HEADER TRANSFERASE 16-JAN-15 4XP3 TITLE CRYSTAL STRUCTURE OF ERK2 IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 8-358; COMPND 5 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, COMPND 6 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, COMPND 7 MAPK 2; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MAPK1, ERK2, MAPK, PRKM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,F.ALLEMAND,G.LABESSE,J.F.GUICHOU REVDAT 4 10-JAN-24 4XP3 1 REMARK REVDAT 3 06-SEP-17 4XP3 1 REMARK SITE ATOM REVDAT 2 19-AUG-15 4XP3 1 JRNL REVDAT 1 12-AUG-15 4XP3 0 JRNL AUTH M.GELIN,V.DELFOSSE,F.ALLEMAND,F.HOH,Y.SALLAZ-DAMAZ, JRNL AUTH 2 M.PIROCCHI,W.BOURGUET,J.L.FERRER,G.LABESSE,J.F.GUICHOU JRNL TITL COMBINING `DRY' CO-CRYSTALLIZATION AND IN SITU DIFFRACTION JRNL TITL 2 TO FACILITATE LIGAND SCREENING BY X-RAY CRYSTALLOGRAPHY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1777 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26249358 JRNL DOI 10.1107/S1399004715010342 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.280 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.9 REMARK 3 NUMBER OF REFLECTIONS : 55296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.2000 - 4.8223 0.86 2906 148 0.1708 0.1800 REMARK 3 2 4.8223 - 3.8332 0.87 2915 163 0.1238 0.1459 REMARK 3 3 3.8332 - 3.3503 0.86 2916 134 0.1287 0.1437 REMARK 3 4 3.3503 - 3.0447 0.85 2820 149 0.1405 0.1578 REMARK 3 5 3.0447 - 2.8269 0.84 2853 142 0.1470 0.1829 REMARK 3 6 2.8269 - 2.6605 0.83 2787 166 0.1516 0.1990 REMARK 3 7 2.6605 - 2.5274 0.82 2718 175 0.1450 0.1806 REMARK 3 8 2.5274 - 2.4175 0.81 2681 166 0.1435 0.1843 REMARK 3 9 2.4175 - 2.3245 0.80 2732 154 0.1471 0.1884 REMARK 3 10 2.3245 - 2.2444 0.80 2670 150 0.1457 0.1940 REMARK 3 11 2.2444 - 2.1742 0.79 2670 152 0.1507 0.1987 REMARK 3 12 2.1742 - 2.1121 0.78 2580 177 0.1569 0.1808 REMARK 3 13 2.1121 - 2.0566 0.78 2592 165 0.1597 0.1913 REMARK 3 14 2.0566 - 2.0064 0.78 2650 105 0.1553 0.1752 REMARK 3 15 2.0064 - 1.9608 0.76 2595 112 0.1591 0.1999 REMARK 3 16 1.9608 - 1.9191 0.76 2512 143 0.1625 0.2577 REMARK 3 17 1.9191 - 1.8808 0.75 2547 108 0.1717 0.1886 REMARK 3 18 1.8808 - 1.8453 0.71 2419 118 0.1887 0.2644 REMARK 3 19 1.8453 - 1.8123 0.67 2284 98 0.1964 0.2205 REMARK 3 20 1.8123 - 1.7816 0.48 1649 75 0.2220 0.2637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3041 REMARK 3 ANGLE : 1.021 4116 REMARK 3 CHIRALITY : 0.043 441 REMARK 3 PLANARITY : 0.005 523 REMARK 3 DIHEDRAL : 13.273 1188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 9:118) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8823 12.5481 34.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.2186 REMARK 3 T33: 0.1672 T12: 0.0072 REMARK 3 T13: -0.0176 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 0.2661 L22: 0.4480 REMARK 3 L33: 1.9889 L12: 0.1481 REMARK 3 L13: -0.2688 L23: 0.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.1319 S13: 0.1581 REMARK 3 S21: -0.1752 S22: 0.1315 S23: 0.1313 REMARK 3 S31: -0.3206 S32: -0.3812 S33: -0.0995 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 119:312) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9305 7.8341 57.2330 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.0570 REMARK 3 T33: 0.1014 T12: 0.0091 REMARK 3 T13: 0.0102 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.2638 L22: 0.6266 REMARK 3 L33: 0.9856 L12: 0.6351 REMARK 3 L13: 0.6321 L23: 0.2379 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0053 S13: 0.0621 REMARK 3 S21: 0.0111 S22: 0.0044 S23: -0.0085 REMARK 3 S31: -0.0403 S32: 0.0339 S33: -0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 313:354) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2932 -0.7527 35.2749 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.1662 REMARK 3 T33: 0.1711 T12: -0.0269 REMARK 3 T13: 0.0101 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.3726 L22: 1.6091 REMARK 3 L33: 2.9805 L12: 0.2405 REMARK 3 L13: -0.3157 L23: -1.6813 