HEADER TRANSFERASE 21-JAN-15 4XRG TITLE CRYSTAL STRUCTURE OF THE HOMOSPERMIDINE SYNTHASE (HSS) VARIANT H296S TITLE 2 FROM BLASTOCHLORIS VIRIDIS IN COMPLEX WITH NAD, PUTRESCINE AND TITLE 3 AGMATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSS; COMPND 5 EC: 2.5.1.44; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 3 ORGANISM_TAXID: 1079; SOURCE 4 GENE: HSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM14 KEYWDS HOMOSPERMIDINE SYNTHASE, OXIDOREDUCTASE, TRANSFERASE, ROSSMAN FOLD, KEYWDS 2 AGMATINE, PUTRESCINE EXPDTA X-RAY DIFFRACTION AUTHOR S.KROSSA REVDAT 3 10-JAN-24 4XRG 1 HETSYN REVDAT 2 07-MAR-18 4XRG 1 REMARK REVDAT 1 27-JAN-16 4XRG 0 JRNL AUTH S.KROSSA,A.FAUST,D.OBER,A.J.SCHEIDIG JRNL TITL COMPREHENSIVE STRUCTURAL CHARACTERIZATION OF THE BACTERIAL JRNL TITL 2 HOMOSPERMIDINE SYNTHASE-AN ESSENTIAL ENZYME OF THE POLYAMINE JRNL TITL 3 METABOLISM. JRNL REF SCI REP V. 6 19501 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26776105 JRNL DOI 10.1038/SREP19501 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 253030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 12745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9993 - 3.9571 1.00 8513 451 0.1358 0.1532 REMARK 3 2 3.9571 - 3.1739 1.00 8252 451 0.1338 0.1544 REMARK 3 3 3.1739 - 2.7825 1.00 8227 429 0.1421 0.1767 REMARK 3 4 2.7825 - 2.5327 1.00 8210 400 0.1285 0.1747 REMARK 3 5 2.5327 - 2.3537 1.00 8136 440 0.1232 0.1693 REMARK 3 6 2.3537 - 2.2165 1.00 8073 469 0.1232 0.1679 REMARK 3 7 2.2165 - 2.1066 1.00 8123 428 0.1282 0.1761 REMARK 3 8 2.1066 - 2.0157 1.00 8091 431 0.1221 0.1691 REMARK 3 9 2.0157 - 1.9386 1.00 8041 433 0.1216 0.1673 REMARK 3 10 1.9386 - 1.8722 1.00 8073 420 0.1272 0.1807 REMARK 3 11 1.8722 - 1.8140 1.00 8084 406 0.1320 0.1689 REMARK 3 12 1.8140 - 1.7624 1.00 8086 433 0.1506 0.2010 REMARK 3 13 1.7624 - 1.7163 1.00 8009 404 0.1776 0.2369 REMARK 3 14 1.7163 - 1.6746 1.00 8036 436 0.1829 0.2395 REMARK 3 15 1.6746 - 1.6367 1.00 8022 435 0.1935 0.2466 REMARK 3 16 1.6367 - 1.6020 1.00 8049 416 0.2013 0.2574 REMARK 3 17 1.6020 - 1.5701 0.99 7984 440 0.2125 0.2768 REMARK 3 18 1.5701 - 1.5406 0.99 7984 405 0.2247 0.2810 REMARK 3 19 1.5406 - 1.5132 0.99 7966 437 0.2387 0.3025 REMARK 3 20 1.5132 - 1.4876 0.99 8040 407 0.2492 0.2872 REMARK 3 21 1.4876 - 1.4637 0.99 7881 471 0.2704 0.3181 REMARK 3 22 1.4637 - 1.4412 0.99 7945 438 0.2794 0.3222 REMARK 3 23 1.4412 - 1.4201 0.99 7991 427 0.2968 0.3237 REMARK 3 24 1.4201 - 1.4001 0.99 7924 419 0.3072 0.3439 REMARK 3 25 1.4001 - 1.3813 0.99 7965 398 0.3188 0.3441 REMARK 3 26 1.3813 - 1.3634 0.98 7895 419 0.3414 0.3722 REMARK 3 27 1.3634 - 1.3464 0.98 7832 406 0.3534 0.3877 REMARK 3 28 1.3464 - 1.3302 0.97 7735 428 0.3627 0.3892 REMARK 3 29 1.3302 - 1.3147 0.95 7674 380 0.3654 0.4022 REMARK 3 30 1.3147 - 1.3000 0.93 7444 388 0.3769 0.3915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7927 REMARK 3 ANGLE : 1.258 10833 REMARK 3 CHIRALITY : 0.068 1163 REMARK 3 PLANARITY : 0.006 1423 REMARK 3 DIHEDRAL : 15.378 2894 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 440552 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 90.306 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17900 REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 4.51700 REMARK 200 R SYM FOR SHELL (I) : 4.51700 REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-ACETATE, AMMONIUM ACETATE, PEG REMARK 280 10000, NDSB-201, AGMATINE, SOAKED WITH PUTRESCINE PRIOR FLASH REMARK 280 