HEADER TRANSFERASE 19-JAN-15 4XQG TITLE CRYSTAL STRUCTURE OF THE HOMOSPERMIDINE SYNTHASE (HSS) VARIANT E237Q TITLE 2 FROM BLASTOCHLORIS VIRIDIS IN COMPLEX WITH NAD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSS; COMPND 5 EC: 2.5.1.44; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 3 ORGANISM_TAXID: 1079; SOURCE 4 GENE: HSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM14 KEYWDS HOMOSPERMIDINE SYNTHASE, OXIDOREDUCTASE, TRANSFERASE, ROSSMAN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR S.KROSSA REVDAT 3 10-JAN-24 4XQG 1 HETSYN REVDAT 2 07-MAR-18 4XQG 1 REMARK REVDAT 1 27-JAN-16 4XQG 0 JRNL AUTH S.KROSSA,A.FAUST,D.OBER,A.J.SCHEIDIG JRNL TITL COMPREHENSIVE STRUCTURAL CHARACTERIZATION OF THE BACTERIAL JRNL TITL 2 HOMOSPERMIDINE SYNTHASE-AN ESSENTIAL ENZYME OF THE POLYAMINE JRNL TITL 3 METABOLISM. JRNL REF SCI REP V. 6 19501 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26776105 JRNL DOI 10.1038/SREP19501 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 188912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 9510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9977 - 4.2878 0.99 6463 332 0.1369 0.1553 REMARK 3 2 4.2878 - 3.4492 0.98 6240 330 0.1220 0.1402 REMARK 3 3 3.4492 - 3.0270 0.99 6266 334 0.1311 0.1515 REMARK 3 4 3.0270 - 2.7566 0.99 6192 348 0.1300 0.1585 REMARK 3 5 2.7566 - 2.5626 1.00 6253 309 0.1199 0.1546 REMARK 3 6 2.5626 - 2.4137 0.97 6016 337 0.1076 0.1387 REMARK 3 7 2.4137 - 2.2944 0.99 6153 333 0.1075 0.1466 REMARK 3 8 2.2944 - 2.1956 0.99 6157 329 0.1057 0.1415 REMARK 3 9 2.1956 - 2.1119 0.99 6130 337 0.1048 0.1441 REMARK 3 10 2.1119 - 2.0397 0.99 6149 322 0.1074 0.1439 REMARK 3 11 2.0397 - 1.9764 0.99 6128 325 0.1065 0.1484 REMARK 3 12 1.9764 - 1.9203 0.98 6040 319 0.1114 0.1448 REMARK 3 13 1.9203 - 1.8701 0.99 6103 324 0.1095 0.1468 REMARK 3 14 1.8701 - 1.8247 0.99 6077 313 0.1125 0.1475 REMARK 3 15 1.8247 - 1.7835 0.99 6139 313 0.1173 0.1623 REMARK 3 16 1.7835 - 1.7457 0.99 6119 315 0.1186 0.1727 REMARK 3 17 1.7457 - 1.7110 0.99 6092 277 0.1250 0.1788 REMARK 3 18 1.7110 - 1.6789 0.99 6120 322 0.1277 0.1778 REMARK 3 19 1.6789 - 1.6490 0.97 5940 319 0.1369 0.1891 REMARK 3 20 1.6490 - 1.6212 0.96 5857 329 0.1464 0.1837 REMARK 3 21 1.6212 - 1.5951 0.98 6070 313 0.1481 0.1836 REMARK 3 22 1.5951 - 1.5707 0.99 6054 306 0.1495 0.1846 REMARK 3 23 1.5707 - 1.5477 0.99 6069 309 0.1633 0.1981 REMARK 3 24 1.5477 - 1.5259 0.99 6070 327 0.1727 0.2273 REMARK 3 25 1.5259 - 1.5054 0.98 6015 325 0.1861 0.2275 REMARK 3 26 1.5054 - 1.4859 0.98 6006 324 0.1934 0.2421 REMARK 3 27 1.4859 - 1.4674 0.98 5962 345 0.2113 0.2665 REMARK 3 28 1.4674 - 1.4498 0.94 5784 310 0.2349 0.2727 REMARK 3 29 1.4498 - 1.4330 0.87 5312 305 0.2584 0.2727 REMARK 3 30 1.4330 - 1.4169 0.56 3426 179 0.2945 0.3474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7965 REMARK 3 ANGLE : 1.363 10886 REMARK 3 CHIRALITY : 0.257 1167 REMARK 3 PLANARITY : 0.006 1423 REMARK 3 DIHEDRAL : 14.439 2888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 189622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.417 REMARK 200 RESOLUTION RANGE LOW (A) : 89.794 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88600 REMARK 200 R SYM FOR SHELL (I) : 0.88600 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-ACETATE, AMMONIUMACETATE, PEG REMARK 280 10000, NDSB-201, AGMATINE, 1,4-DIAMINOBUTANE, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 