HEADER DNA 20-JAN-15 4XQZ TITLE CALCIUM(II) AND COPPER(II) BOUND TO THE Z-DNA FORM OF D(CGCGCG), TITLE 2 COMPLEXED BY CHLORIDE AND MES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS Z-DNA, COPPER(II), DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.ROHNER,A.MEDINA-MOLNER,B.SPINGLER REVDAT 4 10-JAN-24 4XQZ 1 LINK REVDAT 3 13-SEP-17 4XQZ 1 REMARK REVDAT 2 13-JUL-16 4XQZ 1 JRNL REVDAT 1 27-JAN-16 4XQZ 0 JRNL AUTH M.ROHNER,A.MEDINA-MOLNER,B.SPINGLER JRNL TITL N,N,O AND N,O,N MERIDIONAL CIS COORDINATION OF TWO GUANINES JRNL TITL 2 TO COPPER(II) BY D(CGCGCG)2. JRNL REF INORG.CHEM. V. 55 6130 2016 JRNL REFN ISSN 0020-1669 JRNL PMID 27266259 JRNL DOI 10.1021/ACS.INORGCHEM.6B00672 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1834) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 10790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8696 - 4.2965 0.97 1227 141 0.2028 0.2219 REMARK 3 2 4.2965 - 3.4130 0.96 1201 140 0.1830 0.2630 REMARK 3 3 3.4130 - 2.9824 0.95 1199 139 0.2311 0.3226 REMARK 3 4 2.9824 - 2.7101 0.96 1226 139 0.2553 0.3777 REMARK 3 5 2.7101 - 2.5161 0.96 1201 131 0.2665 0.3518 REMARK 3 6 2.5161 - 2.3678 0.95 1231 136 0.2866 0.3690 REMARK 3 7 2.3678 - 2.2493 0.95 1222 138 0.2939 0.3706 REMARK 3 8 2.2493 - 2.1515 0.94 1183 136 0.2730 0.3296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1080 REMARK 3 ANGLE : 1.080 1654 REMARK 3 CHIRALITY : 0.052 185 REMARK 3 PLANARITY : 0.006 48 REMARK 3 DIHEDRAL : 31.176 452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000204344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 183 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : STOE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-AREA REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.151 REMARK 200 RESOLUTION RANGE LOW (A) : 24.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.780 REMARK 200 R MERGE (I) : 0.06120 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.55 REMARK 200 R MERGE FOR SHELL (I) : 0.24630 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4XQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, CALCIUM LACTATE, DIOXANE,, PH REMARK 280 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.62650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG G 2 O3' DG G 2 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 1 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC G 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MES D 102 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 N7 REMARK 620 2 CL A 103 CL 80.9 REMARK 620 3 DG D 2 N7 162.6 82.9 REMARK 620 4 MES D 102 S 96.3 157.1 101.0 REMARK 620 5 MES D 102 O3S 96.4 119.8 97.1 37.7 REMARK 620 6 MES D 102 O1S 85.0 161.5 109.4 36.7 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 OP1 REMARK 620 2 HOH A 201 O 71.1 REMARK 620 3 HOH A 202 O 65.0 130.0 REMARK 620 4 DG G 2 OP1 146.7 135.5 94.4 REMARK 620 5 DG H 4 OP1 120.3 110.4 111.7 40.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 2 N7 REMARK 620 2 HOH B 108 O 97.8 REMARK 620 3 DG C 2 N7 154.9 105.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 2 OP2 REMARK 620 2 DC D 3 OP1 35.1 REMARK 620 3 DG E 2 OP1 124.5 95.0 REMARK 620 4 HOH E 202 O 131.3 102.0 7.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 4 N7 REMARK 620 2 HOH C 205 O 59.4 REMARK 620 3 DG D 6 N7 58.8 2.3 REMARK 620 4 HOH D 203 O 57.0 5.0 6.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU E 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 2 N7 REMARK 620 2 DG H 2 N7 132.1 REMARK 620 3 CL H 104 CL 104.4 74.6 REMARK 620 4 HOH H 208 O 98.0 95.1 156.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU G 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG F 2 N7 REMARK 620 2 CL F 101 CL 82.7 REMARK 620 3 HOH F 206 O 101.3 101.9 REMARK 620 4 DG G 2 N7 153.3 102.9 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU H 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG G 4 N7 REMARK 620 2 HOH G 202 O 54.2 REMARK 620 3 DG H 6 N7 56.6 6.7 REMARK 620 4 CL H 102 CL 60.2 8.4 3.