COOLING, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.11650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.73700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.11650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.73700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 187 HH21 ARG A 428 1.59 REMARK 500 O HOH B 1097 O HOH B 1106 2.04 REMARK 500 O HOH B 854 O HOH B 1154 2.04 REMARK 500 O HOH B 709 O HOH B 1099 2.07 REMARK 500 OD1 ASP B 426 O HOH B 1020 2.08 REMARK 500 O HOH B 929 O HOH B 1079 2.08 REMARK 500 O HOH B 1120 O HOH B 1125 2.10 REMARK 500 O HOH B 1013 O HOH B 1022 2.11 REMARK 500 O HOH A 697 O HOH A 1078 2.11 REMARK 500 O HOH B 1011 O HOH B 1041 2.11 REMARK 500 O HOH A 810 O HOH B 1018 2.12 REMARK 500 O HOH A 879 O HOH B 931 2.12 REMARK 500 O HOH A 1068 O HOH A 1126 2.12 REMARK 500 O HOH B 611 O HOH B 653 2.15 REMARK 500 O HOH B 649 O HOH B 661 2.15 REMARK 500 O HOH A 926 O HOH A 989 2.15 REMARK 500 OD1 ASP B 37 OG SER B 39 2.15 REMARK 500 O HOH B 949 O HOH B 1041 2.16 REMARK 500 O HOH B 888 O HOH B 894 2.16 REMARK 500 O HOH B 649 O HOH B 659 2.16 REMARK 500 OD1 ASN B 416 O HOH B 1035 2.17 REMARK 500 O HOH A 1138 O HOH A 1171 2.17 REMARK 500 O HOH A 976 O HOH A 1145 2.17 REMARK 500 O HOH B 1147 O HOH B 1155 2.18 REMARK 500 O HOH B 928 O HOH B 934 2.18 REMARK 500 O HOH B 723 O HOH B 811 2.18 REMARK 500 O HOH B 883 O HOH B 915 2.18 REMARK 500 O HOH B 929 O HOH B 937 2.19 REMARK 500 O HOH A 977 O HOH A 1029 2.19 REMARK 500 O HOH A 1173 O HOH A 1178 2.19 REMARK 500 OD1 ASP B 447 O HOH B 957 2.19 REMARK 500 O HOH A 1021 O HOH A 1030 2.19 REMARK 500 O HOH B 785 O HOH B 1062 2.19 REMARK 500 O HOH B 640 O HOH B 651 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 603 O HOH A 625 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 124 50.30 -107.83 REMARK 500 PRO A 126 29.15 -71.84 REMARK 500 CYS A 159 66.91 -117.43 REMARK 500 SER A 230 118.22 -28.05 REMARK 500 MET A 287 -145.50 55.91 REMARK 500 MET A 287 -144.68 52.31 REMARK 500 ASN A 373 -69.64 73.57 REMARK 500 ASP A 466 83.03 -157.14 REMARK 500 CYS B 159 64.33 -116.00 REMARK 500 SER B 230 116.53 -32.59 REMARK 500 MET B 287 -145.64 61.38 REMARK 500 MET B 287 -144.31 53.17 REMARK 500 ASP B 310 -167.99 -79.57 REMARK 500 ASN B 373 -72.54 73.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1048 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1154 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1179 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 964 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1088 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B1114 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1127 DISTANCE = 5.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PUT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PUT B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PLP RELATED DB: PDB REMARK 900 4PLP CONTAINS THE WILD-TYPE REMARK 900 RELATED ID: 4XQE RELATED DB: PDB REMARK 900 4XQE CONTAINS SAME PROTEIN WITHOUT PUTRESCINE DBREF 4XRG A 3 476 UNP O32323 HSS_BLAVI 3 476 DBREF 4XRG B 3 476 UNP O32323 HSS_BLAVI 3 476 SEQADV 4XRG SER A 296 UNP O32323 HIS 296 ENGINEERED MUTATION SEQADV 4XRG SER B 296 UNP O32323 HIS 296 ENGINEERED MUTATION SEQRES 1 A 474 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 A 474 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 A 474 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 A 474 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 A 474 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 A 474 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 A 474 