461 HH22 ARG B 476 1.53 REMARK 500 OE2 GLU B 187 HH12 ARG B 428 1.56 REMARK 500 O HOH A 783 O HOH A 973 1.96 REMARK 500 O HOH A 1106 O HOH A 1107 2.02 REMARK 500 OD1 ASP B 466 O HOH B 1142 2.02 REMARK 500 O2 1PS B 510 O HOH B 884 2.06 REMARK 500 O HOH B 900 O HOH B 1123 2.06 REMARK 500 O HOH A 1117 O HOH A 1119 2.06 REMARK 500 O HOH B 746 O HOH B 986 2.07 REMARK 500 O HOH A 876 O HOH A 900 2.10 REMARK 500 O HOH B 1151 O HOH B 1156 2.11 REMARK 500 O HOH B 978 O HOH B 1043 2.11 REMARK 500 OD1 ASP B 426 O HOH B 856 2.12 REMARK 500 O HOH A 1153 O HOH B 765 2.13 REMARK 500 O HOH B 1078 O HOH B 1084 2.14 REMARK 500 O HOH A 809 O HOH A 1027 2.15 REMARK 500 O HOH A 1103 O HOH B 1059 2.16 REMARK 500 O HOH B 858 O HOH B 981 2.16 REMARK 500 O HOH A 819 O HOH B 1090 2.16 REMARK 500 O HOH A 841 O HOH A 1020 2.17 REMARK 500 OD2 ASP A 261 O HOH A 601 2.17 REMARK 500 NZ LYS A 171 O HOH A 913 2.18 REMARK 500 O HOH A 783 O HOH A 1040 2.18 REMARK 500 O HOH A 1076 O HOH A 1109 2.18 REMARK 500 O HOH A 1096 O HOH A 1099 2.19 REMARK 500 OD1 ASP A 466 O HOH A 871 2.19 REMARK 500 OD2 ASP B 477 O HOH B 1143 2.19 REMARK 500 O HOH B 645 O HOH B 1096 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 41 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 38.60 -96.60 REMARK 500 VAL A 115 146.52 -172.43 REMARK 500 CYS A 159 63.13 -118.78 REMARK 500 ASN A 162 100.31 -161.62 REMARK 500 SER A 230 115.59 -28.66 REMARK 500 MET A 287 -146.58 57.39 REMARK 500 MET A 287 -144.98 50.79 REMARK 500 ASN A 373 -69.97 71.43 REMARK 500 ASP A 466 86.52 -157.76 REMARK 500 PHE B 19 59.57 -140.79 REMARK 500 LEU B 120 129.11 -39.78 REMARK 500 CYS B 159 63.59 -114.47 REMARK 500 ASN B 162 101.73 -161.77 REMARK 500 SER B 230 117.92 -31.17 REMARK 500 MET B 287 -146.66 58.53 REMARK 500 MET B 287 -143.17 47.00 REMARK 500 ASN B 373 -74.80 74.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS B 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PLP RELATED DB: PDB REMARK 900 4PLP CONTAINS THE WILD-TYPE OF THE PROTEIN DBREF 4XQG A 3 477 UNP O32323 HSS_BLAVI 3 477 DBREF 4XQG B 3 477 UNP O32323 HSS_BLAVI 3 477 SEQADV 4XQG GLN A 237 UNP O32323 GLU 237 ENGINEERED MUTATION SEQADV 4XQG GLN B 237 UNP O32323 GLU 237 ENGINEERED MUTATION SEQRES 1 A 475 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 A 475 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 A 475 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 A 475 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 A 475 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 A 475 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 A 475 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 A 475 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 A 475 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 A 475 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 A 475 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 A 475 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 A 475 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 A 475 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 A 475 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 A 475 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 A 475 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 A 475 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 A 475 GLN GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 A 475 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 A 475 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 A 475 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 A 475 GLN TYR GLY PHE LEU VAL THR HIS ASN GLU SER ILE SER SEQRES 24 A 475 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 A 475 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 A 475 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 A 475 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 A 475 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 A 475 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 A 475 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 A 475 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 A 475 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 A 475 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 A 475 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 A 475 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 A 475 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 A 475 ARG ASN VAL LEU VAL ARG ASP SEQRES 1 B 475 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 B 475 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 B 475 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 B 475 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 B 475 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 B 475 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 B 475 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 B 475 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 B 475 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 B 475 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 B 475 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 B 475 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 B 475 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 B 475 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 B 475 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 B 475 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 B 475 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 B 475 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 B 475 GLN GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 B 475 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 B 475 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 B 475 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 B 475 GLN TYR GLY PHE LEU VAL THR HIS ASN GLU SER ILE SER SEQRES 24 B 475 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 B 475 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 B 475 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 B 475 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 B 475 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 B 475 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 B 475 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 B 475 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 B 475 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 B 475 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 B 475 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 B 475 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 B 475 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 B 475 ARG ASN VAL LEU VAL ARG ASP HET NAD A 501 70 HET SO4 A 502 5 HET 1PS A 503 24 HET 1PS A 504 24 HET AG2 