HEADER TRANSPORT PROTEIN/INHIBITOR 16-JAN-15 4XNV TITLE THE HUMAN P2Y1 RECEPTOR IN COMPLEX WITH BPTU COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2Y PURINOCEPTOR 1, RUBREDOXIN, P2Y PURINOCEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P2Y1, ATP RECEPTOR, PURINERGIC RECEPTOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHIMERA PROTEIN OF P2Y PURINOCEPTOR 1 (P2RY1_HUMA) COMPND 8 WITH RUBREDOXIN (RUBR_CLOPA) INSERTED INTO ICL3 DOMAIN BETWEEN COMPND 9 RESIDUES 247LYS AND 253PRO, AND REPLACED RESIDUES 248ASN TO 252SER. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1501; SOURCE 5 GENE: P2RY1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HUMAN P2Y1 RECEPTOR, G PROTEIN COUPLED RECEPTOR, PLATELET ACTIVATION, KEYWDS 2 MEMBRANE PROTEIN, INHIBITOR COMPLEX, TRANSPORT PROTEIN-INHIBITOR KEYWDS 3 COMPLEX, PSI-BIOLOGY, STRUCTURAL GENOMICS, GPCR NETWORK, GPCR EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHANG,Z.GAO,K.JACOBSON,G.W.HAN,R.STEVENS,Q.ZHAO,B.WU,GPCR NETWORK AUTHOR 2 (GPCR) REVDAT 5 30-OCT-24 4XNV 1 REMARK REVDAT 4 05-FEB-20 4XNV 1 SOURCE KEYWDS AUTHOR JRNL REVDAT 4 2 1 REMARK REVDAT 3 29-APR-15 4XNV 1 KEYWDS REVDAT 2 22-APR-15 4XNV 1 JRNL REVDAT 1 01-APR-15 4XNV 0 JRNL AUTH D.ZHANG,Z.G.GAO,K.ZHANG,E.KISELEV,S.CRANE,J.WANG,S.PAOLETTA, JRNL AUTH 2 C.YI,L.MA,W.ZHANG,G.W.HAN,H.LIU,V.CHEREZOV,V.KATRITCH, JRNL AUTH 3 H.JIANG,R.C.STEVENS,K.A.JACOBSON,Q.ZHAO,B.WU JRNL TITL TWO DISPARATE LIGAND-BINDING SITES IN THE HUMAN P2Y1 JRNL TITL 2 RECEPTOR JRNL REF NATURE V. 520 317 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 25822790 JRNL DOI 10.1038/NATURE14287 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2887 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3667 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2754 REMARK 3 BIN R VALUE (WORKING SET) : 0.3661 REMARK 3 BIN FREE R VALUE : 0.3786 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 371 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.52040 REMARK 3 B22 (A**2) : -2.52040 REMARK 3 B33 (A**2) : 5.04090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.369 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.265 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.293 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.200 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3164 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4262 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1126 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 38 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 440 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3164 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 406 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3716 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.19 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.56 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|39 - A|334 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.1074 17.9445 9.7233 REMARK 3 T TENSOR REMARK 3 T11: -0.1738 T22: -0.1537 REMARK 3 T33: -0.0538 T12: 0.0229 REMARK 3 T13: 0.0008 