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 A 474 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 A 474 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 A 474 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 A 474 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 A 474 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 A 474 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 A 474 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 A 474 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 A 474 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 A 474 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 A 474 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 A 474 GLU GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 A 474 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 A 474 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 A 474 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 A 474 GLN TYR GLY PHE LEU VAL THR SER ASN GLU SER ILE SER SEQRES 24 A 474 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 A 474 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 A 474 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 A 474 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 A 474 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 A 474 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 A 474 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 A 474 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 A 474 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 A 474 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 A 474 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 A 474 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 A 474 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 A 474 ARG ASN VAL LEU VAL ARG SEQRES 1 B 474 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 B 474 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 B 474 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 B 474 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 B 474 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 B 474 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 B 474 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 B 474 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 B 474 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 B 474 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 B 474 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 B 474 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 B 474 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 B 474 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 B 474 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 B 474 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 B 474 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 B 474 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 B 474 GLU GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 B 474 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 B 474 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 B 474 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 B 474 GLN TYR GLY PHE LEU VAL THR SER ASN GLU SER ILE SER SEQRES 24 B 474 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 B 474 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 B 474 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 B 474 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 B 474 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 B 474 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 B 474 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 B 474 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 B 474 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 B 474 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 B 474 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 B 474 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 B 474 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 B 474 ARG ASN VAL LEU VAL ARG HET NAD A 501 70 HET AG2 A 502 23 HET PUT A 503 18 HET 1PS A 504 24 HET 1PS A 505 48 HET NAD B 501 70 HET AG2 B 502 23 HET PUT B 503 18 HET ACT B 504 7 HET ACT B 505 7 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM AG2 AGMATINE HETNAM PUT 1,4-DIAMINOBUTANE HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM ACT ACETATE ION HETSYN AG2 (4-AMINOBUTYL)GUANIDINE HETSYN PUT PUTRESCINE HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 AG2 2(C5 H14 N4) FORMUL 5 PUT 2(C4 H12 N2) FORMUL 6 1PS 2(C8 H11 N O3 S) FORMUL 11 ACT 2(C2 H3 O2 1-) FORMUL 13 HOH *1150(H2 O) HELIX 1 AA1 GLY A 20 HIS A 33 1 14 HELIX 2 AA2 ASP A 37 SER A 39 5 3 HELIX 3 AA3 SER A 47 GLY A 58 1 12 HELIX 4 AA4 ASN A 70 THR A 80 1 11 HELIX 5 AA5 SER A 96 ASN A 107 1 12 HELIX 6 AA6 LYS A 129 ARG A 133 5 5 HELIX 7 AA7 SER A 134 LYS A 149 1 16 HELIX 8 AA8 GLY A 164 LEU A 181 1 18 HELIX 9 AA9 THR A 190 GLY A 202 1 13 HELIX 10 AB1 SER A 230 GLN A 240 1 11 HELIX 11 AB2 SER A 296 LEU A 306 1 11 HELIX 12 AB3 CYS A 328 GLY A 342 1 15 HELIX 13 AB4 ASP A 352 THR A 354 5 3 HELIX 14 AB5 ILE A 383 ALA A 390 1 8 HELIX 15 AB6 ASN A 394 ASN A 414 1 21 HELIX 16 AB7 ASP A 423 LEU A 425 5 3 HELIX 17 AB8 ASP A 426 THR A 435 1 10 HELIX 18 AB9 PRO A 436 LEU A 438 5 3 HELIX 19 AC1 GLN A 469 LEU A 474 1 6 HELIX 20 AC2 GLY B 20 HIS B 33 1 14 HELIX 21 AC3 ASP B 37 SER B 39 5 3 HELIX 22 AC4 SER B 47 ARG B 57 1 11 HELIX 23 AC5 ASN B 70 THR B 80 1 11 HELIX 24 AC6 SER B 96 ASN B 107 1 12 HELIX 25 AC7 GLY B 121 ASP B 125 5 5 HELIX 26 AC8 LYS B 129 SER B 134 1 6 HELIX 27 AC9 SER B 134 LYS B 149 1 16 HELIX 28 AD1 GLY B 164 GLY B 182 1 19 HELIX 29 AD2 THR B 190 GLY B 202 1 13 HELIX 30 AD3 SER B 230 GLN B 240 1 11 HELIX 31 AD4 SER B 296 LEU B 306 1 11 HELIX 32 AD5 CYS B 328 GLY B 342 1 15 HELIX 33 AD6 ASP B 352 THR B 354 5 3 HELIX 34 AD7 ILE B 383 ALA B 390 1 8 HELIX 35 AD8 ASN B 394 ASN B 414 1 21 HELIX 36 AD9 ASP B 423 LEU B 425 5 3 HELIX 37 AE1 ASP B 426 THR B 435 1 10 HELIX 38 AE2 PRO B 436 LEU B 438 5 3 HELIX 39 AE3 GLN B 469 LEU B 474 1 6 SHEET 1 AA1 2 HIS A 8 ARG A 9 0 SHEET 2 AA1 2 PHE A 34 ALA A 35 1 O ALA A 35 N HIS A 8 SHEET 1 AA2 7 ARG A 60 ILE A 62 0 SHEET 2 AA2 7 LEU A 41 ILE A 44 1 N VAL A 43 O ILE A 62 SHEET 3 AA2 7 ILE A 14 ILE A 17 1 N MET A 16 O ILE A 44 SHEET 4 AA2 7 PHE A 87 ASN A 90 1 O VAL A 89 N VAL A 15 SHEET 5 AA2 7 LEU A 110 ASP A 113 1 O LEU A 110 N CYS A 88 SHEET 6 AA2 7 ALA A 155 SER A 157 1 O VAL A 156 N TYR A 111 SHEET 7 AA2 7 ILE A 419 GLU A 421 1 O VAL A 420 N ALA A 155 SHEET 1 AA3 5 THR A 320 HIS A 326 0 SHEET 2 AA3 5 GLY A 205 ASP A 212 1 N ILE A 208 O ALA A 324 SHEET 3 AA3 5 ILE A 360 TYR A 368 -1 O LEU A 366 N HIS A 207 SHEET 4 AA3 5 ALA A 374 SER A 382 -1 O TYR A 377 N VAL A 365 SHEET 5 AA3 5 VAL A 441 THR A 446 -1 O VAL A 444 N TRP A 376 SHEET 1 AA4 2 ARG A 215 ALA A 216 0 SHEET 2 AA4 2 ILE A 356 ASP A 358 -1 O VAL A 357 N ARG A 215 SHEET 1 AA5 2 VAL A 224 ASN A 227 0 SHEET 2 AA5 2 ASP A 347 ILE A 350 1 O ASP A 347 N PHE A 225 SHEET 1 AA6 3 PRO A 241 GLY A 245 0 SHEET 2 AA6 3 GLY A 267 PRO A 273 -1 O LEU A 270 N ALA A 