A 505 23 HET ACT A 506 7 HET NAD B 501 70 HET SO4 B 502 5 HET SO4 B 503 5 HET 1PS B 504 48 HET AG2 B 505 23 HET ACT B 506 7 HET ACT B 507 7 HET ACT B 508 7 HET ACT B 509 7 HET 1PS B 510 48 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM AG2 AGMATINE HETNAM ACT ACETATE ION HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 1PS 4(C8 H11 N O3 S) FORMUL 7 AG2 2(C5 H14 N4) FORMUL 8 ACT 5(C2 H3 O2 1-) FORMUL 19 HOH *1146(H2 O) HELIX 1 AA1 GLY A 20 HIS A 33 1 14 HELIX 2 AA2 ASP A 37 SER A 39 5 3 HELIX 3 AA3 SER A 47 ARG A 57 1 11 HELIX 4 AA4 ASN A 70 THR A 80 1 11 HELIX 5 AA5 SER A 96 ASN A 107 1 12 HELIX 6 AA6 LYS A 129 ARG A 133 5 5 HELIX 7 AA7 SER A 134 LYS A 149 1 16 HELIX 8 AA8 GLY A 164 LEU A 181 1 18 HELIX 9 AA9 THR A 190 LEU A 201 1 12 HELIX 10 AB1 SER A 230 GLN A 240 1 11 HELIX 11 AB2 HIS A 296 LEU A 306 1 11 HELIX 12 AB3 CYS A 328 GLY A 342 1 15 HELIX 13 AB4 ASP A 352 THR A 354 5 3 HELIX 14 AB5 SER A 382 ALA A 390 1 9 HELIX 15 AB6 ASN A 394 ASN A 414 1 21 HELIX 16 AB7 ASP A 423 LEU A 425 5 3 HELIX 17 AB8 ASP A 426 THR A 435 1 10 HELIX 18 AB9 PRO A 436 LEU A 438 5 3 HELIX 19 AC1 GLN A 469 LEU A 474 1 6 HELIX 20 AC2 GLY B 20 HIS B 33 1 14 HELIX 21 AC3 ASP B 37 SER B 39 5 3 HELIX 22 AC4 SER B 47 ARG B 57 1 11 HELIX 23 AC5 ASN B 70 THR B 80 1 11 HELIX 24 AC6 SER B 96 ASN B 107 1 12 HELIX 25 AC7 LYS B 129 ARG B 133 5 5 HELIX 26 AC8 SER B 134 LYS B 149 1 16 HELIX 27 AC9 GLY B 164 GLY B 182 1 19 HELIX 28 AD1 THR B 190 GLY B 202 1 13 HELIX 29 AD2 SER B 230 GLN B 240 1 11 HELIX 30 AD3 HIS B 296 LEU B 306 1 11 HELIX 31 AD4 CYS B 328 GLY B 342 1 15 HELIX 32 AD5 SER B 382 ALA B 390 1 9 HELIX 33 AD6 ASN B 394 ASN B 414 1 21 HELIX 34 AD7 ASP B 423 LEU B 425 5 3 HELIX 35 AD8 ASP B 426 THR B 435 1 10 HELIX 36 AD9 PRO B 436 LEU B 438 5 3 HELIX 37 AE1 GLN B 469 LEU B 474 1 6 SHEET 1 AA1 2 HIS A 8 ARG A 9 0 SHEET 2 AA1 2 PHE A 34 ALA A 35 1 O ALA A 35 N HIS A 8 SHEET 1 AA2 7 ARG A 60 ILE A 62 0 SHEET 2 AA2 7 LEU A 41 ILE A 44 1 N VAL A 43 O ILE A 62 SHEET 3 AA2 7 ILE A 14 ILE A 17 1 N MET A 16 O ILE A 44 SHEET 4 AA2 7 PHE A 87 ASN A 90 1 O VAL A 89 N VAL A 15 SHEET 5 AA2 7 LEU A 110 ILE A 112 1 O LEU A 110 N CYS A 88 SHEET 6 AA2 7 ALA A 155 SER A 157 1 O VAL A 156 N TYR A 111 SHEET 7 AA2 7 ILE A 419 GLU A 421 1 O VAL A 420 N ALA A 155 SHEET 1 AA3 5 THR A 320 HIS A 326 0 SHEET 2 AA3 5 GLY A 205 ASP A 212 1 N ILE A 208 O ALA A 324 SHEET 3 AA3 5 ASP A 361 TYR A 368 -1 O LEU A 366 N HIS A 207 SHEET 4 AA3 5 ALA A 374 SER A 379 -1 O TYR A 375 N LEU A 367 SHEET 5 AA3 5 VAL A 441 THR A 446 -1 O VAL A 444 N TRP A 376 SHEET 1 AA4 2 ARG A 215 ALA A 216 0 SHEET 2 AA4 2 ILE A 356 ASP A 358 -1 O VAL A 357 N ARG A 215 SHEET 1 AA5 2 VAL A 224 ASN A 227 0 SHEET 2 AA5 2 ASP A 347 ILE A 350 1 O ARG A 349 N PHE A 225 SHEET 1 AA6 3 PRO A 241 GLY A 245 0 SHEET 2 AA6 3 GLY A 267 PRO A 273 -1 O LEU A 270 N ALA A 242 SHEET 3 AA6 3 ALA A 257 ARG A 258 -1 N ARG A 258 O TYR A 269 SHEET 1 AA7 2 ARG A 278 THR A 283 0 SHEET 2 AA7 2 MET A 287 PHE A 292 -1 O GLY A 291 N VAL A 279 SHEET 1 AA8 2 VAL A 308 ARG A 309 0 SHEET 2 AA8 2 ALA A 315 TYR A 317 -1 O VAL A 316 N VAL A 308 SHEET 1 AA9 2 HIS B 8 ARG B 9 0 SHEET 2 AA9 2 PHE B 34 ALA B 35 1 O ALA B 35 N HIS B 8 SHEET 1 AB1 7 ARG B 60 ILE B 62 0 SHEET 2 AB1 7 LEU B 41 ILE B 44 1 N VAL B 43 O ARG B 60 SHEET 3 AB1 7 ILE B 14 ILE B 17 1 N MET B 16 O VAL B 42 SHEET 4 AB1 7 PHE B 87 ASN B 90 1 O VAL B 89 N VAL