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 1.7026 L22: 2.2469 REMARK 3 L33: 1.0152 L12: 0.0833 REMARK 3 L13: 0.3764 L23: 0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.2893 S13: 0.2711 REMARK 3 S21: 0.2173 S22: 0.0210 S23: 0.2022 REMARK 3 S31: -0.0437 S32: -0.0951 S33: -0.0244 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19881 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000MME SODIUM CITRATE, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.13500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.13050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 33.13500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.13050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 33.13500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.13050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.26100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 159.38000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.26100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 159.38000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.26100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 159.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 TRP A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 TRP A 25 REMARK 465 GLY A 26 REMARK 465 ASN A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 VAL A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 LEU A 157 REMARK 465 PRO A 1034 REMARK 465 ASP A 1035 REMARK 465 ASP A 1036 REMARK 465 TRP A 1037 REMARK 465 LEU A 335 REMARK 465 SER A 336 REMARK 465 ARG A 337 REMARK 465 ALA A 338 REMARK 465 THR A 339 REMARK 465 ARG A 340 REMARK 465 LYS A 341 REMARK 465 ALA A 342 REMARK 465 SER A 343 REMARK 465 ARG A 344 REMARK 465 ARG A 345 REMARK 465 SER A 346 REMARK 465 GLU A 347 REMARK 465 ALA A 348 REMARK 465 ASN A 349 REMARK 465 LEU A 350 REMARK 465 GLN A 351 REMARK 465 SER A 352 REMARK 465 LYS A 353 REMARK 465 SER A 354 REMARK 465 GLU A 355 REMARK 465 ASP A 356 REMARK 465 MET A 357 REMARK 465 THR A 358 REMARK 465 LEU A 359 REMARK 465 ASN A 360 REMARK 465 ILE A 361 REMARK 465 LEU A 362 REMARK 465 PRO A 363 REMARK 465 GLU A 364 REMARK 465 PHE A 365 REMARK 465 LYS A 366 REMARK 465 GLN A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 ASP A 370 REMARK 465 THR A 371 REMARK 465 SER A 372 REMARK 465 LEU A 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 45 OG1 CG2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 THR A 330 OG1 CG2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 81.26 -67.33 REMARK 500 TYR A 155 68.17 -114.33 REMARK 500 LEU A 160 43.60 -100.99 REMARK 500 THR A 205 -95.87 -106.43 REMARK 500 PHE A 226 -62.25 -125.78 REMARK 500 LEU A1041 -75.93 -77.