242 SHEET 3 AA6 3 ALA A 257 ARG A 258 -1 N ARG A 258 O TYR A 269 SHEET 1 AA7 2 ARG A 278 THR A 283 0 SHEET 2 AA7 2 MET A 287 PHE A 292 -1 O GLN A 289 N SER A 281 SHEET 1 AA8 2 VAL A 308 ARG A 309 0 SHEET 2 AA8 2 ALA A 315 TYR A 317 -1 O TYR A 317 N VAL A 308 SHEET 1 AA9 2 HIS B 8 ARG B 9 0 SHEET 2 AA9 2 PHE B 34 ALA B 35 1 O ALA B 35 N HIS B 8 SHEET 1 AB1 7 ARG B 60 ILE B 62 0 SHEET 2 AB1 7 LEU B 41 ILE B 44 1 N VAL B 43 O ILE B 62 SHEET 3 AB1 7 ILE B 14 ILE B 17 1 N MET B 16 O VAL B 42 SHEET 4 AB1 7 PHE B 87 ASN B 90 1 O VAL B 89 N VAL B 15 SHEET 5 AB1 7 LEU B 110 ASP B 113 1 O LEU B 110 N CYS B 88 SHEET 6 AB1 7 ALA B 155 SER B 157 1 O VAL B 156 N TYR B 111 SHEET 7 AB1 7 ILE B 419 GLU B 421 1 O VAL B 420 N SER B 157 SHEET 1 AB2 5 THR B 320 HIS B 326 0 SHEET 2 AB2 5 GLY B 205 ASP B 212 1 N ILE B 208 O ALA B 324 SHEET 3 AB2 5 ILE B 360 TYR B 368 -1 O LEU B 366 N HIS B 207 SHEET 4 AB2 5 ALA B 374 SER B 382 -1 O TYR B 375 N LEU B 367 SHEET 5 AB2 5 VAL B 441 THR B 446 -1 O VAL B 444 N TRP B 376 SHEET 1 AB3 2 ARG B 215 ALA B 216 0 SHEET 2 AB3 2 ILE B 356 ASP B 358 -1 O VAL B 357 N ARG B 215 SHEET 1 AB4 2 VAL B 224 ASN B 227 0 SHEET 2 AB4 2 ASP B 347 ILE B 350 1 O ARG B 349 N PHE B 225 SHEET 1 AB5 3 PRO B 241 GLY B 245 0 SHEET 2 AB5 3 GLY B 267 PRO B 273 -1 O LEU B 270 N ALA B 242 SHEET 3 AB5 3 ALA B 257 ARG B 258 -1 N ARG B 258 O TYR B 269 SHEET 1 AB6 2 ARG B 278 THR B 283 0 SHEET 2 AB6 2 MET B 287 PHE B 292 -1 O GLN B 289 N SER B 281 SHEET 1 AB7 2 VAL B 308 ARG B 309 0 SHEET 2 AB7 2 ALA B 315 TYR B 317 -1 O VAL B 316 N VAL B 308 CISPEP 1 GLY A 82 PRO A 83 0 4.68 CISPEP 2 ASN A 162 PRO A 163 0 3.14 CISPEP 3 ARG A 454 PRO A 455 0 2.40 CISPEP 4 GLY B 82 PRO B 83 0 -5.85 CISPEP 5 ASN B 162 PRO B 163 0 3.70 CISPEP 6 ARG B 454 PRO B 455 0 -0.18 SITE 1 AC1 34 GLY A 20 SER A 21 ILE A 22 ASP A 45 SITE 2 AC1 34 PRO A 46 SER A 47 ALA A 65 VAL A 66 SITE 3 AC1 34 LEU A 91 SER A 92 VAL A 93 THR A 95 SITE 4 AC1 34 THR A 114 VAL A 115 GLY A 160 ALA A 161 SITE 5 AC1 34 ASN A 162 PRO A 163 TRP A 229 SER A 230 SITE 6 AC1 34 GLU A 237 ILE A 350 VAL A 400 AG2 A 502 SITE 7 AC1 34 PUT A 503 HOH A 757 HOH A 764 HOH A 793 SITE 8 AC1 34 HOH A 799 HOH A 848 HOH A1019 HOH A1069 SITE 9 AC1 34 HOH A1138 HOH A1162 SITE 1 AC2 11 ASN A 162 GLU A 210 TRP A 229 GLU A 237 SITE 2 AC2 11 VAL A 294 THR A 295 SER A 296 TYR A 323 SITE 3 AC2 11 NAD A 501 PUT A 503 HOH A1091 SITE 1 AC3 7 ASN A 162 GLU A 210 TYR A 323 LEU A 363 SITE 2 AC3 7 NAD A 501 AG2 A 502 HOH A1091 SITE 1 AC4 5 SER A 47 ASP A 48 GLU A 49 ASP A 347 SITE 2 AC4 5 TRP A 348 SITE 1 AC5 4 MET A 338 GLY A 342 LYS A 343 ARG A 344 SITE 1 AC6 35 PHE B 19 GLY B 20 SER B 21 ILE B 22 SITE 2 AC6 35 ASP B 45 PRO B 46 ALA B 65 VAL B 66 SITE 3 AC6 35 LEU B 91 SER B 92 VAL B 93 THR B 95 SITE 4 AC6 35 THR B 114 VAL B 115 GLY B 160 ALA B 161 SITE 5 AC6 35 ASN B 162 PRO B 163 TRP B 229 SER B 230 SITE 6 AC6 35 GLU B 237 ILE B 350 VAL B 400 AG2 B 502 SITE 7 AC6 35 PUT B 503 HOH B 676 HOH B 693 HOH B 711 SITE 8 AC6 35 HOH B 720 HOH B 768 HOH B 772 HOH B 784 SITE 9 AC6 35 HOH B1070 HOH B1097 HOH B1106 SITE 1 AC7 10 ASN B 162 GLU B 210 TRP B 229 GLU B 237 SITE 2 AC7 10 THR B 295 SER B 296 TYR B 323 NAD B 501 SITE 3 AC7 10 PUT B 503 HOH B 871 SITE 1 AC8 7 ASN B 162 GLU B 210 TRP B 229 TYR B 323 SITE 2 AC8 7 NAD B 501 AG2 B 502 HOH B 871 SITE 1 AC9 4 LYS B 171 TRP B 194 LEU B 425 PHE B 427 SITE 1 AD1 7 SER B 167 VAL B 170 LYS B 171 ILE B 302 SITE 2 AD1 7 PHE B 305 LEU B 306 ASP B 423 CRYST1 60.035 110.233 157.474 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006350 0.00000