525 5.996 37.054 -2.836 0.487 2.983 9.346 -3.935 37.601 15 XX_C27U28:G42G43_XX X 27 ? X 43 ? X 28 ? X 42 ? 1 A U 16 1_555 A G 30 1_555 A A 17 1_555 A U 29 1_555 0.034 -1.703 3.163 1.021 10.157 24.802 -5.958 0.156 2.298 22.469 -2.259 26.790 16 XX_U28A29:U41G42_XX X 28 ? X 42 ? X 29 ? X 41 ? 1 A A 17 1_555 A U 29 1_555 A A 18 1_555 A U 28 1_555 0.392 -2.188 2.926 -3.128 5.379 21.314 -7.323 -1.971 2.233 14.160 8.233 22.194 17 XX_A29A30:U40U41_XX X 29 ? X 41 ? X 30 ? X 40 ? 1 A A 18 1_555 A U 28 1_555 A U 19 1_555 A U 27 1_555 0.637 -1.180 3.656 0.128 5.022 46.526 -1.945 -0.791 3.519 6.336 -0.161 46.781 18 XX_A30U31:U39U40_XX X 30 ? X 40 ? X 31 ? X 39 ? 1 A C 48 1_555 A G 26 1_555 A A 21 1_555 A A 54 1_555 0.765 -6.226 0.944 -3.103 -17.152 -119.743 3.619 0.434 0.416 9.890 -1.789 -120.510 19 XX_C60A33:A66G38_XX X 60 ? X 38 ? X 33 ? X 66 ? 1 A A 21 1_555 A A 54 1_555 A U 22 1_555 A A 53 1_555 -0.131 -1.230 3.159 8.350 -1.502 35.056 -1.781 1.362 3.096 -2.449 -13.617 36.037 20 XX_A33U34:A65A66_XX X 33 ? X 66 ? X 34 ? X 65 ? 1 A C 42 1_555 A G 60 1_555 A A 43 1_555 A U 59 1_555 -0.170 -1.403 3.328 -2.183 8.376 30.279 -4.096 -0.079 2.853 15.637 4.075 31.464 21 XX_C54A55:U71G72_XX X 54 ? X 72 ? X 55 ? X 71 ? 1 A A 43 1_555 A U 59 1_555 A A 44 1_555 A U 58 1_555 -0.297 -1.084 2.961 0.023 4.462 34.311 -2.432 0.502 2.802 7.525 -0.039 34.592 22 XX_A55A56:U70U71_XX X 55 ? X 71 ? X 56 ? X 70 ? 1 A A 44 1_555 A U 58 1_555 A G 45 1_555 A C 57 1_555 0.499 -1.512 3.337 3.086 6.508 30.618 -3.987 -0.353 2.995 12.115 -5.745 31.434 23 XX_A56G57:C69U70_XX X 56 ? X 70 ? X 57 ? X 69 ? 1 A G 45 1_555 A C 57 1_555 A A 46 1_555 A U 56 1_555 0.214 -1.448 3.000 -1.746 -1.763 32.291 -2.308 -0.669 3.057 -3.164 3.133 32.384 24 XX_G57A58:U68C69_XX X 57 ? X 69 ? X 58 ? X 68 ? 1 A A 46 1_555 A U 56 1_555 A G 47 1_555 A C 55 1_555 0.242 -1.710 3.689 4.029 5.475 31.768 -4.104 0.337 3.360 9.861 -7.257 32.469 25 XX_A58G59:C67U68_XX X 58 ? X 68 ? X 59 ? X 67 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4TZX _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 21 21 2' _space_group.name_Hall 'P 2 2ab' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 #