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: 0.0769 S13: -0.0000 REMARK 3 S21: -0.3064 S22: 0.0401 S23: -0.0261 REMARK 3 S31: 0.2490 S32: 0.2559 S33: -0.0782 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN S REMARK 3 ORIGIN FOR THE GROUP (A): -3.5610 6.9561 49.7472 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1155 REMARK 3 T33: 0.1408 T12: 0.0094 REMARK 3 T13: 0.0140 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.6867 L22: 0.7833 REMARK 3 L33: 0.7477 L12: 0.2663 REMARK 3 L13: 0.1758 L23: -0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.0001 S13: 0.0214 REMARK 3 S21: -0.0283 S22: 0.0405 S23: 0.0092 REMARK 3 S31: -0.0246 S32: -0.0156 S33: -0.0265 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -16.6100 12.8294 41.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.2964 T22: 0.3467 REMARK 3 T33: 0.2827 T12: -0.0774 REMARK 3 T13: -0.0659 T23: 0.1601 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 4.3897 REMARK 3 L33: 4.1977 L12: -0.7070 REMARK 3 L13: -2.5049 L23: 0.8660 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: -0.1685 S13: 0.2631 REMARK 3 S21: -0.0014 S22: 0.0416 S23: -0.0673 REMARK 3 S31: -0.1633 S32: 0.0941 S33: -0.0859 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 56.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3QYW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG MME 2000, 0.1M MES PH 6.5, REMARK 280 0.1M AMMONIUM SULFATE, 0.02M BETA-MERCAPTOETHANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.84150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 330 REMARK 465 MET A 331 REMARK 465 GLU A 332 REMARK 465 LEU A 333 REMARK 465 ASP A 334 REMARK 465 ASP A 335 REMARK 465 GLY A 355 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 846 O HOH A 866 1.96 REMARK 500 O HOH A 808 O HOH A 878 2.04 REMARK 500 O HOH A 862 O HOH A 936 2.07 REMARK 500 O HOH A 832 O HOH A 845 2.11 REMARK 500 OE1 GLU A 10 O HOH A 501 2.11 REMARK 500 O HOH A 958 O HOH A 960 2.14 REMARK 500 O HOH A 713 O HOH A 919 2.15 REMARK 500 O HOH A 890 O HOH A 894 2.15 REMARK 500 O HOH A 695 O HOH A 704 2.15 REMARK 500 O HOH A 771 O HOH A 835 2.16 REMARK 500 O HOH A 774 O HOH A 835 2.17 REMARK 500 O HOH A 517 O HOH A 526 2.18 REMARK 500 O HOH A 803 O HOH A 918 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 147 43.42 -147.16 REMARK 500 ASP A 165 94.31 60.88 REMARK 500 ALA A 187 179.47 65.58 REMARK 500 ASN A 199 19.12 -163.58 REMARK 500 LEU A 292 49.68 -95.45 REMARK 500 ASP A 316 91.85 -162.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 956 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 7.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DX4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 413 DBREF 4XP3 A 8 358 UNP P63086 MK01_RAT 8 358 SEQRES 1 A 351 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY SEQRES 2 A 351 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA SEQRES 3 A 351 TYR GLY MET VAL CYS SER ALA TYR ASP ASN LEU ASN LYS SEQRES 4 A 351 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS SEQRES 5 A 351 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE SEQRES 6 A 351 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN SEQRES 7 A 351 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP SEQRES 8 A 351 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR SEQRES 9 A 351 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE SEQRES 10 A 351 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR SEQRES 11 A 351 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 12 A 351 SER ASN LEU LEU LEU ASN THR THR CME ASP LEU LYS ILE SEQRES 13 A 351 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS SEQRES 14 A 351 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG SEQRES 15 A 351 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY SEQRES 16 A 351 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE SEQRES 17 A 351 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY SEQRES 18 A 351 