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU H 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XQY RELATED DB: PDB REMARK 900 RELATED ID: 4XSN RELATED DB: PDB DBREF 4XQZ A 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ B 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ C 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ D 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ E 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ F 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ G 1 6 PDB 4XQZ 4XQZ 1 6 DBREF 4XQZ H 1 6 PDB 4XQZ 4XQZ 1 6 SEQRES 1 A 6 DC DG DC DG DC DG SEQRES 1 B 6 DC DG DC DG DC DG SEQRES 1 C 6 DC DG DC DG DC DG SEQRES 1 D 6 DC DG DC DG DC DG SEQRES 1 E 6 DC DG DC DG DC DG SEQRES 1 F 6 DC DG DC DG DC DG SEQRES 1 G 6 DC DG DC DG DC DG SEQRES 1 H 6 DC DG DC DG DC DG HET CU A 101 1 HET CA A 102 1 HET CL A 103 1 HET CU C 101 1 HET CL C 102 1 HET CU D 101 1 HET MES D 102 5 HET MOH D 103 2 HET CL D 104 1 HET CU E 101 1 HET CA E 102 1 HET CL F 101 1 HET CU G 101 1 HET CU H 101 1 HET CL H 102 1 HET CL H 103 1 HET CL H 104 1 HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM MOH METHANOL FORMUL 9 CU 6(CU 2+) FORMUL 10 CA 2(CA 2+) FORMUL 11 CL 7(CL 1-) FORMUL 15 MES C6 H13 N O4 S FORMUL 16 MOH C H4 O FORMUL 26 HOH *57(H2 O) LINK N7 DG A 2 CU CU A 101 1555 1555 2.03 LINK OP1 DG A 2 CA CA A 102 1555 1555 2.62 LINK CU CU A 101 CL CL A 103 1555 1555 2.47 LINK CU CU A 101 N7 DG D 2 1555 1555 2.00 LINK CU CU A 101 S MES D 102 1555 1555 2.44 LINK CU CU A 101 O3S MES D 102 1555 1555 1.86 LINK CU CU A 101 O1S MES D 102 1555 1555 2.27 LINK CA CA A 102 O HOH A 201 1555 1555 2.99 LINK CA CA A 102 O HOH A 202 1555 1555 2.35 LINK CA CA A 102 OP1 DG G 2 2545 1555 2.53 LINK CA CA A 102 OP1 DG H 4 1555 1555 2.58 LINK N7 DG B 2 CU CU C 101 1555 1555 1.92 LINK O HOH B 108 CU CU C 101 1555 1555 2.31 LINK N7 DG C 2 CU CU C 101 1555 1555 1.98 LINK OP2 DG C 2 CA CA E 102 1555 2656 2.53 LINK N7 DG C 4 CU CU D 101 1555 2646 2.08 LINK O HOH C 205 CU CU D 101 2656 1555 2.52 LINK OP1 DC D 3 CA CA E 102 1555 1565 2.42 LINK N7 DG D 6 CU CU D 101 1555 1555 1.94 LINK CU CU D 101 O HOH D 203 1555 1555 2.05 LINK N7 DG E 2 CU CU E 101 1555 1555 2.16 LINK OP1 DG E 2 CA CA E 102 1555 1555 2.83 LINK CU CU E 101 N7 DG H 2 1555 1555 2.08 LINK CU CU E 101 CL CL H 104 1555 1555 2.59 LINK CU CU E 101 O HOH H 208 1555 1555 2.28 LINK CA CA E 102 O HOH E 202 1555 1555 2.43 LINK N7 DG F 2 CU CU G 101 1555 1555 2.03 LINK CL CL F 101 CU CU G 101 1555 1555 2.67 LINK O HOH F 206 CU CU G 101 1555 1555 2.58 LINK N7 DG G 2 CU CU G 101 1555 1555 1.85 LINK N7 DG G 4 CU CU H 101 1555 2545 2.02 LINK O HOH G 202 CU CU H 101 2555 1555 2.31 LINK N7 DG H 6 CU CU H 101 1555 1555 2.04 LINK CU CU H 101 CL CL H 102 1555 1555 2.53 SITE 1 AC1 5 DG A 2 CL A 103 DG D 2 MES D 102 SITE 2 AC1 5 CL D 104 SITE 1 AC2 4 DG A 2 HOH A 201 HOH A 202 DG H 4 SITE 1 AC3 5 DG A 2 DC A 3 CU A 101 DG D 2 SITE 2 AC3 5 CL D 104 SITE 1 AC4 5 DG B 2 HOH B 105 HOH B 108 DG C 2 SITE 2 AC4 5 CL C 102 SITE 1 AC5 4 DC B 1 HOH B 108 DC C 1 CU C 101 SITE 1 AC6 2 DG D 6 HOH D 203 SITE 1 AC7 6 DC A 1 DG A 2 CU A 101 DC D 1 SITE 2 AC7 6 DG D 2 CL D 104 SITE 1 AC8 5 CU A 101 CL A 103 DG D 2 DC D 3 SITE 2 AC8 5 MES D 102 SITE 1 AC9 4 DG E 2 DG H 2 CL H 104 HOH H 208 SITE 1 AD1 3 DC D 3 DG E 2 HOH E 202 SITE 1 AD2 4 DG F 2 DC F 3 DG G 2 CU G 101 SITE 1 AD3 5 DC F 1 DG F 2 CL F 101 HOH F 206 SITE 2 AD3 5 DG G 2 SITE 1 AD4 3 DG H 6 CL H 102 CL H 103 SITE 1 AD5 3 DG H 6 CU H 101 CL H 103 SITE 1 AD6 3 DG H 6 CU H 101 CL H 102 SITE 1 AD7 3 CU E 101 DG H 2 DC H 3 CRYST1 32.340 35.253 47.643 90.00 98.28 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030921 0.000000 0.004498 0.00000 SCALE2 0.000000 0.028366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021210 0.00000