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1106 REMARK 610 OLC A 1107 REMARK 610 OLC A 1112 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1115 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1006 SG REMARK 620 2 CYS A1009 SG 104.5 REMARK 620 3 CYS A1039 SG 109.8 113.7 REMARK 620 4 CYS A1042 SG 98.5 119.5 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BUR A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y01 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y01 A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y01 A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1115 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XNW RELATED DB: PDB REMARK 900 RELATED ID: GPCR-86 RELATED DB: TARGETTRACK DBREF 4XNV A 2 247 UNP P47900 P2RY1_HUMAN 2 247 DBREF 4XNV A 1001 1054 UNP P00268 RUBR_CLOPA 1 54 DBREF 4XNV A 253 373 UNP P47900 P2RY1_HUMAN 253 373 SEQADV 4XNV ASN A 320 UNP P47900 ASP 320 ENGINEERED MUTATION SEQRES 1 A 421 THR GLU VAL LEU TRP PRO ALA VAL PRO ASN GLY THR ASP SEQRES 2 A 421 ALA ALA PHE LEU ALA GLY PRO GLY SER SER TRP GLY ASN SEQRES 3 A 421 SER THR VAL ALA SER THR ALA ALA VAL SER SER SER PHE SEQRES 4 A 421 LYS CYS ALA LEU THR LYS THR GLY PHE GLN PHE TYR TYR SEQRES 5 A 421 LEU PRO ALA VAL TYR ILE LEU VAL PHE ILE ILE GLY PHE SEQRES 6 A 421 LEU GLY ASN SER VAL ALA ILE TRP MET PHE VAL PHE HIS SEQRES 7 A 421 MET LYS PRO TRP SER GLY ILE SER VAL TYR MET PHE ASN SEQRES 8 A 421 LEU ALA LEU ALA ASP PHE LEU TYR VAL LEU THR LEU PRO SEQRES 9 A 421 ALA LEU ILE PHE TYR TYR PHE ASN LYS THR ASP TRP ILE SEQRES 10 A 421 PHE GLY ASP ALA MET CYS LYS LEU GLN ARG PHE ILE PHE SEQRES 11 A 421 HIS VAL ASN LEU TYR GLY SER ILE LEU PHE LEU THR CYS SEQRES 12 A 421 ILE SER ALA HIS ARG TYR SER GLY VAL VAL TYR PRO LEU SEQRES 13 A 421 LYS SER LEU GLY ARG LEU LYS LYS LYS ASN ALA ILE CYS SEQRES 14 A 421 ILE SER VAL LEU VAL TRP LEU ILE VAL VAL VAL ALA ILE SEQRES 15 A 421 SER PRO ILE LEU PHE TYR SER GLY THR GLY VAL ARG LYS SEQRES 16 A 421 ASN LYS THR ILE THR CYS TYR ASP THR THR SER ASP GLU SEQRES 17 A 421 TYR LEU ARG SER TYR PHE ILE TYR SER MET CYS THR THR SEQRES 18 A 421 VAL ALA MET PHE CYS VAL PRO LEU VAL LEU ILE LEU GLY SEQRES 19 A 421 CYS TYR GLY LEU ILE VAL ARG ALA LEU ILE TYR LYS MET SEQRES 20 A 421 LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR ASN SEQRES 21 A 421 PRO GLU ASP GLY ASP PRO ASP ASN GLY VAL ASN PRO GLY SEQRES 22 A 421 THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS PRO SEQRES 23 A 421 LEU CYS GLY VAL GLY LYS ASP GLN PHE GLU GLU VAL GLU SEQRES 24 A 421 GLU PRO LEU ARG ARG LYS SER ILE TYR LEU VAL ILE ILE SEQRES 25 A 421 VAL LEU THR VAL PHE ALA VAL SER TYR ILE PRO PHE HIS SEQRES 26 A 421 VAL MET LYS THR MET ASN LEU ARG ALA ARG LEU ASP PHE SEQRES 27 A 421 GLN THR PRO ALA MET CYS ALA PHE ASN ASP ARG VAL TYR SEQRES 28 A 421 ALA THR TYR GLN VAL THR ARG GLY LEU ALA SER LEU ASN SEQRES 29 A 421 SER CYS VAL ASN PRO ILE LEU TYR PHE LEU ALA GLY ASP SEQRES 30 A 421 THR PHE ARG ARG ARG LEU SER ARG ALA THR ARG LYS ALA SEQRES 31 A 421 SER ARG ARG SER GLU ALA ASN LEU GLN SER LYS SER GLU SEQRES 32 A 421 ASP MET THR LEU ASN ILE LEU PRO GLU PHE LYS GLN ASN SEQRES 33 A 421 GLY ASP THR SER LEU HET BUR A1101 32 HET CLR A1102 28 HET Y01 A1103 35 HET Y01 A1104 35 HET Y01 A1105 35 HET OLC A1106 21 HET OLC A1107 21 HET OLC A1108 25 HET OLC A1109 25 HET OLC A1110 25 HET OLC A1111 25 HET OLC A1112 22 HET OLC A1113 25 HET 1PE A1114 16 HET ZN A1115 1 HETNAM BUR 1-[2-(2-TERT-BUTYLPHENOXY)PYRIDIN-3-YL]-3-[4- HETNAM 2 BUR (TRIFLUOROMETHOXY)PHENYL]UREA HETNAM CLR CHOLESTEROL HETNAM