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE SEQRES 19 A 351 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CME ILE ILE SEQRES 20 A 351 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS SEQRES 21 A 351 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA SEQRES 22 A 351 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR SEQRES 23 A 351 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU SEQRES 24 A 351 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP SEQRES 25 A 351 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU SEQRES 26 A 351 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE SEQRES 27 A 351 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER MODRES 4XP3 CME A 159 CYS MODIFIED RESIDUE MODRES 4XP3 CME A 252 CYS MODIFIED RESIDUE HET CME A 159 10 HET CME A 252 10 HET DX4 A 401 11 HET SO4 A 402 5 HET DMS A 403 4 HET DMS A 404 4 HET DMS A 405 4 HET DMS A 406 4 HET DMS A 407 4 HET DMS A 408 4 HET DMS A 409 4 HET DMS A 410 4 HET DMS A 411 4 HET DMS A 412 4 HET DMS A 413 4 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM DX4 2-AMINO-1,9-DIHYDRO-6H-PURINE-6-THIONE HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 2 DX4 C5 H5 N5 S FORMUL 3 SO4 O4 S 2- FORMUL 4 DMS 11(C2 H6 O S) FORMUL 15 HOH *460(H2 O) HELIX 1 AA1 HIS A 59 PHE A 76 1 18 HELIX 2 AA2 LEU A 110 GLN A 117 1 8 HELIX 3 AA3 SER A 120 ALA A 141 1 22 HELIX 4 AA4 LYS A 149 SER A 151 5 3 HELIX 5 AA5 ASP A 173 ASP A 177 5 5 HELIX 6 AA6 THR A 188 ARG A 192 5 5 HELIX 7 AA7 ALA A 193 ASN A 199 1 7 HELIX 8 AA8 LYS A 205 ASN A 222 1 18 HELIX 9 AA9 HIS A 230 LEU A 232 5 3 HELIX 10 AB1 ASP A 233 GLY A 243 1 11 HELIX 11 AB2 SER A 246 CME A 252 1 7 HELIX 12 AB3 ASN A 255 SER A 264 1 10 HELIX 13 AB4 PRO A 272 PHE A 277 1 6 HELIX 14 AB5 ASP A 281 LEU A 292 1 12 HELIX 15 AB6 GLU A 301 ALA A 307 1 7 HELIX 16 AB7 HIS A 308 GLU A 312 5 5 HELIX 17 AB8 ASP A 316 GLU A 320 5 5 HELIX 18 AB9 PRO A 337 THR A 349 1 13 HELIX 19 AC1 ALA A 350 GLN A 353 5 4 SHEET 1 AA1 2 MET A 11 VAL A 12 0 SHEET 2 AA1 2 GLN A 15 VAL A 16 -1 O GLN A 15 N VAL A 12 SHEET 1 AA2 5 TYR A 23 GLU A 31 0 SHEET 2 AA2 5 MET A 36 ASP A 42 -1 O TYR A 41 N THR A 24 SHEET 3 AA2 5 VAL A 47 ILE A 54 -1 O VAL A 49 N ALA A 40 SHEET 4 AA2 5 VAL A 99 ASP A 104 -1 O VAL A 99 N ILE A 54 SHEET 5 AA2 5 ASP A 86 ILE A 88 -1 N ILE A 88 O TYR A 100 SHEET 1 AA3 3 THR A 108 ASP A 109 0 SHEET 2 AA3 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108 SHEET 3 AA3 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154 SHEET 1 AA4 2 VAL A 143 LEU A 144 0 SHEET 2 AA4 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144 LINK C THR A 158 N CME A 159 1555 1555 1.33 LINK C CME A 159 N ASP A 160 1555 1555 1.33 LINK C ASN A 251 N CME A 252 1555 1555 1.33 LINK C CME A 252 N ILE A 253 1555 1555 1.33 CISPEP 1 GLY A 20 PRO A 21 0 1.10 SITE 1 AC1 10 ALA A 50 LYS A 52 GLN A 103 ASP A 104 SITE 2 AC1 10 LEU A 105 MET A 106 LEU A 154 DMS A 404 SITE 3 AC1 10 HOH A 619 HOH A 680 SITE 1 AC2 6 TYR A 185 ARG A 189 ARG A 192 TYR A 231 SITE 2 AC2 6 HOH A 734 HOH A 767 SITE 1 AC3 3 HIS A 297 GLN A 304 HOH A 759 SITE 1 AC4 6 ASP A 109 SER A 151 CYS A 164 DX4 A 401 SITE 2 AC4 6 HOH A 600 HOH A 511 SITE 1 AC5 3 THR A 188 TRP A 190 HOH A 788 SITE 1 AC6 2 LYS A 149 SER A 151 SITE 1 AC7 3 SER A 221 PRO A 224 PHE A 277 SITE 1 AC8 1 ASN A 222 SITE 1 AC9 6 LYS A 270 TRP A 273 LEU A 285 ASP A 289 SITE 2 AC9 6 HOH A 764 HOH A 644 SITE 1 AD1 10 HIS A 118 LEU A 119 ILE A 124 LEU A 220 SITE 2 AD1 10 ASN A 279 ALA A 280 HOH A 756 HOH A 622 SITE 3 AD1 10 HOH A 635 HOH A 530 SITE 1 AD2 5 ARG A 77 TYR A 137 ALA A 323 GLU A 324 SITE 2 AD2 5 HOH A 775 SITE 1 AD3 5 LEU A 105 MET A 106 GLU A 107 ASN A 156 SITE 2 AD3 5 THR A 157 SITE 1 AD4 5 ARG A 75 PRO A 326 PHE A 327 LYS A 328 SITE 2 AD4 5 PHE A 329 CRYST1 48.600 69.683 59.819 90.00 108.91 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020576 0.000000 0.007049 0.00000 SCALE2 0.000000 0.014351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017671 0.00000