B 15 SHEET 5 AB1 7 LEU B 110 ILE B 112 1 O LEU B 110 N CYS B 88 SHEET 6 AB1 7 ALA B 155 SER B 157 1 O VAL B 156 N TYR B 111 SHEET 7 AB1 7 ILE B 419 GLU B 421 1 O VAL B 420 N SER B 157 SHEET 1 AB2 5 THR B 320 HIS B 326 0 SHEET 2 AB2 5 GLY B 205 ASP B 212 1 N ILE B 208 O ALA B 324 SHEET 3 AB2 5 ASP B 361 TYR B 368 -1 O LEU B 366 N HIS B 207 SHEET 4 AB2 5 ALA B 374 SER B 379 -1 O TYR B 375 N LEU B 367 SHEET 5 AB2 5 VAL B 441 THR B 446 -1 O VAL B 444 N TRP B 376 SHEET 1 AB3 2 ARG B 215 ALA B 216 0 SHEET 2 AB3 2 ILE B 356 ASP B 358 -1 O VAL B 357 N ARG B 215 SHEET 1 AB4 2 VAL B 224 ASN B 227 0 SHEET 2 AB4 2 ASP B 347 ILE B 350 1 O ARG B 349 N PHE B 225 SHEET 1 AB5 3 PRO B 241 GLY B 245 0 SHEET 2 AB5 3 GLY B 267 PRO B 273 -1 O LEU B 270 N ALA B 242 SHEET 3 AB5 3 ALA B 257 ARG B 258 -1 N ARG B 258 O TYR B 269 SHEET 1 AB6 2 ARG B 278 THR B 283 0 SHEET 2 AB6 2 MET B 287 PHE B 292 -1 O GLN B 289 N SER B 281 SHEET 1 AB7 2 VAL B 308 ARG B 309 0 SHEET 2 AB7 2 ALA B 315 TYR B 317 -1 O VAL B 316 N VAL B 308 CISPEP 1 GLY A 82 PRO A 83 0 3.17 CISPEP 2 ASN A 162 PRO A 163 0 5.73 CISPEP 3 ARG A 454 PRO A 455 0 -0.05 CISPEP 4 GLY B 82 PRO B 83 0 -7.79 CISPEP 5 ASN B 162 PRO B 163 0 5.55 CISPEP 6 ARG B 454 PRO B 455 0 -0.02 SITE 1 AC1 31 GLY A 20 SER A 21 ILE A 22 ASP A 45 SITE 2 AC1 31 PRO A 46 SER A 47 ALA A 65 VAL A 66 SITE 3 AC1 31 LEU A 91 SER A 92 VAL A 93 THR A 95 SITE 4 AC1 31 THR A 114 VAL A 115 GLY A 160 ALA A 161 SITE 5 AC1 31 ASN A 162 PRO A 163 TRP A 229 SER A 230 SITE 6 AC1 31 ILE A 350 VAL A 400 HOH A 736 HOH A 739 SITE 7 AC1 31 HOH A 794 HOH A 807 HOH A 816 HOH A 832 SITE 8 AC1 31 HOH A 907 HOH A 965 HOH A1112 SITE 1 AC2 5 CYS A 264 ARG A 309 ALA A 315 ARG A 318 SITE 2 AC2 5 HOH A1146 SITE 1 AC3 5 SER A 47 ASP A 48 GLU A 49 ASP A 347 SITE 2 AC3 5 TRP A 348 SITE 1 AC4 4 MET A 338 GLY A 342 LYS A 343 ARG A 344 SITE 1 AC5 10 ARG A 146 ARG A 191 ASP A 304 PHE A 305 SITE 2 AC5 10 ASP A 424 HOH A 634 HOH A 673 HOH A 764 SITE 3 AC5 10 HOH A 836 HOH A 884 SITE 1 AC6 5 ARG A 215 PRO B 221 PHE B 222 HOH B 760 SITE 2 AC6 5 HOH B 777 SITE 1 AC7 32 PHE B 19 GLY B 20 SER B 21 ILE B 22 SITE 2 AC7 32 ASP B 45 PRO B 46 ALA B 65 VAL B 66 SITE 3 AC7 32 LEU B 91 SER B 92 VAL B 93 THR B 95 SITE 4 AC7 32 THR B 114 VAL B 115 GLY B 160 ALA B 161 SITE 5 AC7 32 ASN B 162 PRO B 163 TRP B 229 SER B 230 SITE 6 AC7 32 ILE B 350 VAL B 400 HOH B 663 HOH B 671 SITE 7 AC7 32 HOH B 688 HOH B 746 HOH B 747 HOH B 751 SITE 8 AC7 32 HOH B 792 HOH B 801 HOH B 986 HOH B1085 SITE 1 AC8 7 CYS B 264 ARG B 309 GLN B 314 ALA B 315 SITE 2 AC8 7 ARG B 318 HOH B1071 HOH B1100 SITE 1 AC9 5 PRO A 221 PHE A 222 HOH A 851 HOH A 874 SITE 2 AC9 5 ARG B 215 SITE 1 AD1 8 LEU A 457 PHE B 124 LEU B 239 MET B 338 SITE 2 AD1 8 GLY B 342 LYS B 343 ARG B 344 HOH B 898 SITE 1 AD2 9 ARG B 146 ARG B 191 ASP B 304 PHE B 305 SITE 2 AD2 9 ASP B 424 HOH B 682 HOH B 769 HOH B 812 SITE 3 AD2 9 HOH B 879 SITE 1 AD3 6 PHE B 225 VAL B 235 ARG B 344 TRP B 348 SITE 2 AD3 6 HOH B 850 HOH B 985 SITE 1 AD4 6 LYS B 171 TRP B 194 LEU B 425 ASP B 426 SITE 2 AD4 6 PHE B 427 HOH B1024 SITE 1 AD5 6 SER B 167 VAL B 170 LYS B 171 ILE B 302 SITE 2 AD5 6 PHE B 305 ASP B 423 SITE 1 AD6 3 TYR B 7 ARG B 429 HOH B1034 SITE 1 AD7 8 GLU B 49 ASP B 347 TRP B 348 ARG B 349 SITE 2 AD7 8 ILE B 350 HOH B 833 HOH B 884 HOH B1065 CRYST1 59.809 109.250 157.640 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006344 0.00000