Y01 CHOLESTEROL HEMISUCCINATE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM ZN ZINC ION HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN 1PE PEG400 FORMUL 2 BUR C23 H22 F3 N3 O3 FORMUL 3 CLR C27 H46 O FORMUL 4 Y01 3(C31 H50 O4) FORMUL 7 OLC 8(C21 H40 O4) FORMUL 15 1PE C10 H22 O6 FORMUL 16 ZN ZN 2+ FORMUL 17 HOH *30(H2 O) HELIX 1 AA1 PHE A 49 HIS A 79 1 31 HELIX 2 AA2 SER A 84 ASN A 113 1 30 HELIX 3 AA3 GLY A 120 TYR A 155 1 36 HELIX 4 AA4 LEU A 160 SER A 184 1 25 HELIX 5 AA5 PRO A 185 SER A 190 1 6 HELIX 6 AA6 TYR A 210 PHE A 226 1 17 HELIX 7 AA7 PHE A 226 TYR A 246 1 21 HELIX 8 AA8 ASP A 1029 ILE A 1033 5 5 HELIX 9 AA9 GLY A 1045 ASP A 1047 5 3 HELIX 10 AB1 GLU A 1054 SER A 272 1 21 HELIX 11 AB2 SER A 272 PHE A 290 1 19 HELIX 12 AB3 THR A 292 ALA A 294 5 3 HELIX 13 AB4 MET A 295 ASN A 320 1 26 HELIX 14 AB5 ASN A 320 ALA A 327 1 8 SHEET 1 AA1 2 GLY A 191 VAL A 194 0 SHEET 2 AA1 2 ILE A 200 TYR A 203 -1 O TYR A 203 N GLY A 191 SHEET 1 AA2 3 ILE A1012 TYR A1013 0 SHEET 2 AA2 3 TYR A1004 CYS A1006 -1 N TYR A1004 O TYR A1013 SHEET 3 AA2 3 PHE A1049 GLU A1051 -1 O GLU A1050 N THR A1005 SSBOND 1 CYS A 42 CYS A 296 1555 1555 2.04 SSBOND 2 CYS A 124 CYS A 202 1555 1555 2.03 LINK SG CYS A1006 ZN ZN A1115 1555 1555 2.88 LINK SG CYS A1009 ZN ZN A1115 1555 1555 2.18 LINK SG CYS A1039 ZN ZN A1115 1555 1555 2.60 LINK SG CYS A1042 ZN ZN A1115 1555 1555 2.35 CISPEP 1 LYS A 81 PRO A 82 0 -1.35 SITE 1 AC1 13 PHE A 62 PHE A 66 LEU A 102 THR A 103 SITE 2 AC1 13 PRO A 105 ALA A 106 MET A 123 GLN A 127 SITE 3 AC1 13 Y01 A1105 OLC A1107 OLC A1110 OLC A1113 SITE 4 AC1 13 1PE A1114 SITE 1 AC2 5 PRO A 185 TYR A 189 SER A 213 TYR A 217 SITE 2 AC2 5 Y01 A1103 SITE 1 AC3 8 ILE A 216 CYS A 220 ALA A 270 MET A 279 SITE 2 AC3 8 ARG A 301 THR A 305 CLR A1102 1PE A1114 SITE 1 AC4 7 TYR A 89 CYS A 144 HIS A 148 ALA A 224 SITE 2 AC4 7 LEU A 232 TYR A 246 LEU A 266 SITE 1 AC5 9 PHE A 62 ILE A 108 PHE A 109 PHE A 112 SITE 2 AC5 9 ASN A 113 ARG A 301 BUR A1101 OLC A1113 SITE 3 AC5 9 1PE A1114 SITE 1 AC6 5 ARG A 212 PHE A 215 ILE A 216 ASP A 289 SITE 2 AC6 5 OLC A1112 SITE 1 AC7 9 PHE A 109 SER A 184 PHE A 188 TYR A 189 SITE 2 AC7 9 TYR A 210 SER A 213 ARG A 301 BUR A1101 SITE 3 AC7 9 1PE A1114 SITE 1 AC8 4 ASP A 121 PHE A 129 OLC A1110 HOH A1206 SITE 1 AC9 6 LYS A 46 PHE A 49 TYR A 53 PHE A 112 SITE 2 AC9 6 CYS A 318 OLC A1111 SITE 1 AD1 10 ILE A 118 PHE A 119 ASP A 121 MET A 123 SITE 2 AD1 10 LYS A 125 SER A 184 LEU A 187 PHE A 188 SITE 3 AD1 10 BUR A1101 OLC A1108 SITE 1 AD2 6 PHE A 51 TYR A 52 PRO A 55 TYR A 111 SITE 2 AD2 6 PHE A 112 OLC A1109 SITE 1 AD3 5 PHE A 226 THR A 281 MET A 282 ARG A 285 SITE 2 AD3 5 OLC A1106 SITE 1 AD4 9 THR A 267 ALA A 270 ARG A 301 THR A 305 SITE 2 AD4 9 VAL A 308 BUR A1101 Y01 A1105 1PE A1114 SITE 3 AD4 9 HOH A1217 SITE 1 AD5 6 ARG A 301 BUR A1101 Y01 A1103 Y01 A1105 SITE 2 AD5 6 OLC A1107 OLC A1113 SITE 1 AD6 4 CYS A1006 CYS A1009 CYS A1039 CYS A1042 CRYST1 66.270 66.270 239.070 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015090 0.008712 0.000000 0.00000 SCALE2 0.000000 0.017424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004183 0.00000